Personal tools

CL:1000746: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000746
|alt_id=
|name=glomerular cell
|namespace=cell
|def=
|xref=KUPO:0001036
|is_a=CL:1000612
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000746
|is_a=CL:1000612
|is_obsolete=
|located_in=
|located_in=
|name=glomerular cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000074
|part_of=UBERON:0000074
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=KUPO:0001036
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:glomerular cell
Namespace:FANTOM
Xrefs:
links:
KUPO:0001036


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:1000612(kidney corpuscule cell)
part_of:UBERON:0000074(renal glomerulus)



Children


is a:CL:0002188 (glomerular endothelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000746 (glomerular cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a0f1c3c0050a399b47840b420e15688ap@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a0f1c3c0050a399b47840b420e15688ap@chr2:120409486..120409492, +
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_7082c37030bf900e0ea3d3bf5f41669bp1@ENST00000413103
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_7082c37030bf900e0ea3d3bf5f41669bp1@ENST00000413103
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_d79da224893df3329f2ba6405b2539b6p@chr17:79426453..79426462, +
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_d79da224893df3329f2ba6405b2539b6p@chr17:79426453..79426462, +
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_4c309a48d9b4a37123e9e51b496bb48ap@chr8:77557753..77557755, -
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_4c309a48d9b4a37123e9e51b496bb48ap@chr8:77557753..77557755, -
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_2d833767f8b648ebde733b8843c00f77p6@TINAGL1
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_2d833767f8b648ebde733b8843c00f77p6@TINAGL1
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_f38afd07329226b6ca4e96845705f0acp9@FURIN
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_f38afd07329226b6ca4e96845705f0acp9@FURIN
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_ea922a4a2f612ce9361d4284df936894p7@LRRN4
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_ea922a4a2f612ce9361d4284df936894p7@LRRN4
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_3651a7317d3817757f0a9a95e52cdd90p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_3651a7317d3817757f0a9a95e52cdd90p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_3651a7317d3817757f0a9a95e52cdd90p7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_3651a7317d3817757f0a9a95e52cdd90p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_3651a7317d3817757f0a9a95e52cdd90p@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_3651a7317d3817757f0a9a95e52cdd90p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_3651a7317d3817757f0a9a95e52cdd90p7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_3651a7317d3817757f0a9a95e52cdd90p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_3651a7317d3817757f0a9a95e52cdd90p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_3651a7317d3817757f0a9a95e52cdd90p@chr2:26700331..26700340, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_0a16e0ba238ec1b85e0b2bfd06a02d73p@chr10:3477893..3477912, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_0a16e0ba238ec1b85e0b2bfd06a02d73p@chr10:3477893..3477912, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_64ecf4b7e1943a0c0d562282fee238bep@chr1:172926077..172926120, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_64ecf4b7e1943a0c0d562282fee238bep@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_4247d1e64091174458068ddea334c113p5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_4247d1e64091174458068ddea334c113p5@APLN
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_0b366ea11bd6eff483bf6a658ca44a8bp@chr2:693380..693398, +
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_0b366ea11bd6eff483bf6a658ca44a8bp@chr2:693380..693398, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_6cecc71b37e71b81241cc6933dd9b263p@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_6cecc71b37e71b81241cc6933dd9b263p@chr6:84849252..84849259, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_6cecc71b37e71b81241cc6933dd9b263p@chr2:133426030..133426041, -
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_6cecc71b37e71b81241cc6933dd9b263p@chr6:84849252..84849259, +
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_856138d8ab969d70845b54588730d48ap23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_856138d8ab969d70845b54588730d48ap10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_856138d8ab969d70845b54588730d48ap23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_856138d8ab969d70845b54588730d48ap10@TRIL
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_3850f244b0445e03571d1c9f86fae33cp@chr15:85403302..85403304, +
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_3850f244b0445e03571d1c9f86fae33cp@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_3850f244b0445e03571d1c9f86fae33cp@chr15:85403302..85403304, +
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_3850f244b0445e03571d1c9f86fae33cp@chr7:4051097..4051112, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_eac3122ba10f47bb7ed91504313ccab6p@chr16:2141529..2141537, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_eac3122ba10f47bb7ed91504313ccab6p@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_4b978582ec206b6265acc7636311ec7cp@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_4b978582ec206b6265acc7636311ec7cp@chr5:74244100..74244117, +
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_9893e2356825fbd3876b3f1fdfa9ea11p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_9893e2356825fbd3876b3f1fdfa9ea11p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_3971252fb430df3a9fbd632319f9c490p@chr16:86768403..86768437, +
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_3971252fb430df3a9fbd632319f9c490p@chr16:86768403..86768437, +
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_e11cc4c57c7a97974c80b66508f53fa3p@chr17:2076002..2076026, -
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_e11cc4c57c7a97974c80b66508f53fa3p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_15967dedd489e02c2a2ec3725bc4df20p3@FAM167B
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_15967dedd489e02c2a2ec3725bc4df20p3@FAM167B
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_aae0b32fde2ab29e0ff094fc9837acfbp@chr11:124628392..124628427, -
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_aae0b32fde2ab29e0ff094fc9837acfbp@chr11:124628392..124628427, -
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_ea9a954c6ccaf946266d7f035fc35710p1@ENST00000487339
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_ea9a954c6ccaf946266d7f035fc35710p1@ENST00000487339
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_89f7399d67061d9aa51ae6eeb39c9604p@chr19:47231340..47231383, -
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_89f7399d67061d9aa51ae6eeb39c9604p@chr19:47231340..47231383, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_1e5cb3b3959ea82f2a75f65a83c50c33p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_1e5cb3b3959ea82f2a75f65a83c50c33p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_ecfd052af94e2db1137c139a84884c8bp@chr4:38057595..38057624, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_ecfd052af94e2db1137c139a84884c8bp@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_fe24c85be625382166302182226f522cp@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_fe24c85be625382166302182226f522cp@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_82a44803f4c1f270c4e580c5cfa12149p@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_82a44803f4c1f270c4e580c5cfa12149p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_82a44803f4c1f270c4e580c5cfa12149p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_82a44803f4c1f270c4e580c5cfa12149p@chr9:35753821..35753835, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_1b85033d7a29d2ef7491419dda77b73dp@chr4:145568170..145568180, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_1b85033d7a29d2ef7491419dda77b73dp@chr4:145568170..145568180, -
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_371bd663a2d1c9779c98a7247fa014cbp1@WDR87
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_371bd663a2d1c9779c98a7247fa014cbp1@WDR87
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_a082e2f332c4ec97cd4b52cc92ff04fbp@chr14:91270270..91270281, -
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_a082e2f332c4ec97cd4b52cc92ff04fbp@chr14:91270270..91270281, -
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_0b1c8b9a2ee48eb213836597cc53a0c6p6@ACVRL1
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_0b1c8b9a2ee48eb213836597cc53a0c6p6@ACVRL1
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_4479d85f3a2e2163abb432e36bbfb544p@chr3:43538305..43538325, -
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_4479d85f3a2e2163abb432e36bbfb544p@chr3:43538305..43538325, -
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_430976f7659f502a419bc8f44bd2a4ffp@chr17:171147..171161, +
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_430976f7659f502a419bc8f44bd2a4ffp@chr17:171147..171161, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_71f8d5e95481297992e311c255feea61p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_71f8d5e95481297992e311c255feea61p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_238ca5cfe328887833f2c64674260f52p7@HOXA10
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_238ca5cfe328887833f2c64674260f52p7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_84db9eabcdf245ed69461a8e4c9b2e23p3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_84db9eabcdf245ed69461a8e4c9b2e23p3@TINAGL1
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_04c3a7d0f67e06edab8a0563e4ecb1e0p17@CTGF
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_04c3a7d0f67e06edab8a0563e4ecb1e0p17@CTGF
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_473f1c655ce3c0ab7656c5882b1e08a1p5@AP2A2
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_473f1c655ce3c0ab7656c5882b1e08a1p5@AP2A2
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_0cc26961e65b2a388e30a31c34985d3bp@chr19:42007093..42007107, -
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_0cc26961e65b2a388e30a31c34985d3bp@chr19:42007093..42007107, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_a8d531878fea04ef9be9172af997f4dbp@chrX:128781853..128781866, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_a8d531878fea04ef9be9172af997f4dbp@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_f29e2fb0e1f0f2be0ce783318d576b2bp@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_f29e2fb0e1f0f2be0ce783318d576b2bp@chr16:86604624..86604648, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000746&oldid=3275590"