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{{UBERON
{{UBERON
|id=UBERON:0007690
|alt_id=
|name=early pharyngeal endoderm
|namespace=
|def="." [http://dev.biologists.org/content/128/22/4573.full]
|xref=EFO:0003626;;EHDAA:962;;EHDAA2:0001457;;ZFA:0001104
|is_a=UBERON:0000925;;UBERON:0004119
|synonym="early pharyngeal arch endoderm" EXACT [EHDAA2:0001457];;"pharyngeal arch endoderm" RELATED [];;"pharyngeal endoderm" RELATED [ZFA:0001104];;"pharyngeal region endoderm" RELATED [EHDAA2:0001456]
|comment=relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'
|comment=relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="." [http://dev.biologists.org/content/128/22/4573.full]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000925
|develops_from=UBERON:0000925
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007690
|is_a=UBERON:0003258 ;;UBERON:0004814 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=early pharyngeal endoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0008814;;UBERON:0009722
|part_of=UBERON:0008814;;UBERON:0009722
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="early pharyngeal arch endoderm" EXACT [EHDAA2:0001457];;"pharyngeal arch endoderm" RELATED [];;"pharyngeal endoderm" RELATED [ZFA:0001104];;"pharyngeal region endoderm" RELATED [EHDAA2:0001456]
|union_of=
|xref=EFO:0003626;;EHDAA2:0001457;;EHDAA:962;;TAO:0001104;;ZFA:0001104
}}
}}

Latest revision as of 18:02, 12 September 2014

Name:early pharyngeal endoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EFO:0003626
EHDAA2:0001457
EHDAA:962
TAO:0001104

ZFA:0001104
Synonyms: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457]
"pharyngeal arch endoderm" RELATED []
"pharyngeal endoderm" RELATED [ZFA:0001104]
"pharyngeal region endoderm" RELATED [EHDAA2:0001456]
Comments:relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003258(endoderm of foregut),UBERON:0004814(upper respiratory tract epithelium),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0000925(endoderm)
part_of:UBERON:0008814(pharyngeal arch system),UBERON:0009722(entire pharyngeal arch endoderm)



Children

develops from:UBERON:0003351 (pharyngeal epithelium),UBERON:0004117 (pharyngeal pouch),UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007690 (early pharyngeal endoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.76e-68FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_28afe21f1226cb216e14232c453bf846p4@uc009bpa.1
1.76e-68FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_28afe21f1226cb216e14232c453bf846p4@uc009bpa.1
2.4e-67FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_0e6bc5816219dd42cd5171b8894ed8b3p8@uc009bpa.1
2.4e-67FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_0e6bc5816219dd42cd5171b8894ed8b3p8@uc009bpa.1
1.12e-65FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_6c9f22eabb8f53699d9f7d56378ff157p1@ENSMUST00000103288, p1@uc009bpl.1
1.12e-65FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_6c9f22eabb8f53699d9f7d56378ff157p1@ENSMUST00000103288, p1@uc009bpl.1
2.12e-64FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_1c5287b22385082565c80194d75776acp@chr6:41491752..41491776, -
2.12e-64FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_1c5287b22385082565c80194d75776acp@chr12:108361918..108361930, -
2.12e-64FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_1c5287b22385082565c80194d75776acp@chr6:41491752..41491776, -
2.12e-64FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_1c5287b22385082565c80194d75776acp@chr12:108361918..108361930, -
3.88e-63FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_71850c4c118a63aa6a9e7c33ec8acfa2p2@ENSMUST00000103283
3.88e-63FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_71850c4c118a63aa6a9e7c33ec8acfa2p2@ENSMUST00000103283
4.88e-63FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_ad648a589a0b90a57c9e8521c6975d6cp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
4.88e-63FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_ad648a589a0b90a57c9e8521c6975d6cp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
7.68e-62FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_c02afa086c813293e04b3cc61ed3759cp@chr9:44807434..44807445, -
7.68e-62FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_c02afa086c813293e04b3cc61ed3759cp@chr9:44807434..44807445, -
1.0e-61FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_a2cfbcf0478b13963436f2891cf2cb5ep@chr6:41494001..41494028, +
1.0e-61FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_a2cfbcf0478b13963436f2891cf2cb5ep@chr6:41494001..41494028, +
2.4e-61FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_302486934dfba12730ca70a6f40e1766p@chr9:44809185..44809215, -
2.4e-61FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_302486934dfba12730ca70a6f40e1766p@chr9:44809185..44809215, -
2.59e-61FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_634db4777e5fdb340d4ebeb4d49f7e53p11@Prkcq
2.59e-61FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_634db4777e5fdb340d4ebeb4d49f7e53p11@Prkcq
8.25e-61FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_ed964fdedb8ea2730cc035d165c5aa66p@chr14:54791784..54791787, +
8.25e-61FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_ed964fdedb8ea2730cc035d165c5aa66p@chr14:54791784..54791787, +
1.47e-60FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_3b2843e677e153e277ab43a3605cafcdp1@ENSMUST00000103263
1.47e-60FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_3b2843e677e153e277ab43a3605cafcdp1@ENSMUST00000103263
2.74e-60FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_4b3b04d42fd60e37195194f6e882ec97p5@Themis
2.74e-60FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_4b3b04d42fd60e37195194f6e882ec97p5@Themis
3.21e-60FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_6b6439ef8b2d1843ffbe62f6437b387cp5@uc009bpa.1
3.21e-60FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_6b6439ef8b2d1843ffbe62f6437b387cp5@uc009bpa.1
3.77e-60FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_09edb14107227295c4714293df53ebe2p@chr9:44793518..44793537, +
3.77e-60FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_09edb14107227295c4714293df53ebe2p@chr9:44793518..44793537, +
4.87e-60FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_cd2225ff8f4b86beb98e802ea2280c68p@chr6:41071548..41071565, +
4.87e-60FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_cd2225ff8f4b86beb98e802ea2280c68p@chr6:41071548..41071565, +
9.63e-60FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_82ede143d7c4ef1eaff4031744a7abf9p2@uc009bnp.1, p2@uc012eki.1
9.63e-60FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_82ede143d7c4ef1eaff4031744a7abf9p2@uc009bnp.1, p2@uc012eki.1
5.49e-59FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_d57705088d3b3ce58036cccab489e689p5@Tcf7
5.49e-59FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_d57705088d3b3ce58036cccab489e689p5@Tcf7
2.14e-58FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_6048b45d81a89702f2f892cba95027eep@chr14:61328148..61328173, +
2.14e-58FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_6048b45d81a89702f2f892cba95027eep@chr14:61328148..61328173, +
3.25e-58FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_1daf6932736e86769a08f1a84b2333b9p2@uc009bpa.1
3.25e-58FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_1daf6932736e86769a08f1a84b2333b9p2@uc009bpa.1
3.74e-58FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_58a9156c9e13febdb4dbab6cf0175ef9p2@Sh2d1a
3.74e-58FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_58a9156c9e13febdb4dbab6cf0175ef9p2@Sh2d1a
7.15e-58FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_05b88455d351f24e46e51f5b223d2b07p1@uc012ekr.1
7.15e-58FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_05b88455d351f24e46e51f5b223d2b07p1@uc012ekr.1
9.05e-58FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_4ca5a66558141c869bb01d2ae72986cdp2@1810009J06Rik
9.05e-58FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_4ca5a66558141c869bb01d2ae72986cdp2@1810009J06Rik
1.34e-57FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_d3296e54e9cd8580f53624b94c98ce1bp1@uc012ekk.1
1.34e-57FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_d3296e54e9cd8580f53624b94c98ce1bp1@uc012ekk.1
1.56e-57FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_f1e25a05fa761ffb03ac90924f6db471p3@uc009bpo.1, p3@uc009bpp.1
1.56e-57FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_f1e25a05fa761ffb03ac90924f6db471p3@uc009bpo.1, p3@uc009bpp.1
1.56e-57FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_f1e25a05fa761ffb03ac90924f6db471p1@ENSMUST00000103265
1.56e-57FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_f1e25a05fa761ffb03ac90924f6db471p1@ENSMUST00000103265
3.61e-57FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_a192a04fae89bf0d59c7c780246e1445p@chr7:133512043..133512060, -
3.61e-57FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_a192a04fae89bf0d59c7c780246e1445p@chr7:133512043..133512060, -
4.31e-57FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_c4b20c91aab87704c11b43d3a89ab2b4p2@Gm5409
4.31e-57FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_c4b20c91aab87704c11b43d3a89ab2b4p2@Gm5409
6.91e-57FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_869dbaf3918f3745cce54753cd2a65c7p4@Trat1
6.91e-57FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_869dbaf3918f3745cce54753cd2a65c7p4@Trat1
6.93e-57FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_d4d3afb061e4cd3858d8e743898f7cb4p5@Trat1
6.93e-57FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_d4d3afb061e4cd3858d8e743898f7cb4p5@Trat1
7.43e-57FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_a78aa1cc69a7277a0fce544744cd4688p@chr6:41489240..41489252, +
7.43e-57FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_a78aa1cc69a7277a0fce544744cd4688p@chr6:41489240..41489252, +
1.27e-56FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_0cda2a5a17abf22b8b1b94059e6b8750p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.27e-56FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_0cda2a5a17abf22b8b1b94059e6b8750p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.56e-56FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_b8d52d2497f0ce1c9e2fb7254160103cp@chr6:41494376..41494389, -
1.56e-56FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_b8d52d2497f0ce1c9e2fb7254160103cp1@ENSMUST00000103282
1.56e-56FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_b8d52d2497f0ce1c9e2fb7254160103cp@chr6:41494376..41494389, -
1.56e-56FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_b8d52d2497f0ce1c9e2fb7254160103cp1@ENSMUST00000103282
1.67e-56FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_c31a059ba4220debd756dd822a8e33a2p1@ENSMUST00000103298, p1@uc009bpy.1
1.67e-56FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_c31a059ba4220debd756dd822a8e33a2p1@ENSMUST00000103298, p1@uc009bpy.1
1.92e-56FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_facf78968310886ecf01a851c8d15ea2p@chr6:41492643..41492662, +
1.92e-56FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_facf78968310886ecf01a851c8d15ea2p@chr6:41492643..41492662, +
2.05e-56FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_19bd1b1139d58bfe8bf1620059eb7ee3p@chr14:54794540..54794554, +
2.05e-56FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_19bd1b1139d58bfe8bf1620059eb7ee3p@chr14:54794540..54794554, +
2.23e-56FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_7f29bcecbd6662959ac195940d7a6976p@chr6:41491801..41491815, -
2.23e-56FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_7f29bcecbd6662959ac195940d7a6976p@chr6:41491801..41491815, -
2.23e-56FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_7f29bcecbd6662959ac195940d7a6976p@chr14:54496363..54496388, +
2.23e-56FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_7f29bcecbd6662959ac195940d7a6976p@chr14:54496363..54496388, +
2.36e-56FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_ba42994c7f962a410bc33809207b312dp@chr6:41492605..41492621, +
2.36e-56FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_ba42994c7f962a410bc33809207b312dp@chr6:41492605..41492621, +
2.54e-56FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_a8538213da0ea56c2bb7e97ebc8c106ep1@Il13
2.54e-56FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_a8538213da0ea56c2bb7e97ebc8c106ep1@Il13
2.88e-56FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_214a48fba15d1b292477dc831af2696fp7@Lat
2.88e-56FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_214a48fba15d1b292477dc831af2696fp7@Lat
3.14e-56FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_60dd54098b52d5d1f2ce985e33267a6ap@chr6:41138311..41138333, +
3.14e-56FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_60dd54098b52d5d1f2ce985e33267a6ap@chr6:41138311..41138333, +
4.06e-56FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_773a60c769ee81798dfb5242404cdda3p5@uc009bnp.1, p5@uc012eki.1
4.06e-56FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_773a60c769ee81798dfb5242404cdda3p5@uc009bnp.1, p5@uc012eki.1
4.76e-56FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0b3cccf45f399ccdf1c0ab87637c9d2fp6@uc009bpa.1
4.76e-56FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp8@Lat
4.76e-56FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp8@Lat
4.76e-56FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0b3cccf45f399ccdf1c0ab87637c9d2fp6@uc009bpa.1
4.76e-56FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp@chr4:125978325..125978339, -
4.76e-56FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp@chr4:125978325..125978339, -
3.9e-55FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_9efc2e8faf195de2be4e5b1ffd4f9bcap2@Cd6
3.9e-55FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_9efc2e8faf195de2be4e5b1ffd4f9bcap2@Cd6
4.2e-55FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_30712aeb888a399c934429e8850aaacdp@chr11:52075039..52075066, +
4.2e-55FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_30712aeb888a399c934429e8850aaacdp@chr11:52075039..52075066, +

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