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{{UBERON
{{UBERON
|id=UBERON:0008987
|alt_id=
|name=renal parenchyma
|namespace=
|def="The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604]
|xref=BTO:0003604;;FMA:15574;;SCTID:29704000
|is_a=UBERON:0000353;;UBERON:0006554
|synonym="kidney parenchyma" RELATED [BTO:0003604]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008987
|is_a=UBERON:0000353 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|name=renal parenchyma
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002113
|part_of=UBERON:0002113
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="kidney parenchyma" RELATED [BTO:0003604]
|union_of=
|xref=BTO:0003604;;FMA:15574;;SCTID:29704000
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:renal parenchyma
Namespace:FANTOM
Definition:"The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604]
Xrefs:
links:

BTO:0003604
FMA:15574

SCTID:29704000
Synonyms: "kidney parenchyma" RELATED [BTO:0003604]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000353(parenchyma),UBERON:0006554(urinary system structure)
part_of:UBERON:0002113(kidney)



Children

part of:UBERON:0001225 (cortex of kidney)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008987 (renal parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.8e-58FFCP PHASE1:Hg19::chr2:693380..693398,+#_974b5cc73974b3b86f4f122e77cb416fp@chr2:693380..693398, +
4.8e-58FFCP PHASE2:Hg19::chr2:693380..693398,+#_974b5cc73974b3b86f4f122e77cb416fp@chr2:693380..693398, +
4.05e-52FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_09dd5b476064868a2a5902cac8597572p7@HOXA10
4.05e-52FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_09dd5b476064868a2a5902cac8597572p7@HOXA10
1.06e-50FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_aca4cfdafca4e042a6059933203d19c8p@chr5:74244100..74244117, +
1.06e-50FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_aca4cfdafca4e042a6059933203d19c8p@chr5:74244100..74244117, +
5.59e-50FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_6b0331ee2d3bbb094079ac2b1905a8d6p2@PLA2G2F
5.59e-50FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_6b0331ee2d3bbb094079ac2b1905a8d6p2@PLA2G2F
6.11e-42FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_d2d322dc9077cd034b865f5444d297f8p@chr16:86768403..86768437, +
6.11e-42FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_d2d322dc9077cd034b865f5444d297f8p@chr16:86768403..86768437, +
3.58e-41FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_03f079e8968d3fec3501af383cb65a0ep4@MEGF11
3.58e-41FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_03f079e8968d3fec3501af383cb65a0ep4@MEGF11
1.0e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_979db6e15be2c4ca48dbab65215b57ebp1@ENST00000413103
1.0e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_979db6e15be2c4ca48dbab65215b57ebp1@ENST00000413103
6.83e-40FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_3954620d7be11f79e42c2bf1aff09684p@chr7:140227303..140227330, -
6.83e-40FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_3954620d7be11f79e42c2bf1aff09684p@chr7:140227303..140227330, -
9.22e-40FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d374e94412450ef751fcca02d6d08a93p3@PAX2
9.22e-40FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d374e94412450ef751fcca02d6d08a93p3@PAX2
1.79e-39FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_0172dbdfcd0b0e6e5274fd791d798070p@chr18:3456189..3456200, +
1.79e-39FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_0172dbdfcd0b0e6e5274fd791d798070p@chr18:3456189..3456200, +
4.5e-38FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_f55a4cbc1ede6337e37fd968f3b95d3ep11@VARS2
4.5e-38FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_f55a4cbc1ede6337e37fd968f3b95d3ep11@VARS2
8.61e-38FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_11e731d33d03d74bc5f296d0e6f54531p@chr2:120409486..120409492, +
8.61e-38FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_11e731d33d03d74bc5f296d0e6f54531p@chr2:120409486..120409492, +
5.07e-37FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_c17907f228b24b02be4de33202edc36bp2@AB527789
5.07e-37FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_c17907f228b24b02be4de33202edc36bp2@AB527789
6.37e-37FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_eb41e4a05e94955ce310c82b0109dfa9p@chr1:1100457..1100470, +
6.37e-37FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_eb41e4a05e94955ce310c82b0109dfa9p@chr1:1100457..1100470, +
1.63e-36FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_2ce1052f3a62f68f172e0bbaf87b7d5fp6@LRRN4
1.63e-36FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_2ce1052f3a62f68f172e0bbaf87b7d5fp6@LRRN4
2.81e-35FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_ce36c74265ad089d8ac87255b41bdc98p3@HNF1B
2.81e-35FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_ce36c74265ad089d8ac87255b41bdc98p3@HNF1B
4.37e-35FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d431d30bad4891ff92c63ebdde17a79ep4@AIF1L
4.37e-35FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d431d30bad4891ff92c63ebdde17a79ep4@AIF1L
1.19e-34FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_8928d49e7afc4f115f95af2ebfedc99ep4@PAX2
1.19e-34FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_8928d49e7afc4f115f95af2ebfedc99ep4@PAX2
5.98e-34FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_51e069ad5053af4dc42ad91a7165f89cp10@WWC1
5.98e-34FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_51e069ad5053af4dc42ad91a7165f89cp10@WWC1
2.93e-33FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_0178f2477fae4acbabd63fe7ccdfee20p2@LRRN4
2.93e-33FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_0178f2477fae4acbabd63fe7ccdfee20p2@LRRN4
1.44e-32FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_a4316056f476343250b7d18143e9ec49p2@CLDN6
1.44e-32FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_a4316056f476343250b7d18143e9ec49p2@CLDN6
1.85e-32FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_e3b12e68e730ca99dd64dd56d94c8a6ep5@LRRN4
1.85e-32FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_e3b12e68e730ca99dd64dd56d94c8a6ep5@LRRN4
4.69e-32FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_b155a367260af650ecff5132c31e61edp@chr7:140227349..140227360, -
4.69e-32FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_b155a367260af650ecff5132c31e61edp@chr7:140227349..140227360, -
1.23e-31FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_0ea3ee033d5ebfe9181e0494e75e5c58p@chr17:27970385..27970397, -
1.23e-31FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_0ea3ee033d5ebfe9181e0494e75e5c58p@chr17:27970385..27970397, -
2.99e-30FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f275d0989edb7657c79a950f15c0facep@chr15:85403302..85403304, +
2.99e-30FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f275d0989edb7657c79a950f15c0facep@chr15:85403302..85403304, +
3.02e-30FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_a5575d31a29c7f7ab539760ecb72e797p2@B3GALT5
3.02e-30FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_a5575d31a29c7f7ab539760ecb72e797p2@B3GALT5
1.06e-29FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_e23f4b0e6cc7372b7713a8f2fbdbd1c5p@chr19:50390837..50390847, +
1.06e-29FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_e23f4b0e6cc7372b7713a8f2fbdbd1c5p@chr19:50390837..50390847, +
1.26e-29FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_13c3e9a1ef8e15fe85b6779be6d18f69p3@LRRN4
1.26e-29FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_13c3e9a1ef8e15fe85b6779be6d18f69p3@LRRN4
1.54e-29FFCP PHASE1:Hg19::chr17:171147..171161,+#_f6dd9168a8557a902915baa5c8e95f50p@chr17:171147..171161, +
1.54e-29FFCP PHASE2:Hg19::chr17:171147..171161,+#_f6dd9168a8557a902915baa5c8e95f50p@chr17:171147..171161, +
3.11e-29FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_954222e7185fe9ce2a64527c287fbceap@chr21:46826248..46826282, -
3.11e-29FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_954222e7185fe9ce2a64527c287fbceap@chr21:46826248..46826282, -
4.34e-29FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_fa43a26a93d73bbd2f55bdf10e9f06dbp1@ENST00000418041, p1@ENST00000443104
4.34e-29FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_fa43a26a93d73bbd2f55bdf10e9f06dbp1@ENST00000418041, p1@ENST00000443104
1.58e-28FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_d9a4efc12a63997b9e23728511f1be17p3@AIF1L
1.58e-28FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_d9a4efc12a63997b9e23728511f1be17p3@AIF1L
2.94e-28FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_afde123f8a6d504f1c7c31539d323069p@chr7:7606139..7606151, -
2.94e-28FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_afde123f8a6d504f1c7c31539d323069p@chr7:7606139..7606151, -
6.08e-28FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_5d41cd698fe66a4c75a6ef4acb9ea9cbp1@ENST00000444849
6.08e-28FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_5d41cd698fe66a4c75a6ef4acb9ea9cbp1@ENST00000444849
1.11e-27FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_ec31b812e3fb1a2f6f1bcb313f76814dp2@PAX2
1.11e-27FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_ec31b812e3fb1a2f6f1bcb313f76814dp2@PAX2
2.09e-27FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_465495ba17953116fb9fc3a5b757c6c3p16@TJP2
2.09e-27FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_465495ba17953116fb9fc3a5b757c6c3p16@TJP2
2.35e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_40365627e0f7d8457821227bf43d97a5p@chr16:86604624..86604648, +
2.35e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_40365627e0f7d8457821227bf43d97a5p@chr16:86604624..86604648, +
3.45e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_d70cd2af82e037751810fd6eca786e7dp7@LRRN4
3.45e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_d70cd2af82e037751810fd6eca786e7dp7@LRRN4
7.25e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_5b35f1b89ff9fbf4f950d38717185612p@chr17:171082..171101, +
7.25e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_5b35f1b89ff9fbf4f950d38717185612p@chr17:171082..171101, +
4.96e-26FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_db4d55d569b3dbb6b308483b43ce210fp1@AB527789
4.96e-26FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_db4d55d569b3dbb6b308483b43ce210fp1@AB527789
7.1e-26FFCP PHASE2:Hg19::chr2:108994633..108994650,+#_d91313a646430302d8b06fd05926f54cp4@SULT1C4
7.1e-26FFCP PHASE1:Hg19::chr2:108994633..108994650,+#_d91313a646430302d8b06fd05926f54cp4@SULT1C4
9.68e-25FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_5723d0f09f399202d15c51cef34ecddcp4@DCDC2
9.68e-25FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_5723d0f09f399202d15c51cef34ecddcp4@DCDC2
1.6e-24FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_2642565a43d69257cab09c9abb4b792bp16@HOXA10
1.6e-24FFCP PHASE2:Hg19::chr2:177053683..177053697,-#_2642565a43d69257cab09c9abb4b792bp1@LOC401022
1.6e-24FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_2642565a43d69257cab09c9abb4b792bp16@HOXA10
1.6e-24FFCP PHASE1:Hg19::chr2:177053683..177053697,-#_2642565a43d69257cab09c9abb4b792bp1@LOC401022
1.66e-24FFCP PHASE1:Hg19::chr22:37823036..37823049,-#_af25d73a2593ff529ee41eb99f744304p1@ENST00000451509
1.66e-24FFCP PHASE2:Hg19::chr22:37823036..37823049,-#_af25d73a2593ff529ee41eb99f744304p1@ENST00000451509
1.87e-24FFCP PHASE2:Hg19::chr17:46675539..46675551,-#_ce68bb378f6cfb7cdb8b3c168c4ad69ap7@HOXB6
1.87e-24FFCP PHASE1:Hg19::chr17:46675539..46675551,-#_ce68bb378f6cfb7cdb8b3c168c4ad69ap7@HOXB6
2.63e-24FFCP PHASE2:Hg19::chr13:26619917..26619921,-#_3f1ad3209d27693fb5dadc6ea1fe46c4p@chr13:26619917..26619921, -
2.63e-24FFCP PHASE1:Hg19::chr13:26619917..26619921,-#_3f1ad3209d27693fb5dadc6ea1fe46c4p@chr13:26619917..26619921, -
2.91e-24FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_9631cf3896e231806eae527d184103b4p1@HOXD4
2.91e-24FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_9631cf3896e231806eae527d184103b4p1@HOXD4
2.98e-24FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_8a86de294bf176dd2f89da71fc928fb4p@chr7:98453821..98453843, -
2.98e-24FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_8a86de294bf176dd2f89da71fc928fb4p@chr7:98453821..98453843, -
3.49e-24FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_c0bb02d6ab8ea0c919c5fe48fe945798p18@SCNN1A
3.49e-24FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_c0bb02d6ab8ea0c919c5fe48fe945798p18@SCNN1A

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