Personal tools

UBERON:0001046: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001046
|alt_id=UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
|name=hindgut
|namespace=
|def="Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
|xref=AAO:0011052;;BILA:0000087;;BTO:0000510;;EHDAA2:0000779;;EHDAA:975;;EMAPA:16715;;FBbt:00005384;;FMA:45618;;http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png;;MA:0001527;;ncithesaurus:Hindgut;;SCTID:362856002;;TGMA:0001020;;VHOG:0000459;;XAO:0000104
|is_a=UBERON:0004921
|synonym="metenteron" RELATED LATIN [Wikipedia:Hindgut]
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
|alt_id=UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
|subset=developmental_classification;;uberon_slim
|derives_from=
|derives_from=
|develops_from=UBERON:0003104
|develops_from=UBERON:0003104
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001046
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=hindgut
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=developmental_classification;;uberon_slim
|preceded_by=
|synonym="metenteron" RELATED LATIN [Wikipedia:Hindgut]
|union_of=
|xref=AAO:0011052;;BILA:0000087;;BTO:0000510;;EHDAA2:0000779;;EHDAA:975;;EMAPA:16715;;FBbt:00005384;;FMA:45618;;http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png;;MA:0001527;;ncithesaurus:Hindgut;;SCTID:362856002;;TGMA:0001020;;VHOG:0000459;;XAO:0000104
}}
}}

Latest revision as of 17:15, 12 September 2014

Name:hindgut
Namespace:FANTOM
Definition:"Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
Xrefs:
links:

AAO:0011052
BILA:0000087
BTO:0000510
EHDAA2:0000779
EHDAA:975
EMAPA:16715
FBbt:00005384
FMA:45618
[ Gray472.png Gray472.png]
[ 200px-Gray472.png 200px-Gray472.png]
MA:0001527
ncithesaurus:Hindgut
SCTID:362856002
TGMA:0001020
VHOG:0000459

XAO:0000104
Synonyms: "metenteron" RELATED LATIN [Wikipedia:Hindgut]
Comments:Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
Alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
Subset: developmental_classification
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
develops_from:UBERON:0003104(mesenchyme)



Children

develops from:UBERON:0001052 (rectum),UBERON:0004907 (lower digestive tract),UBERON:0006866 (terminal part of digestive tract)
part of:UBERON:0003353 (epithelium of hindgut),UBERON:0006866 (terminal part of digestive tract)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001046 (hindgut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.58e-44FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_9c4e0e772cc0371e18c86901861b1d74p@chr1:132699659..132699668, +
4.58e-44FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_9c4e0e772cc0371e18c86901861b1d74p@chr1:132699659..132699668, +
1.7e-39FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_020cb56649af947643fccde315caf6f0p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_020cb56649af947643fccde315caf6f0p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_020cb56649af947643fccde315caf6f0p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_020cb56649af947643fccde315caf6f0p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_020cb56649af947643fccde315caf6f0p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_020cb56649af947643fccde315caf6f0p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_020cb56649af947643fccde315caf6f0p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_020cb56649af947643fccde315caf6f0p@chr9:96425983..96425992, +
2.66e-39FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_08b4a53d9543a9add9ab42c0a6a88dbfp4@C1rb
2.66e-39FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_08b4a53d9543a9add9ab42c0a6a88dbfp2@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr5:120136866..120136874, +
2.66e-39FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:28922549..28922561, +
2.66e-39FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_08b4a53d9543a9add9ab42c0a6a88dbfp2@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_08b4a53d9543a9add9ab42c0a6a88dbfp3@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr9:120464717..120464741, +
2.66e-39FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:28924794..28924814, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_08b4a53d9543a9add9ab42c0a6a88dbfp4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_08b4a53d9543a9add9ab42c0a6a88dbfp4@Fam115e
2.66e-39FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:28924794..28924814, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_08b4a53d9543a9add9ab42c0a6a88dbfp3@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr19:11353922..11353934, -
2.66e-39FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr9:120464756..120464765, +
2.66e-39FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr19:11353922..11353934, -
2.66e-39FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr9:36337031..36337049, -
2.66e-39FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_08b4a53d9543a9add9ab42c0a6a88dbfp3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_08b4a53d9543a9add9ab42c0a6a88dbfp3@C1rb
2.66e-39FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_08b4a53d9543a9add9ab42c0a6a88dbfp4@Fam115e
2.66e-39FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_08b4a53d9543a9add9ab42c0a6a88dbfp@chr9:36337031..36337049, -
4.03e-30FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_9cf933536cfc4e16040cfbfa4ee5c49dp@chr7:114836670..114836681, +
4.03e-30FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_9cf933536cfc4e16040cfbfa4ee5c49dp@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_9cf933536cfc4e16040cfbfa4ee5c49dp1@Msmb
4.03e-30FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_9cf933536cfc4e16040cfbfa4ee5c49dp1@Msmb
4.03e-30FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_9cf933536cfc4e16040cfbfa4ee5c49dp3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_9cf933536cfc4e16040cfbfa4ee5c49dp3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_9cf933536cfc4e16040cfbfa4ee5c49dp@chr3:92288406..92288413, -
4.03e-30FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_9cf933536cfc4e16040cfbfa4ee5c49dp@chr3:92288406..92288413, -
5.61e-30FFCP PHASE2:Mm9::chr6:42539866..42539870,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42539866..42539870, -
5.61e-30FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_5a72004a66119456265cb16f8f5c6683p@chr9:74005044..74005065, +
5.61e-30FFCP PHASE1:Mm9::chr6:42537176..42537182,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42537176..42537182, -
5.61e-30FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_5a72004a66119456265cb16f8f5c6683p3@Upk3a
5.61e-30FFCP PHASE1:Mm9::chr11:100108943..100108977,-#_5a72004a66119456265cb16f8f5c6683p@chr11:100108943..100108977, -
5.61e-30FFCP PHASE2:Mm9::chr16:20188864..20188875,+#_5a72004a66119456265cb16f8f5c6683p@chr16:20188864..20188875, +
5.61e-30FFCP PHASE1:Mm9::chr1:37769602..37769611,-#_5a72004a66119456265cb16f8f5c6683p@chr1:37769602..37769611, -
5.61e-30FFCP PHASE1:Mm9::chr12:93026806..93026816,-#_5a72004a66119456265cb16f8f5c6683p12@Ston2
5.61e-30FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_5a72004a66119456265cb16f8f5c6683p@chr19:34791339..34791346, -
5.61e-30FFCP PHASE1:Mm9::chr6:42547830..42547837,-#_5a72004a66119456265cb16f8f5c6683p8@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr8:126864466..126864469,+#_5a72004a66119456265cb16f8f5c6683p@chr8:126864466..126864469, +
5.61e-30FFCP PHASE2:Mm9::chr10:75355747..75355754,-#_5a72004a66119456265cb16f8f5c6683p@chr10:75355747..75355754, -
5.61e-30FFCP PHASE1:Mm9::chr7:55008002..55008008,-#_5a72004a66119456265cb16f8f5c6683p@chr7:55008002..55008008, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535901..42535907,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42535901..42535907, -
5.61e-30FFCP PHASE2:Mm9::chr6:42547389..42547396,-#_5a72004a66119456265cb16f8f5c6683p14@Fam115e
5.61e-30FFCP PHASE1:Mm9::chrX:137642090..137642093,-#_5a72004a66119456265cb16f8f5c6683p8@Col4a6
5.61e-30FFCP PHASE1:Mm9::chr6:42547375..42547383,-#_5a72004a66119456265cb16f8f5c6683p10@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_5a72004a66119456265cb16f8f5c6683p@chr14:68331267..68331286, -
5.61e-30FFCP PHASE2:Mm9::chr9:7699504..7699515,+#_5a72004a66119456265cb16f8f5c6683p@chr9:7699504..7699515, +
5.61e-30FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_5a72004a66119456265cb16f8f5c6683p3@Npy6r
5.61e-30FFCP PHASE2:Mm9::chr4:152405146..152405150,+#_5a72004a66119456265cb16f8f5c6683p@chr4:152405146..152405150, +
5.61e-30FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_5a72004a66119456265cb16f8f5c6683p@chr14:29722238..29722242, -
5.61e-30FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_5a72004a66119456265cb16f8f5c6683p@chr15:36485068..36485103, -
5.61e-30FFCP PHASE1:Mm9::chr7:123747566..123747567,+#_5a72004a66119456265cb16f8f5c6683p@chr7:123747566..123747567, +
5.61e-30FFCP PHASE2:Mm9::chr11:100107430..100107473,-#_5a72004a66119456265cb16f8f5c6683p@chr11:100107430..100107473, -
5.61e-30FFCP PHASE1:Mm9::chr5:86802562..86802592,-#_5a72004a66119456265cb16f8f5c6683p6@Tmprss11d
5.61e-30FFCP PHASE2:Mm9::chr6:42551615..42551622,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42551615..42551622, -
5.61e-30FFCP PHASE2:Mm9::chr15:101506878..101506897,-#_5a72004a66119456265cb16f8f5c6683p@chr15:101506878..101506897, -
5.61e-30FFCP PHASE1:Mm9::chr15:101506878..101506897,-#_5a72004a66119456265cb16f8f5c6683p@chr15:101506878..101506897, -
5.61e-30FFCP PHASE2:Mm9::chr12:114453231..114453265,-#_5a72004a66119456265cb16f8f5c6683p@chr12:114453231..114453265, -
5.61e-30FFCP PHASE2:Mm9::chr9:36341608..36341609,-#_5a72004a66119456265cb16f8f5c6683p@chr9:36341608..36341609, -
5.61e-30FFCP PHASE1:Mm9::chr6:42536009..42536044,+#_5a72004a66119456265cb16f8f5c6683p@chr6:42536009..42536044, +
5.61e-30FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_5a72004a66119456265cb16f8f5c6683p@chr12:80992302..80992309, +
5.61e-30FFCP PHASE1:Mm9::chr5:33251992..33251995,+#_5a72004a66119456265cb16f8f5c6683p@chr5:33251992..33251995, +
5.61e-30FFCP PHASE1:Mm9::chr18:64859665..64859669,+#_5a72004a66119456265cb16f8f5c6683p@chr18:64859665..64859669, +
5.61e-30FFCP PHASE1:Mm9::chr16:20186645..20186650,+#_5a72004a66119456265cb16f8f5c6683p@chr16:20186645..20186650, +
5.61e-30FFCP PHASE1:Mm9::chr9:122970904..122970907,-#_5a72004a66119456265cb16f8f5c6683p@chr9:122970904..122970907, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535739..42535752,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42535739..42535752, -
5.61e-30FFCP PHASE2:Mm9::chr6:122422716..122422728,-#_5a72004a66119456265cb16f8f5c6683p15@Rimklb
5.61e-30FFCP PHASE2:Mm9::chr6:42543996..42544003,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42543996..42544003, -
5.61e-30FFCP PHASE1:Mm9::chr6:42539787..42539797,-#_5a72004a66119456265cb16f8f5c6683p@chr6:42539787..42539797, -
5.61e-30FFCP PHASE1:Mm9::chr6:54242736..54242738,-#_5a72004a66119456265cb16f8f5c6683p@chr6:54242736..54242738, -
5.61e-30FFCP PHASE1:Mm9::chr6:134172953..134172958,+#_5a72004a66119456265cb16f8f5c6683p@chr6:134172953..134172958, +
5.61e-30FFCP PHASE2:Mm9::chr16:20188882..20188884,+#_5a72004a66119456265cb16f8f5c6683p@chr16:20188882..20188884, +
5.61e-30FFCP PHASE1:Mm9::chr17:27866019..27866031,-#_5a72004a66119456265cb16f8f5c6683p2@Spdef
5.61e-30FFCP PHASE1:Mm9::chr19:11353179..11353189,-#_5a72004a66119456265cb16f8f5c6683p@chr19:11353179..11353189, -
5.61e-30FFCP PHASE2:Mm9::chr5:86802562..86802592,-#_5a72004a66119456265cb16f8f5c6683p6@Tmprss11d
5.61e-30FFCP PHASE1:Mm9::chrX:75093379..75093383,+#_5a72004a66119456265cb16f8f5c6683p@chrX:75093379..75093383, +
5.61e-30FFCP PHASE1:Mm9::chr6:42548119..42548136,-#_5a72004a66119456265cb16f8f5c6683p12@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr12:93026806..93026816,-#_5a72004a66119456265cb16f8f5c6683p12@Ston2
5.61e-30FFCP PHASE2:Mm9::chr7:123747566..123747567,+#_5a72004a66119456265cb16f8f5c6683p@chr7:123747566..123747567, +
5.61e-30FFCP PHASE1:Mm9::chr9:36341608..36341609,-#_5a72004a66119456265cb16f8f5c6683p@chr9:36341608..36341609, -
5.61e-30FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_5a72004a66119456265cb16f8f5c6683p3@Npy6r
5.61e-30FFCP PHASE1:Mm9::chr6:42547389..42547396,-#_5a72004a66119456265cb16f8f5c6683p14@Fam115e

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001046&oldid=3277189"