Personal tools

UBERON:0001802: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001802
|alt_id=UBERON:FMA_58868-MA_0002485
|name=posterior segment of eyeball
|namespace=
|def="The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball]
|xref=FMA:58868;;http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png;;MA:0002485;;ncithesaurus:Posterior_Eye_Segment;;SCTID:280659009;;ZFA:0005567
|is_a=UBERON:0000063;;UBERON:0004121
|synonym="eye posterior segment" EXACT [];;"posterior segment of eye" EXACT [];;"posterior segment of the eye" EXACT [];;"segmentum posterius (bulbus oculi)" EXACT [];;"segmentum posterius bulbi oculi" RELATED LATIN [Wikipedia:Posterior_segment_of_eyeball]
|comment=
|comment=
|alt_id=UBERON:FMA_58868-MA_0002485
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001802
|is_a=UBERON:0000063 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=posterior segment of eyeball
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0010230
|part_of=UBERON:0010230
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="eye posterior segment" EXACT [];;"posterior segment of eye" EXACT [];;"posterior segment of the eye" EXACT [];;"segmentum posterius (bulbus oculi)" EXACT [];;"segmentum posterius bulbi oculi" RELATED LATIN [Wikipedia:Posterior_segment_of_eyeball]
|union_of=
|xref=FMA:58868;;http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png;;MA:0002485;;ncithesaurus:Posterior_Eye_Segment;;SCTID:280659009;;ZFA:0005567
}}
}}

Latest revision as of 17:20, 12 September 2014

Name:posterior segment of eyeball
Namespace:FANTOM
Definition:"The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball]
Xrefs:
links:

FMA:58868
[1]
[ 200px-Schematic_diagram_of_the_human_eye_en.svg.png 200px-Schematic_diagram_of_the_human_eye_en.svg.png]
MA:0002485
ncithesaurus:Posterior_Eye_Segment
SCTID:280659009

ZFA:0005567
Synonyms: "eye posterior segment" EXACT []
"posterior segment of eye" EXACT []
"posterior segment of the eye" EXACT []
"segmentum posterius (bulbus oculi)" EXACT []
"segmentum posterius bulbi oculi" RELATED LATIN [Wikipedia:Posterior_segment_of_eyeball]
Alt_id: UBERON:FMA_58868-MA_0002485
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000063(organ segment),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0010230(eyeball of camera-type eye)



Children

part of:UBERON:0000966 (retina),UBERON:0001799 (vitreous chamber of eyeball)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001802 (posterior segment of eyeball), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.07e-130FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_dae2cf7647372571ca6e3e0c25069966p@chr13:99135322..99135327, -
1.07e-130FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_dae2cf7647372571ca6e3e0c25069966p2@SERPINE3
1.07e-130FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_dae2cf7647372571ca6e3e0c25069966p@chr13:99135322..99135327, -
1.07e-130FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_dae2cf7647372571ca6e3e0c25069966p2@SERPINE3
5.17e-105FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_c8fab651bb826bc9b2070adfce26b021p@chr11:109990513..109990520, -
5.17e-105FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_c8fab651bb826bc9b2070adfce26b021p@chr11:109990513..109990520, -
1.51e-104FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_e1df75cd2feb74d331c69caf39f483e3p@chr5:70308745..70308754, -
1.51e-104FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_e1df75cd2feb74d331c69caf39f483e3p@chr5:70308745..70308754, -
4.11e-102FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_0c8f254ff6e6272c1ad02668a3e008d2p@chr3:69928404..69928418, +
4.11e-102FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_0c8f254ff6e6272c1ad02668a3e008d2p@chr3:69928404..69928418, +
1.83e-98FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_476b4a8ccb819b77a7233f39b7fedf9fp@chr1:147150847..147150854, -
1.83e-98FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_476b4a8ccb819b77a7233f39b7fedf9fp@chr1:147150847..147150854, -
1.83e-98FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_476b4a8ccb819b77a7233f39b7fedf9fp9@C11orf9
1.83e-98FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_476b4a8ccb819b77a7233f39b7fedf9fp9@C11orf9
1.83e-98FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_476b4a8ccb819b77a7233f39b7fedf9fp5@ENST00000437916
1.83e-98FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_476b4a8ccb819b77a7233f39b7fedf9fp5@ENST00000437916
7.0e-88FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_08b14c3ba76cd6f5e3530016e749eeedp2@C11orf9
7.0e-88FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_08b14c3ba76cd6f5e3530016e749eeedp2@C11orf9
1.37e-87FFCP PHASE2:Hg19::chr17:932340..932343,-#_8a00a6088b965f7ea52ecfc2fce3f86ep@chr17:932340..932343, -
1.37e-87FFCP PHASE1:Hg19::chr17:932340..932343,-#_8a00a6088b965f7ea52ecfc2fce3f86ep@chr17:932340..932343, -
1.22e-75FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_0036716d168656208bd0535b24c3fc10p1@SERPINE3
1.22e-75FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_0036716d168656208bd0535b24c3fc10p1@SERPINE3
2.63e-75FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_dff846678ea33347359f84254340f91ap17@TTLL4
2.63e-75FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_dff846678ea33347359f84254340f91ap17@TTLL4
2.83e-66FFCP PHASE1:Hg19::chr17:1420239..1420279,-#_e5e4ec6684402edca3888fe61ceb30bfp9@INPP5K
2.83e-66FFCP PHASE2:Hg19::chr13:99135420..99135443,-#_e5e4ec6684402edca3888fe61ceb30bfp@chr13:99135420..99135443, -
2.83e-66FFCP PHASE1:Hg19::chr11:639444..639447,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr11:639444..639447, +
2.83e-66FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_e5e4ec6684402edca3888fe61ceb30bfp@chr2:165170873..165170919, -
2.83e-66FFCP PHASE1:Hg19::chr12:208274..208283,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr12:208274..208283, +
2.83e-66FFCP PHASE1:Hg19::chr22:41734286..41734290,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr22:41734286..41734290, +
2.83e-66FFCP PHASE1:Hg19::chr1:153476496..153476503,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr1:153476496..153476503, +
2.83e-66FFCP PHASE2:Hg19::chr17:1420239..1420279,-#_e5e4ec6684402edca3888fe61ceb30bfp9@INPP5K
2.83e-66FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_e5e4ec6684402edca3888fe61ceb30bfp@chr2:165170873..165170919, -
2.83e-66FFCP PHASE2:Hg19::chr22:41734286..41734290,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr22:41734286..41734290, +
2.83e-66FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr13:51913893..51913901, +
2.83e-66FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_e5e4ec6684402edca3888fe61ceb30bfp3@ENST00000558781
2.83e-66FFCP PHASE2:Hg19::chr1:153476496..153476503,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr1:153476496..153476503, +
2.83e-66FFCP PHASE1:Hg19::chr12:208292..208304,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr12:208292..208304, +
2.83e-66FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr21:45724075..45724081, +
2.83e-66FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_e5e4ec6684402edca3888fe61ceb30bfp@chr5:149250331..149250335, -
2.83e-66FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_e5e4ec6684402edca3888fe61ceb30bfp@chr5:149250331..149250335, -
2.83e-66FFCP PHASE1:Hg19::chr13:99135420..99135443,-#_e5e4ec6684402edca3888fe61ceb30bfp@chr13:99135420..99135443, -
2.83e-66FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr21:45724075..45724081, +
2.83e-66FFCP PHASE2:Hg19::chr12:208274..208283,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr12:208274..208283, +
2.83e-66FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr18:39859562..39859566, +
2.83e-66FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr3:39827273..39827281, +
2.83e-66FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_e5e4ec6684402edca3888fe61ceb30bfp3@ENST00000558781
2.83e-66FFCP PHASE2:Hg19::chr12:208292..208304,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr12:208292..208304, +
2.83e-66FFCP PHASE2:Hg19::chr11:639444..639447,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr11:639444..639447, +
2.83e-66FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr13:51913893..51913901, +
2.83e-66FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr18:39859562..39859566, +
2.83e-66FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_e5e4ec6684402edca3888fe61ceb30bfp@chr3:39827273..39827281, +
4.34e-66FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_6f948b74f451a0d9fc05253df99a5ccap@chr3:69928426..69928436, +
4.34e-66FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_6f948b74f451a0d9fc05253df99a5ccap@chr3:69928426..69928436, +
5.13e-66FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_53ee08804c0fea404ff55d763064f44ap@chr1:43533230..43533270, +
5.13e-66FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_53ee08804c0fea404ff55d763064f44ap@chr1:43533230..43533270, +
1.01e-59FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_e059aa514a8e2ed5a1dfe38d5232fc89p@chr9:140088882..140088898, -
1.01e-59FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_e059aa514a8e2ed5a1dfe38d5232fc89p@chr9:140088882..140088898, -
1.82e-59FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_d084434131a0ebe215d2e2fb1c6ab826p5@MFRP, p6@C1QTNF5
1.82e-59FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_d084434131a0ebe215d2e2fb1c6ab826p@chr16:84228961..84228982, +
1.82e-59FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_d084434131a0ebe215d2e2fb1c6ab826p5@MFRP, p6@C1QTNF5
1.82e-59FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_d084434131a0ebe215d2e2fb1c6ab826p@chr16:84228961..84228982, +
6.44e-59FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_c61e59ced61219d34f6fa989e2accae9p5@CLIC6
6.44e-59FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_c61e59ced61219d34f6fa989e2accae9p5@CLIC6
1.58e-53FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_f35100619fd5ee93cb6ccfb0e5ad5cecp@chr13:99135278..99135298, -
1.58e-53FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_f35100619fd5ee93cb6ccfb0e5ad5cecp@chr13:99135278..99135298, -
9.03e-53FFCP PHASE2:Hg19::chr1:205226309..205226329,+#_c90b9fecd39bb645110b41b4b5932ab7p4@TMCC2
9.03e-53FFCP PHASE1:Hg19::chr1:205226309..205226329,+#_c90b9fecd39bb645110b41b4b5932ab7p4@TMCC2
3.84e-50FFCP PHASE1:Hg19::chr17:932596..932605,-#_e8943e838983e99c243aa5e983fb1e9cp@chr17:932596..932605, -
3.84e-50FFCP PHASE2:Hg19::chr17:932596..932605,-#_e8943e838983e99c243aa5e983fb1e9cp@chr17:932596..932605, -
5.37e-50FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_e0fb79b838ef05e0faff6aabfa1dfc4ap1@SLC16A8
5.37e-50FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_e0fb79b838ef05e0faff6aabfa1dfc4ap1@SLC16A8
8.88e-50FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_0cd43cf459b2575da876ba3fb349ff38p@chr2:235591306..235591328, +
8.88e-50FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_0cd43cf459b2575da876ba3fb349ff38p@chr2:235591306..235591328, +
1.05e-49FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_310bbe833dd50e17be7161154daa8855p@chr3:183733654..183733680, -
1.05e-49FFCP PHASE1:Hg19::chrX:96819517..96819540,-#_310bbe833dd50e17be7161154daa8855p1@DIAPH2-AS1
1.05e-49FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_310bbe833dd50e17be7161154daa8855p@chr3:183733654..183733680, -
1.05e-49FFCP PHASE2:Hg19::chrX:96819517..96819540,-#_310bbe833dd50e17be7161154daa8855p1@DIAPH2-AS1
1.24e-49FFCP PHASE1:Hg19::chr16:89441550..89441568,-#_042c2c89886350527b5a40fe46adf356p@chr16:89441550..89441568, -
1.24e-49FFCP PHASE2:Hg19::chr16:89441550..89441568,-#_042c2c89886350527b5a40fe46adf356p@chr16:89441550..89441568, -
1.73e-49FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_59fd954d77a2bab78931bbb8f5f06af3p@chr3:98672197..98672201, +
1.73e-49FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_59fd954d77a2bab78931bbb8f5f06af3p@chr3:98672197..98672201, +
5.28e-49FFCP PHASE2:Hg19::chr14:57277163..57277168,-#_d6ae7d775d68148837dd847177c81a3ap4@OTX2
5.28e-49FFCP PHASE1:Hg19::chr14:57277163..57277168,-#_d6ae7d775d68148837dd847177c81a3ap4@OTX2
9.58e-49FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_5af2dad88c3b7d73f5ae9459d54378c5p@chr14:87636652..87636657, -
9.58e-49FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_5af2dad88c3b7d73f5ae9459d54378c5p@chr14:87636652..87636657, -
1.38e-48FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_de0cd346005d334cfd3d85dad8c636e1p@chr3:69928371..69928385, +
1.38e-48FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_de0cd346005d334cfd3d85dad8c636e1p@chr3:69928371..69928385, +
2.88e-48FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_d344c63745c2c418d6352cbae7a63bf2p13@NAV3
2.88e-48FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_d344c63745c2c418d6352cbae7a63bf2p13@NAV3
3.25e-48FFCP PHASE1:Hg19::chr1:53608289..53608315,-#_9319ff0c6bc492bb8cc064ebe0198711p1@SLC1A7
3.25e-48FFCP PHASE2:Hg19::chr1:53608289..53608315,-#_9319ff0c6bc492bb8cc064ebe0198711p1@SLC1A7
6.65e-45FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_102876e6ff67aa9c5c9f55a2f172a66dp3@CLIC6
6.65e-45FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_102876e6ff67aa9c5c9f55a2f172a66dp3@CLIC6
9.76e-45FFCP PHASE1:Hg19::chr2:219610770..219610777,+#_a62b1f020e97496fa3e5bccef6ee783dp19@TTLL4
9.76e-45FFCP PHASE2:Hg19::chr2:219610770..219610777,+#_a62b1f020e97496fa3e5bccef6ee783dp19@TTLL4
9.76e-45FFCP PHASE1:Hg19::chr21:16031159..16031171,-#_a62b1f020e97496fa3e5bccef6ee783dp3@LOC388813
9.76e-45FFCP PHASE2:Hg19::chr21:16031159..16031171,-#_a62b1f020e97496fa3e5bccef6ee783dp3@LOC388813
9.76e-45FFCP PHASE1:Hg19::chr7:129028525..129028531,+#_a62b1f020e97496fa3e5bccef6ee783dp32@AHCYL2
9.76e-45FFCP PHASE2:Hg19::chr9:111764519..111764525,-#_a62b1f020e97496fa3e5bccef6ee783dp@chr9:111764519..111764525, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001802&oldid=3277291"