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{{UBERON
{{UBERON
|id=UBERON:0010712
|alt_id=
|name=limb skeleton subdivision
|namespace=
|def="Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI]
|xref=VSAO:0005018
|is_a=UBERON:0004120;;UBERON:0010912
|synonym=
|comment=Editor notes - note the distinction between this and skeleton of limb
|comment=Editor notes - note the distinction between this and skeleton of limb
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010712
|is_a=UBERON:0010912
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002091;;UBERON:0002101
|name=limb skeleton subdivision
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002101;;UBERON:0002091;;UBERON:0002101
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=VSAO:0005018
}}
}}

Latest revision as of 18:09, 12 September 2014

Name:limb skeleton subdivision
Namespace:FANTOM
Definition:"Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI]
Xrefs:
links:
VSAO:0005018
Comments:Editor notes - note the distinction between this and skeleton of limb

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0002101(limb),UBERON:0002091(appendicular skeleton),UBERON:0002101(limb)



Children

is a:UBERON:0004381 (skeleton of limb)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010712 (limb skeleton subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_c7320ecea5c62d24fc50e902a3f24e88p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_c7320ecea5c62d24fc50e902a3f24e88p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_d9f977022243f29440fed2668b6fac85p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_d9f977022243f29440fed2668b6fac85p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_d9f977022243f29440fed2668b6fac85p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_d9f977022243f29440fed2668b6fac85p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_d9f977022243f29440fed2668b6fac85p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_d9f977022243f29440fed2668b6fac85p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_be3260ec839e15fade7bbb5df9fd5b9ep@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_be3260ec839e15fade7bbb5df9fd5b9ep@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_11fc135e6cc5248af693a4da0ad10a35p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_11fc135e6cc5248af693a4da0ad10a35p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_d1d5a1f9a38e9c7e2f643598c86cef03p@chr6:4490674..4490679, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_8a4175d69c5ddf215e70af5e922ea26fp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_8a4175d69c5ddf215e70af5e922ea26fp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_924be66ed467c6a1285bb63331a2ce97p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_924be66ed467c6a1285bb63331a2ce97p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_6bff88513b2ded08fd5b31b1f470277bp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_6bff88513b2ded08fd5b31b1f470277bp3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fc9717c8cf6269cbc1178366f0791ebbp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fc9717c8cf6269cbc1178366f0791ebbp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_0291754724ac881b045517b0cef2f866p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_0291754724ac881b045517b0cef2f866p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_c40c9bebbed150359ed3c19f97194c60p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_c40c9bebbed150359ed3c19f97194c60p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_e6bf2cc220868f6d12762fca73945f55p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_e6bf2cc220868f6d12762fca73945f55p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_0600614bf5b054e28704e645ebdd455dp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_0600614bf5b054e28704e645ebdd455dp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_0600614bf5b054e28704e645ebdd455dp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_0600614bf5b054e28704e645ebdd455dp@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_2d6b4c2b919a626b677c291308d87580p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_2d6b4c2b919a626b677c291308d87580p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_2d6b4c2b919a626b677c291308d87580p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_2d6b4c2b919a626b677c291308d87580p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_36a86fbc637f19751f3dedfd20b04305p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_36a86fbc637f19751f3dedfd20b04305p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_b4779e588543a75f0e46693caa3263b1p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_b4779e588543a75f0e46693caa3263b1p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_b4779e588543a75f0e46693caa3263b1p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_b4779e588543a75f0e46693caa3263b1p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_f9a48fcbfa0528ed9d87007314fa7d3dp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_f9a48fcbfa0528ed9d87007314fa7d3dp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_5b907ec8b6913e70962b716749ca70bdp@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_5b907ec8b6913e70962b716749ca70bdp@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_5b907ec8b6913e70962b716749ca70bdp@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_5b907ec8b6913e70962b716749ca70bdp@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_f3f65106c4d8ade9b48dae09c6646690p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_f3f65106c4d8ade9b48dae09c6646690p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_f6db2b261f17425aa73783f69595a60ap2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_f6db2b261f17425aa73783f69595a60ap2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_ff2de9ad756d3fb9a88e3c7ca552b0e4p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_ff2de9ad756d3fb9a88e3c7ca552b0e4p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_c8ec2c4bb1dc805b589cfb6e51e0c156p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_c8ec2c4bb1dc805b589cfb6e51e0c156p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_8a02f18ec6c4b90d821db2db1ff47866p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_8a02f18ec6c4b90d821db2db1ff47866p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_8a02f18ec6c4b90d821db2db1ff47866p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_8a02f18ec6c4b90d821db2db1ff47866p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_ddc572153c66564bba564e564258f001p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_ddc572153c66564bba564e564258f001p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_ddc572153c66564bba564e564258f001p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_ddc572153c66564bba564e564258f001p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_1ce40279c7473f67fd36185227c8d0cep@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_1ce40279c7473f67fd36185227c8d0cep@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_7ef0f577ef2a9e6c05662827f9415d02p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_7ef0f577ef2a9e6c05662827f9415d02p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_999d6e0d7251ce6c04ed7663244dd02ep@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_999d6e0d7251ce6c04ed7663244dd02ep@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_1d66daf77b27a7755c5030f2dc0751f1p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_1d66daf77b27a7755c5030f2dc0751f1p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_1922700cb51f3395bd603bd342d61fb8p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_1922700cb51f3395bd603bd342d61fb8p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7e893380de1f2cac6c587b18059d269ap7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7e893380de1f2cac6c587b18059d269ap7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_19293badd4f2e50f7616c69c1781e942p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_19293badd4f2e50f7616c69c1781e942p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_19293badd4f2e50f7616c69c1781e942p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_19293badd4f2e50f7616c69c1781e942p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_cda64612247ed778ef12921a5388a7d7p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_cda64612247ed778ef12921a5388a7d7p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_19158f4620d47d602ec085b4dae91d75p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_19158f4620d47d602ec085b4dae91d75p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_5ed2e37bca8d1823b31481d8f61fb404p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_5ed2e37bca8d1823b31481d8f61fb404p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_5ed2e37bca8d1823b31481d8f61fb404p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_5ed2e37bca8d1823b31481d8f61fb404p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_22970f7ff8f3ab78e5c5bf6f12917f1cp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_22970f7ff8f3ab78e5c5bf6f12917f1cp5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_22970f7ff8f3ab78e5c5bf6f12917f1cp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_22970f7ff8f3ab78e5c5bf6f12917f1cp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_56198ab328efc6ecf901325d3a99e993p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_56198ab328efc6ecf901325d3a99e993p2@Siglec15

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