FFCP PHASE1:Hg19::chr19:56186557..56186601,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:56186557..56186601,+
|short_description=p1@EPN1
|description=CAGE_peak_1_at_EPN1_5end
|association_with_transcript=0bp_to_ENST00000085079,ENST00000270460,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29924 | |EntrezGene=29924 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21604 | |HGNC=21604 | ||
|TSSclassifier=strong | |||
|UniProt=B4DU91,Q9Y6I3 | |UniProt=B4DU91,Q9Y6I3 | ||
|association_with_transcript=0bp_to_ENST00000085079,ENST00000270460,ENST00000544375,NM_001130072,NM_013333,uc002qlv.2,uc002qlw.2,uc010etd.2_5end | |||
|cluster_id=chr19:56186557..56186601,+ | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_EPN1_5end | |||
|id=chr19:56186557..56186601,+ | |||
|ontology_enrichment_celltype=CL:0002321!5.52e-16!248;CL:0000220!7.13e-16!246;CL:0000055!1.48e-15!180;CL:0000183!7.59e-12!59;CL:0000222!3.72e-11!119;CL:0000393!1.77e-10!60;CL:0000211!1.77e-10!60;CL:0000187!1.01e-09!54;CL:0000680!1.19e-09!57;CL:0000056!1.19e-09!57;CL:0000355!1.19e-09!57;CL:0000192!2.62e-09!42;CL:0000514!2.62e-09!42;CL:0000359!1.34e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.09e-07;32!CL:0000192;3.37e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.74e-16,250;CL:0000222,2.01e-11,121;CL:0000393,1.82e-10,61;CL:0000211,1.82e-10,61;CL:0000187,1.05e-09,55;CL:0000680,1.21e-09,58;CL:0000056,1.21e-09,58;CL:0000355,1.21e-09,58;CL:0000192,2.84e-09,43;CL:0000514,2.84e-09,43;CL:0000359,1.34e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;3.37e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!2.72e-19!347;UBERON:0000475!1.16e-17!365;UBERON:0000119!2.04e-17!312;UBERON:0000483!7.73e-17!309;UBERON:0002100!6.95e-16!216;UBERON:0005256!1.30e-14!143;UBERON:0000486!1.89e-13!82;UBERON:0000468!3.14e-13!659;UBERON:0004290!1.11e-12!70;UBERON:0000922!1.57e-12!612;UBERON:0000914!2.40e-12!83;UBERON:0002329!2.40e-12!83;UBERON:0003077!2.40e-12!83;UBERON:0003059!2.40e-12!83;UBERON:0007282!2.40e-12!83;UBERON:0009618!2.40e-12!83;UBERON:0007285!2.40e-12!83;UBERON:0003104!3.43e-12!238;UBERON:0009142!3.43e-12!238;UBERON:0002050!4.27e-12!605;UBERON:0005423!4.27e-12!605;UBERON:0000923!4.41e-12!604;UBERON:0005291!4.41e-12!604;UBERON:0006598!4.41e-12!604;UBERON:0002532!4.41e-12!604;UBERON:0000467!5.05e-11!625;UBERON:0001134!7.27e-11!61;UBERON:0002036!7.27e-11!61;UBERON:0003082!7.27e-11!61;UBERON:0000480!7.41e-11!626;UBERON:0000025!9.84e-11!194;UBERON:0002385!1.25e-10!63;UBERON:0001015!1.25e-10!63;UBERON:0000383!1.25e-10!63;UBERON:0004111!2.98e-10!241;UBERON:0000477!1.80e-09!286;UBERON:0003914!1.90e-09!118;UBERON:0000490!2.19e-08!138;UBERON:0000064!2.59e-08!219;UBERON:0009569!4.78e-08!113;UBERON:0003103!7.29e-08!69;UBERON:0001637!4.94e-07!42;UBERON:0003509!4.94e-07!42;UBERON:0004572!4.94e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.32e-17,309;UBERON:0000483,1.25e-16,306;UBERON:0002100,1.67e-15,199;UBERON:0003104,1.76e-15,160;UBERON:0009142,1.76e-15,160;UBERON:0007503,4.00e-15,78;UBERON:0000486,1.90e-13,83;UBERON:0007524,6.68e-13,73;UBERON:0003077,9.82e-13,72;UBERON:0007285,9.82e-13,72;UBERON:0002329,1.14e-12,71;UBERON:0003059,1.14e-12,71;UBERON:0007282,1.14e-12,71;UBERON:0004290,1.14e-12,71;UBERON:0009618,1.14e-12,71;UBERON:0005256,2.00e-12,122;UBERON:0000922,2.16e-11,592;UBERON:0001134,7.49e-11,62;UBERON:0002036,7.49e-11,62;UBERON:0003082,7.49e-11,62;UBERON:0002385,1.27e-10,64;UBERON:0001015,1.27e-10,64;UBERON:0000383,1.27e-10,64;UBERON:0005423,1.67e-10,581;UBERON:0000025,1.89e-10,192;UBERON:0004111,4.01e-10,240;UBERON:0000490,6.08e-10,148;UBERON:0003914,2.04e-09,117;UBERON:0000923,2.52e-08,560;UBERON:0010316,2.52e-08,560;UBERON:0005291,2.52e-08,560;UBERON:0006598,2.52e-08,560;UBERON:0010317,2.52e-08,560;UBERON:0002532,2.52e-08,560;UBERON:0009569,5.26e-08,112;UBERON:0002050,5.57e-08,564;UBERON:0003103,7.55e-08,68;UBERON:0001637,4.94e-07,42;UBERON:0003509,4.94e-07,42;UBERON:0004572,4.94e-07,42;UBERON:0006554,8.63e-07,47 | |||
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| ||
|short_description=p1@EPN1 | |||
}} | }} |
Latest revision as of 03:17, 20 September 2015
Short description: | p1@EPN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EPN1_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | 0bp_to_ENST00000085079, ENST00000270460, ENST00000544375, NM_001130072, NM_013333, uc002qlv.2, uc002qlw.2, uc010etd.2_5end |
EntrezGene: | EPN1 |
HGNC: | 21604 |
UniProt: | B4DU91Q9Y6I3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.74e-16 | 250 |
mesodermal cell | 2.01e-11 | 121 |
electrically responsive cell | 1.82e-10 | 61 |
electrically active cell | 1.82e-10 | 61 |
muscle cell | 1.05e-09 | 55 |
muscle precursor cell | 1.21e-09 | 58 |
myoblast | 1.21e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.21e-09 | 58 |
smooth muscle cell | 2.84e-09 | 43 |
smooth muscle myoblast | 2.84e-09 | 43 |
vascular associated smooth muscle cell | 1.34e-07 | 32 |