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{{UBERON
{{UBERON
|id=UBERON:0002546
|alt_id=UBERON:MIAA_0000369-XAO_0000305
|name=cranial placode
|namespace=
|def="Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm]
|xref=AAO:0010466;;MAT:0000369;;MIAA:0000369;;XAO:0000305
|is_a=UBERON:0005085
|synonym="placode" BROAD [Wikipedia:Placode]
|comment=Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
|comment=Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
|alt_id=UBERON:MIAA_0000369-XAO_0000305
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002546
|is_a=UBERON:0005085
|is_obsolete=
|located_in=
|located_in=
|name=cranial placode
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033
|part_of=UBERON:0000033
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="placode" BROAD [Wikipedia:Placode]
|union_of=
|xref=AAO:0010466;;MAT:0000369;;MIAA:0000369;;XAO:0000305
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_e751c663870c04b3e9be3a6d17109921p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_e751c663870c04b3e9be3a6d17109921p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_e751c663870c04b3e9be3a6d17109921p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_e751c663870c04b3e9be3a6d17109921p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_e751c663870c04b3e9be3a6d17109921p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_e751c663870c04b3e9be3a6d17109921p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_e751c663870c04b3e9be3a6d17109921p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_e751c663870c04b3e9be3a6d17109921p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_e751c663870c04b3e9be3a6d17109921p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_e751c663870c04b3e9be3a6d17109921p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_e751c663870c04b3e9be3a6d17109921p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_e751c663870c04b3e9be3a6d17109921p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_e751c663870c04b3e9be3a6d17109921p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_e751c663870c04b3e9be3a6d17109921p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_e751c663870c04b3e9be3a6d17109921p41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_e751c663870c04b3e9be3a6d17109921p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_e751c663870c04b3e9be3a6d17109921p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_e751c663870c04b3e9be3a6d17109921p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_e751c663870c04b3e9be3a6d17109921p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_e751c663870c04b3e9be3a6d17109921p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_e751c663870c04b3e9be3a6d17109921p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_e751c663870c04b3e9be3a6d17109921p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_e751c663870c04b3e9be3a6d17109921p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_e751c663870c04b3e9be3a6d17109921p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_e751c663870c04b3e9be3a6d17109921p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_e751c663870c04b3e9be3a6d17109921p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_e751c663870c04b3e9be3a6d17109921p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_e751c663870c04b3e9be3a6d17109921p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_e751c663870c04b3e9be3a6d17109921p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_e751c663870c04b3e9be3a6d17109921p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_e751c663870c04b3e9be3a6d17109921p3@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_e751c663870c04b3e9be3a6d17109921p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_e751c663870c04b3e9be3a6d17109921p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_e751c663870c04b3e9be3a6d17109921p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_e751c663870c04b3e9be3a6d17109921p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_e751c663870c04b3e9be3a6d17109921p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_e751c663870c04b3e9be3a6d17109921p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_e751c663870c04b3e9be3a6d17109921p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_e751c663870c04b3e9be3a6d17109921p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_e751c663870c04b3e9be3a6d17109921p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_e751c663870c04b3e9be3a6d17109921p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_e751c663870c04b3e9be3a6d17109921p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_e751c663870c04b3e9be3a6d17109921p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_e751c663870c04b3e9be3a6d17109921p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921p3@Fanca
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_e751c663870c04b3e9be3a6d17109921p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_e751c663870c04b3e9be3a6d17109921p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_e751c663870c04b3e9be3a6d17109921p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_e751c663870c04b3e9be3a6d17109921p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_e751c663870c04b3e9be3a6d17109921p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_e751c663870c04b3e9be3a6d17109921p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_e751c663870c04b3e9be3a6d17109921p@chr2:75320183..75320189, +

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