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{{UBERON
{{UBERON
|id=UBERON:0004199
|alt_id=
|name=S-shaped body
|namespace=
|def="The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050]
|xref=EMAPA:27756;;EMAPA:27853;;ZFA:0005589
|is_a=UBERON:0010532
|synonym="stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html]
|comment=TODO
|comment=TODO
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004198
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004199
|is_a=UBERON:0010532
|is_obsolete=
|located_in=
|located_in=
|name=S-shaped body
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html]
|union_of=
|xref=EMAPA:27756;;EMAPA:27853;;ZFA:0005589
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:S-shaped body
Namespace:FANTOM
Definition:"The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050]
Xrefs:
links:

EMAPA:27756
EMAPA:27853

ZFA:0005589
Synonyms: "stage II nephron" EXACT [1]
Comments:TODO

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010532(primitive nephron)
develops_from:UBERON:0004198(comma-shaped body)



Children

develops from:UBERON:0001230 (glomerular capsule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004199 (S-shaped body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_954681b29b21f430b5af02527035120fp@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_954681b29b21f430b5af02527035120fp@chr2:120409486..120409492, +
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2c5a060b30139e4155d17ae5a0cbfaadp1@ENST00000413103
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2c5a060b30139e4155d17ae5a0cbfaadp1@ENST00000413103
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_518cf6ad8720dd678b9ec7219c624b4dp@chr17:79426453..79426462, +
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_518cf6ad8720dd678b9ec7219c624b4dp@chr17:79426453..79426462, +
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_0d71cf95872b2b66cba9fdacba45db97p@chr8:77557753..77557755, -
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_0d71cf95872b2b66cba9fdacba45db97p@chr8:77557753..77557755, -
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_816ae336356a371cad55a2f2e879f72fp6@TINAGL1
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_816ae336356a371cad55a2f2e879f72fp6@TINAGL1
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_594361ce5f5c0bfddaed199d684f01c9p9@FURIN
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_594361ce5f5c0bfddaed199d684f01c9p9@FURIN
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_5d6b6b69eeac552122d3e31c7fa68936p7@LRRN4
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_5d6b6b69eeac552122d3e31c7fa68936p7@LRRN4
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_2237ae462165bc78db48277cd7b2762fp@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_2237ae462165bc78db48277cd7b2762fp@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_2237ae462165bc78db48277cd7b2762fp7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_2237ae462165bc78db48277cd7b2762fp@chr6:18225523..18225534, -
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_2237ae462165bc78db48277cd7b2762fp@chr2:26700331..26700340, -
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_2237ae462165bc78db48277cd7b2762fp@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_2237ae462165bc78db48277cd7b2762fp@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_2237ae462165bc78db48277cd7b2762fp@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_2237ae462165bc78db48277cd7b2762fp7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_2237ae462165bc78db48277cd7b2762fp@chr6:18225523..18225534, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_a9863de7d6620ba981aadd308168dd01p@chr10:3477893..3477912, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_a9863de7d6620ba981aadd308168dd01p@chr10:3477893..3477912, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_d3dbc84f41c4ae282838a5feab64fee3p@chr1:172926077..172926120, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_d3dbc84f41c4ae282838a5feab64fee3p@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_551e00fa523b0eb8af695fd9162f72a7p5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_551e00fa523b0eb8af695fd9162f72a7p5@APLN
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_6871d8c60a94f95f6242032a77fb57eep@chr2:693380..693398, +
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_6871d8c60a94f95f6242032a77fb57eep@chr2:693380..693398, +
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_409e7e2398097c35ba5478e93bb1c478p@chr6:84849252..84849259, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_409e7e2398097c35ba5478e93bb1c478p@chr2:133426030..133426041, -
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_409e7e2398097c35ba5478e93bb1c478p@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_409e7e2398097c35ba5478e93bb1c478p@chr2:133426030..133426041, -
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_3d8ff26da12362511243a49fc639b9afp23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_3d8ff26da12362511243a49fc639b9afp10@TRIL
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_3d8ff26da12362511243a49fc639b9afp23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_3d8ff26da12362511243a49fc639b9afp10@TRIL
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_f303c295763ada83f73c06bc157f3481p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_f303c295763ada83f73c06bc157f3481p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f303c295763ada83f73c06bc157f3481p@chr15:85403302..85403304, +
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f303c295763ada83f73c06bc157f3481p@chr15:85403302..85403304, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_d2a6fe3689744b923652da0fbbb37f0fp@chr16:2141529..2141537, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_d2a6fe3689744b923652da0fbbb37f0fp@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_cfbe9a97a2df2ea0f8be7c6e2ad3011ap@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_cfbe9a97a2df2ea0f8be7c6e2ad3011ap@chr5:74244100..74244117, +
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_5b89e25addf22f06336c264bb58099f3p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_5b89e25addf22f06336c264bb58099f3p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_bfb7f1bc7ab83963987a326b33dc39fbp@chr16:86768403..86768437, +
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_bfb7f1bc7ab83963987a326b33dc39fbp@chr16:86768403..86768437, +
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_dee83978df4c69b3ce89782b8484dfc0p@chr17:2076002..2076026, -
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_dee83978df4c69b3ce89782b8484dfc0p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_a3565658de6c321f72ac7f430664da76p3@FAM167B
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_a3565658de6c321f72ac7f430664da76p3@FAM167B
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_f547dfde353c8fe20038a531562d53c9p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_f547dfde353c8fe20038a531562d53c9p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_22e00b66ae6bdc07672989f083a5912ap1@ENST00000487339
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_22e00b66ae6bdc07672989f083a5912ap1@ENST00000487339
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_8817adfc0a79d906e61fae1ced29b1cdp@chr19:47231340..47231383, -
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_8817adfc0a79d906e61fae1ced29b1cdp@chr19:47231340..47231383, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_391cc1db4009e9f2893bfc8ff66fdb21p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_391cc1db4009e9f2893bfc8ff66fdb21p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_7720a44b90387e6ebe441b12b4f238f2p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_7720a44b90387e6ebe441b12b4f238f2p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_72a0964b85f8864269f30b5c8eaf6b06p@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_72a0964b85f8864269f30b5c8eaf6b06p@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_836b9370460ff97592f330884a4e9518p@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_836b9370460ff97592f330884a4e9518p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_836b9370460ff97592f330884a4e9518p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_836b9370460ff97592f330884a4e9518p@chr9:35753821..35753835, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_7829e0b2821b95d61f0ddddb7152a449p@chr4:145568170..145568180, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_7829e0b2821b95d61f0ddddb7152a449p@chr4:145568170..145568180, -
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_0aa50e11e37be2296f44ba19a1f9c345p1@WDR87
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_0aa50e11e37be2296f44ba19a1f9c345p1@WDR87
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_fada0f033f737bfd70bb5489cd4149f8p@chr14:91270270..91270281, -
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_fada0f033f737bfd70bb5489cd4149f8p@chr14:91270270..91270281, -
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_c180df850dd9c773ccf90c6b30237656p6@ACVRL1
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_c180df850dd9c773ccf90c6b30237656p6@ACVRL1
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_20be9bd401a2a5ae239692a54a5c259cp@chr3:43538305..43538325, -
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_20be9bd401a2a5ae239692a54a5c259cp@chr3:43538305..43538325, -
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_ee5a21f308ea390f8bc8f9d19b30ca55p@chr17:171147..171161, +
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_ee5a21f308ea390f8bc8f9d19b30ca55p@chr17:171147..171161, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_53655d5bcf4a1e22047bb843acdcc6c0p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_53655d5bcf4a1e22047bb843acdcc6c0p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8a5f5391f5561cafb1a32664d1a9b75dp7@HOXA10
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8a5f5391f5561cafb1a32664d1a9b75dp7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_eb809657c7d627653dc3acef223e5647p3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_eb809657c7d627653dc3acef223e5647p3@TINAGL1
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_7acc40238fdfeb6425c9fdc34063f279p17@CTGF
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_7acc40238fdfeb6425c9fdc34063f279p17@CTGF
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_303cdaa4d9144fd157742735c6adffb8p5@AP2A2
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_303cdaa4d9144fd157742735c6adffb8p5@AP2A2
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_e16abda9856f5f49c22ab00cd767852ep@chr19:42007093..42007107, -
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_e16abda9856f5f49c22ab00cd767852ep@chr19:42007093..42007107, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_7e16c2de0893c20e38a9f37386f6e72ap@chrX:128781853..128781866, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_7e16c2de0893c20e38a9f37386f6e72ap@chrX:128781853..128781866, -
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_ac98d64597fee33d754a64eea9715ff4p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_ac98d64597fee33d754a64eea9715ff4p@chr16:86604624..86604648, +

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