UBERON:0000996: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128 | ||
|comment=Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688 | |comment=Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688 | ||
|created_by= | |created_by= | ||
| | |def="a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0000164 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000996 | |||
|is_a=UBERON:0013515 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=vagina | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0003975 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0000243;;EFO:0000976;;EMAPA:18986;;EV:0100117;;FMA:19949;;GAID:381;;galen:Vagina;;http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg;;MA:0000394;;MAT:0000128;;MESH:A.05.360.319.779;;MIAA:0000128;;ncithesaurus:Vagina;;OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA;;SCTID:181441005;;VHOG:0001138 | |||
}} | }} | ||
Latest revision as of 17:13, 12 September 2014
| Name: | vagina | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina] | ||
| Xrefs: |
| ||
| Comments: | Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688 | ||
| Alt_id: | UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0013515(subdivision of uterine tube) |
|---|---|
| develops_from: | UBERON:0000164(primitive urogenital sinus) |
| part_of: | UBERON:0003975(internal female genitalia) |
Children
| is a: | FF:0102936 (vaginal cell line) |
|---|---|
| derives from: | FF:0010204 (human vagina - adult sample),FF:0011438 (mouse vagina- adult sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10204-103F6 (vagina, adult)
- 10602-108E8
- 89-27D5 (vagina, adult)
Mouse (Mus musculus)
- 10204-103F6 (vagina, adult)
- 10602-108E8
- 89-27D5 (vagina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000996 (vagina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:75927025..75927030,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr7:75927025..75927030, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:75927025..75927030,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr7:75927025..75927030, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:131871258..131871269,-#_ad475468fc4395f13e60290ec96bc3f4 | p3@CRAT |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:131871258..131871269,-#_ad475468fc4395f13e60290ec96bc3f4 | p3@CRAT |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:1344323..1344328,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr16:1344323..1344328, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:1344323..1344328,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr16:1344323..1344328, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:116200801..116200808,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr12:116200801..116200808, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:75926905..75926913,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr7:75926905..75926913, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:75926905..75926913,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr7:75926905..75926913, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:116200801..116200808,-#_ad475468fc4395f13e60290ec96bc3f4 | p@chr12:116200801..116200808, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:138419516..138419520,-#_560b667da5c4aa093ce842065ef8e7f6 | p14@Pla2g5 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:89223836..89223840,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr12:89223836..89223840, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:100107526..100107540,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100107526..100107540, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:101506516..101506534,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101506516..101506534, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:95514619..95514622,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr3:95514619..95514622, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:95514619..95514622,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr3:95514619..95514622, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:100108943..100108977,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100108943..100108977, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:73894503..73894506,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr18:73894503..73894506, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:100065595..100065616,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100065595..100065616, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:101522998..101523006,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101522998..101523006, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:101522998..101523006,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101522998..101523006, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:73894503..73894506,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr18:73894503..73894506, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:86802562..86802592,-#_560b667da5c4aa093ce842065ef8e7f6 | p6@Tmprss11d |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:100108943..100108977,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100108943..100108977, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:101506516..101506534,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101506516..101506534, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:100065595..100065616,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100065595..100065616, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:24172292..24172300,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr17:24172292..24172300, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:64859665..64859669,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr18:64859665..64859669, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:138419516..138419520,-#_560b667da5c4aa093ce842065ef8e7f6 | p14@Pla2g5 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:27866019..27866031,-#_560b667da5c4aa093ce842065ef8e7f6 | p2@Spdef |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:86802562..86802592,-#_560b667da5c4aa093ce842065ef8e7f6 | p6@Tmprss11d |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:89223836..89223840,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr12:89223836..89223840, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:101506878..101506897,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101506878..101506897, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:101506878..101506897,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101506878..101506897, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:100107430..100107473,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100107430..100107473, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:123747566..123747567,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr7:123747566..123747567, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:100107430..100107473,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100107430..100107473, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:123747566..123747567,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr7:123747566..123747567, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:27866019..27866031,-#_560b667da5c4aa093ce842065ef8e7f6 | p2@Spdef |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:101506963..101506974,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101506963..101506974, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24172292..24172300,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr17:24172292..24172300, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:101506963..101506974,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr15:101506963..101506974, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:100107526..100107540,-#_560b667da5c4aa093ce842065ef8e7f6 | p@chr11:100107526..100107540, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:64859665..64859669,+#_560b667da5c4aa093ce842065ef8e7f6 | p@chr18:64859665..64859669, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr19:56746179..56746184,+#_f2adfd0f6afb98331d4d65baedb476f6 | p@chr19:56746179..56746184, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:18126511..18126516,+#_f2adfd0f6afb98331d4d65baedb476f6 | p31@HDAC9 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:18126511..18126516,+#_f2adfd0f6afb98331d4d65baedb476f6 | p31@HDAC9 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr19:56746179..56746184,+#_f2adfd0f6afb98331d4d65baedb476f6 | p@chr19:56746179..56746184, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:64761275..64761283,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06 | p14@ESR2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:64761275..64761283,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06 | p14@ESR2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:49061764..49061766,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06 | p@chr19:49061764..49061766, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:49061764..49061766,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06 | p@chr19:49061764..49061766, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr19:1021828..1021838,+#_5269c05eb55e78d824969217d9aae469 | p@chr19:1021828..1021838, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr19:1021828..1021838,+#_5269c05eb55e78d824969217d9aae469 | p@chr19:1021828..1021838, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:100884779..100884815,-#_5269c05eb55e78d824969217d9aae469 | p7@FIS1 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:100884779..100884815,-#_5269c05eb55e78d824969217d9aae469 | p7@FIS1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_9276f9be3a1713c6704a3abc8a478640 | p@chr10:91567053..91567066, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_9276f9be3a1713c6704a3abc8a478640 | p@chr10:91567075..91567084, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:42539377..42539381,+#_9276f9be3a1713c6704a3abc8a478640 | p2@MIR3197 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:55587266..55587275,+#_9276f9be3a1713c6704a3abc8a478640 | p8@EPS8L1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:42539377..42539381,+#_9276f9be3a1713c6704a3abc8a478640 | p2@MIR3197 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_9276f9be3a1713c6704a3abc8a478640 | p@chr10:91567053..91567066, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:55587266..55587275,+#_9276f9be3a1713c6704a3abc8a478640 | p8@EPS8L1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_9276f9be3a1713c6704a3abc8a478640 | p@chr10:91567075..91567084, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:72350972..72350982,+#_e42912922140d754abfd2c0a2f5333d5 | p@chr11:72350972..72350982, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:48147711..48147719,+#_e42912922140d754abfd2c0a2f5333d5 | p19@SLC48A1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:130440713..130440724,+#_e42912922140d754abfd2c0a2f5333d5 | p9@STXBP1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:130440713..130440724,+#_e42912922140d754abfd2c0a2f5333d5 | p9@STXBP1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:102027518..102027524,-#_e42912922140d754abfd2c0a2f5333d5 | p@chr14:102027518..102027524, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:102027518..102027524,-#_e42912922140d754abfd2c0a2f5333d5 | p@chr14:102027518..102027524, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:48147711..48147719,+#_e42912922140d754abfd2c0a2f5333d5 | p19@SLC48A1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:72350972..72350982,+#_e42912922140d754abfd2c0a2f5333d5 | p@chr11:72350972..72350982, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:205099700..205099708,-#_e42912922140d754abfd2c0a2f5333d5 | p2@ENST00000419860 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:139636583..139636593,+#_e42912922140d754abfd2c0a2f5333d5 | p@chr9:139636583..139636593, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:205099700..205099708,-#_e42912922140d754abfd2c0a2f5333d5 | p2@ENST00000419860 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:139636583..139636593,+#_e42912922140d754abfd2c0a2f5333d5 | p@chr9:139636583..139636593, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:139636619..139636627,+#_e42912922140d754abfd2c0a2f5333d5 | p@chr9:139636619..139636627, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:139636619..139636627,+#_e42912922140d754abfd2c0a2f5333d5 | p@chr9:139636619..139636627, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:116200864..116200875,-#_506bdc2a207a52af36b807b445a16d49 | p@chr12:116200864..116200875, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:116200864..116200875,-#_506bdc2a207a52af36b807b445a16d49 | p@chr12:116200864..116200875, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr18:35502686..35502690,-#_b487af833fb3944f88fc7040865f113c | p@chr18:35502686..35502690, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr15:101520939..101520945,-#_b487af833fb3944f88fc7040865f113c | p@chr15:101520939..101520945, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:101520939..101520945,-#_b487af833fb3944f88fc7040865f113c | p@chr15:101520939..101520945, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr3:122788591..122788596,+#_b487af833fb3944f88fc7040865f113c | p@chr3:122788591..122788596, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr19:29939712..29939747,-#_b487af833fb3944f88fc7040865f113c | p@chr19:29939712..29939747, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr17:14398060..14398061,+#_b487af833fb3944f88fc7040865f113c | p@chr17:14398060..14398061, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:86802426..86802432,-#_b487af833fb3944f88fc7040865f113c | p4@Tmprss11d |
| 2.74e-44 | FFCP PHASE1:Mm9::chr9:121960329..121960336,-#_b487af833fb3944f88fc7040865f113c | p@chr9:121960329..121960336, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:50927615..50927622,-#_b487af833fb3944f88fc7040865f113c | p@chr7:50927615..50927622, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr3:120909250..120909282,-#_b487af833fb3944f88fc7040865f113c | p@chr3:120909250..120909282, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr15:101520635..101520643,-#_b487af833fb3944f88fc7040865f113c | p@chr15:101520635..101520643, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:101520635..101520643,-#_b487af833fb3944f88fc7040865f113c | p@chr15:101520635..101520643, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr3:120909250..120909282,-#_b487af833fb3944f88fc7040865f113c | p@chr3:120909250..120909282, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:56445929..56445936,-#_b487af833fb3944f88fc7040865f113c | p@chr4:56445929..56445936, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr11:100066063..100066077,+#_b487af833fb3944f88fc7040865f113c | p@chr11:100066063..100066077, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr17:31827369..31827371,-#_b487af833fb3944f88fc7040865f113c | p@chr17:31827369..31827371, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr3:96422520..96422551,+#_b487af833fb3944f88fc7040865f113c | p@chr3:96422520..96422551, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:88697948..88697959,+#_b487af833fb3944f88fc7040865f113c | p1@Gm7714 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr15:101506711..101506719,-#_b487af833fb3944f88fc7040865f113c | p@chr15:101506711..101506719, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:101506711..101506719,-#_b487af833fb3944f88fc7040865f113c | p@chr15:101506711..101506719, - |
