Personal tools

UBERON:0008886: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0008886
|alt_id=
|name=pulmonary vascular system
|anatomical_img_id=FMA:45621
|namespace=
|def="Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation]
|xref=FMA:45621
|is_a=UBERON:0007798
|synonym="pulmonary circulatory system" EXACT [FMA:45621]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008886
|is_a=UBERON:0007798
|is_obsolete=
|located_in=
|located_in=
|name=pulmonary vascular system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004535
|part_of=UBERON:0004535
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="pulmonary circulatory system" EXACT [FMA:45621]
|union_of=
|xref=FMA:45621
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:pulmonary vascular system
Namespace:FANTOM
Definition:"Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation]
Xrefs:
links:
FMA:45621
Synonyms: "pulmonary circulatory system" EXACT [FMA:45621]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007798(vascular system)
part_of:UBERON:0004535(cardiovascular system)



Children

part of:UBERON:0002012 (pulmonary artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
  • 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
  • 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008886 (pulmonary vascular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_a6368f364361567376e972a7b077cb94p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_a6368f364361567376e972a7b077cb94p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_a6368f364361567376e972a7b077cb94p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_a6368f364361567376e972a7b077cb94p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_a6368f364361567376e972a7b077cb94p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_a6368f364361567376e972a7b077cb94p@chr8:90366581..90366594, -
2.74e-50FFCP PHASE2:Hg19::chr4:70707556..70707558,-#_e00918ba619b9ce9113ca536b6482e02p@chr4:70707556..70707558, -
2.74e-50FFCP PHASE1:Hg19::chr4:70707556..70707558,-#_e00918ba619b9ce9113ca536b6482e02p@chr4:70707556..70707558, -
4.52e-50FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_95bfdebc19d349e903a136a0f5f4c159p@chr8:120651826..120651840, -
4.52e-50FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_95bfdebc19d349e903a136a0f5f4c159p@chr3:158928407..158928414, +
4.52e-50FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_95bfdebc19d349e903a136a0f5f4c159p@chrX:23072856..23072859, -
4.52e-50FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_95bfdebc19d349e903a136a0f5f4c159p14@FAS
4.52e-50FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_95bfdebc19d349e903a136a0f5f4c159p14@FAS
4.52e-50FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_95bfdebc19d349e903a136a0f5f4c159p26@LINC00340
4.52e-50FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_95bfdebc19d349e903a136a0f5f4c159p@chr3:158928407..158928414, +
4.52e-50FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_95bfdebc19d349e903a136a0f5f4c159p@chrX:23072856..23072859, -
4.52e-50FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_95bfdebc19d349e903a136a0f5f4c159p@chr8:120651826..120651840, -
4.52e-50FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_95bfdebc19d349e903a136a0f5f4c159p26@LINC00340
3.61e-34FFCP PHASE2:Hg19::chr4:70707608..70707615,-#_36b4469975794eebe08367b206b1fde8p@chr4:70707608..70707615, -
3.61e-34FFCP PHASE1:Hg19::chr4:70707608..70707615,-#_36b4469975794eebe08367b206b1fde8p@chr4:70707608..70707615, -
5.04e-34FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_92357219b4fcaad12012bc1ee082deabp@chr17:76824975..76824978, -
5.04e-34FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_92357219b4fcaad12012bc1ee082deabp@chr11:131614903..131614910, -
5.04e-34FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_92357219b4fcaad12012bc1ee082deabp@chr17:76824975..76824978, -
5.04e-34FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_92357219b4fcaad12012bc1ee082deabp@chr3:156258392..156258395, -
5.04e-34FFCP PHASE1:Hg19::chr4:70690584..70690589,+#_92357219b4fcaad12012bc1ee082deabp@chr4:70690584..70690589, +
5.04e-34FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_92357219b4fcaad12012bc1ee082deabp@chr3:156258392..156258395, -
5.04e-34FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_92357219b4fcaad12012bc1ee082deabp@chr11:131614903..131614910, -
5.04e-34FFCP PHASE2:Hg19::chr4:70690584..70690589,+#_92357219b4fcaad12012bc1ee082deabp@chr4:70690584..70690589, +
7.05e-34FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_9e4ff9df2df5538047c2f7d32ed62c65p@chr7:18834859..18834879, -
7.05e-34FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_9e4ff9df2df5538047c2f7d32ed62c65p@chr4:38147484..38147500, -
7.05e-34FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chrX:140904171..140904173, +
7.05e-34FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr8:134047162..134047169, +
7.05e-34FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_9e4ff9df2df5538047c2f7d32ed62c65p13@PTGIS
7.05e-34FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_9e4ff9df2df5538047c2f7d32ed62c65p1@ENST00000406333
7.05e-34FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr9:16059821..16059828, +
7.05e-34FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_9e4ff9df2df5538047c2f7d32ed62c65p13@PTGIS
7.05e-34FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr4:24645959..24645967, +
7.05e-34FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr7:22687639..22687644, +
7.05e-34FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_9e4ff9df2df5538047c2f7d32ed62c65p1@CACNG8
7.05e-34FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_9e4ff9df2df5538047c2f7d32ed62c65p1@CACNG8
7.05e-34FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr13:38136724..38136726, +
7.05e-34FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_9e4ff9df2df5538047c2f7d32ed62c65p19@AMOTL1
7.05e-34FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_9e4ff9df2df5538047c2f7d32ed62c65p@chr1:93043102..93043113, -
7.05e-34FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_9e4ff9df2df5538047c2f7d32ed62c65p@chr4:38147484..38147500, -
7.05e-34FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_9e4ff9df2df5538047c2f7d32ed62c65p@chr1:93043102..93043113, -
7.05e-34FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_9e4ff9df2df5538047c2f7d32ed62c65p19@AMOTL1
7.05e-34FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_9e4ff9df2df5538047c2f7d32ed62c65p1@ENST00000406333
7.05e-34FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_9e4ff9df2df5538047c2f7d32ed62c65p@chr7:18834859..18834879, -
7.05e-34FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr4:24645959..24645967, +
7.05e-34FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chrX:140904171..140904173, +
7.05e-34FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr8:134047162..134047169, +
7.05e-34FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr9:16059821..16059828, +
7.05e-34FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr13:38136724..38136726, +
7.05e-34FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr7:22687639..22687644, +
7.05e-34FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr1:176668544..176668553, +
7.05e-34FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_9e4ff9df2df5538047c2f7d32ed62c65p@chr1:176668544..176668553, +
5.56e-26FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_cde6d37c7af356158f2a62baf24670f6p@chr9:33797893..33797903, +
5.56e-26FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_cde6d37c7af356158f2a62baf24670f6p@chr9:33797893..33797903, +
7.14e-26FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_67d8b740ce8f73da5a679cc44a35ce38p16@HMGA1
7.14e-26FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_67d8b740ce8f73da5a679cc44a35ce38p13@RAB11FIP5
7.14e-26FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr8:123580995..123581003, -
7.14e-26FFCP PHASE2:Hg19::chr4:891819..891820,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr4:891819..891820, -
7.14e-26FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr17:61995172..61995199, -
7.14e-26FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_67d8b740ce8f73da5a679cc44a35ce38p@chr18:65175930..65175941, +
7.14e-26FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_67d8b740ce8f73da5a679cc44a35ce38p1@ENST00000492301
7.14e-26FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_67d8b740ce8f73da5a679cc44a35ce38p13@RAB11FIP5
7.14e-26FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr17:61995172..61995199, -
7.14e-26FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr19:15509437..15509442, -
7.14e-26FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_67d8b740ce8f73da5a679cc44a35ce38p@chr18:65175930..65175941, +
7.14e-26FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_67d8b740ce8f73da5a679cc44a35ce38p16@HMGA1
7.14e-26FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_67d8b740ce8f73da5a679cc44a35ce38p1@ENST00000492301
7.14e-26FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr19:15509437..15509442, -
7.14e-26FFCP PHASE1:Hg19::chr4:891819..891820,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr4:891819..891820, -
7.14e-26FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_67d8b740ce8f73da5a679cc44a35ce38p1@SNORD105
7.14e-26FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_67d8b740ce8f73da5a679cc44a35ce38p1@SNORD105
7.14e-26FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_67d8b740ce8f73da5a679cc44a35ce38p@chr8:123580995..123581003, -
9.18e-26FFCP PHASE2:Hg19::chr5:146890197..146890224,-#_1d75f971394463d489ae28554866355bp@chr5:146890197..146890224, -
9.18e-26FFCP PHASE2:Hg19::chr2:84316409..84316414,-#_1d75f971394463d489ae28554866355bp@chr2:84316409..84316414, -
9.18e-26FFCP PHASE1:Hg19::chr3:11675748..11675759,-#_1d75f971394463d489ae28554866355bp@chr3:11675748..11675759, -
9.18e-26FFCP PHASE2:Hg19::chr4:114257151..114257163,+#_1d75f971394463d489ae28554866355bp28@ANK2
9.18e-26FFCP PHASE2:Hg19::chr8:94712896..94712909,+#_1d75f971394463d489ae28554866355bp10@FAM92A1
9.18e-26FFCP PHASE2:Hg19::chr2:238116338..238116342,-#_1d75f971394463d489ae28554866355bp@chr2:238116338..238116342, -
9.18e-26FFCP PHASE1:Hg19::chr15:71371688..71371691,-#_1d75f971394463d489ae28554866355bp@chr15:71371688..71371691, -
9.18e-26FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_1d75f971394463d489ae28554866355bp@chr6:148593641..148593643, +
9.18e-26FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_1d75f971394463d489ae28554866355bp5@BC031228
9.18e-26FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_1d75f971394463d489ae28554866355bp@chr9:33797981..33798005, -
9.18e-26FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_1d75f971394463d489ae28554866355bp@chr3:11675748..11675759, -
9.18e-26FFCP PHASE1:Hg19::chr5:146890197..146890224,-#_1d75f971394463d489ae28554866355bp@chr5:146890197..146890224, -
9.18e-26FFCP PHASE1:Hg19::chr8:37374492..37374499,-#_1d75f971394463d489ae28554866355bp1@ENST00000521989
9.18e-26FFCP PHASE1:Hg19::chr4:114257151..114257163,+#_1d75f971394463d489ae28554866355bp28@ANK2
9.18e-26FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_1d75f971394463d489ae28554866355bp@chr15:71371688..71371691, -
9.18e-26FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_1d75f971394463d489ae28554866355bp5@BC031228
9.18e-26FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_1d75f971394463d489ae28554866355bp@chr4:74392579..74392583, +
9.18e-26FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_1d75f971394463d489ae28554866355bp10@FAM92A1
9.18e-26FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_1d75f971394463d489ae28554866355bp@chr2:84316409..84316414, -
9.18e-26FFCP PHASE2:Hg19::chr19:681941..681952,+#_1d75f971394463d489ae28554866355bp@chr19:681941..681952, +
9.18e-26FFCP PHASE1:Hg19::chr1:185703364..185703371,-#_1d75f971394463d489ae28554866355bp@chr1:185703364..185703371, -
9.18e-26FFCP PHASE1:Hg19::chr19:681941..681952,+#_1d75f971394463d489ae28554866355bp@chr19:681941..681952, +
9.18e-26FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_1d75f971394463d489ae28554866355bp@chr6:148593641..148593643, +
9.18e-26FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_1d75f971394463d489ae28554866355bp@chr2:238116338..238116342, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0008886&oldid=3277945"