FFCP PHASE1:Hg19::chr19:57901208..57901280,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:57901208..57901280,+
|short_description=p1@ZNF548
|description=CAGE_peak_1_at_ZNF548_5end
|association_with_transcript=0bp_to_ENST00000336128,ENST00000366...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=147694 | |EntrezGene=147694 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26561 | |HGNC=26561 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NEK5 | |UniProt=Q8NEK5 | ||
|association_with_transcript=0bp_to_ENST00000336128,ENST00000366197,NM_001172773,NM_152909,uc002qom.2,uc002qon.2_5end | |||
|cluster_id=chr19:57901208..57901280,+ | |||
|description=CAGE_peak_1_at_ZNF548_5end | |||
|id=chr19:57901208..57901280,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.84e-10!18;CL:0000789!2.84e-10!18;CL:0002420!2.84e-10!18;CL:0002419!2.84e-10!18;CL:0000790!2.84e-10!18;CL:0000838!2.08e-09!52;CL:0000542!5.49e-09!53;CL:0000051!5.49e-09!53;CL:0000625!9.50e-08!11;CL:0000236!5.90e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.18e-10;18!CL:0000789;3.18e-10;18!CL:0002419;3.18e-10;18!CL:0000625;1.07e-07;11!CL:0000236;4.43e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.84e-10,18;CL:0000789,2.84e-10,18;CL:0002420,2.84e-10,18;CL:0002419,2.84e-10,18;CL:0000790,2.84e-10,18;CL:0000838,2.08e-09,52;CL:0000542,5.49e-09,53;CL:0000051,5.49e-09,53;CL:0000625,9.50e-08,11;CL:0000236,5.90e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;3.18e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.80e-29!115;UBERON:0001049!4.00e-13!57;UBERON:0005068!4.00e-13!57;UBERON:0006241!4.00e-13!57;UBERON:0007135!4.00e-13!57;UBERON:0002780!8.71e-12!41;UBERON:0001890!8.71e-12!41;UBERON:0006240!8.71e-12!41;UBERON:0003080!1.40e-11!42;UBERON:0002616!1.64e-11!59;UBERON:0000955!1.86e-10!69;UBERON:0006238!1.86e-10!69;UBERON:0001017!3.35e-10!82;UBERON:0005743!8.24e-10!86;UBERON:0001893!1.01e-09!34;UBERON:0002791!1.89e-09!33;UBERON:0002020!4.04e-09!34;UBERON:0003528!4.04e-09!34;UBERON:0001869!6.21e-09!32;UBERON:0003075!1.78e-08!86;UBERON:0007284!1.78e-08!86;UBERON:0000073!2.00e-08!94;UBERON:0001016!2.00e-08!94;UBERON:0002346!3.86e-08!90;UBERON:0002619!1.37e-07!22;UBERON:0001950!6.16e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.29e-09;41!UBERON:0001890;4.29e-09;41!UBERON:0007023;2.50e-08;114!UBERON:0002791;3.14e-08;32!UBERON:0000073;3.26e-08;53!UBERON:0002616;3.26e-08;53!UBERON:0001893;3.77e-08;34!UBERON:0001869;4.13e-08;32!UBERON:0003528;6.63e-08;34!UBERON:0002020;6.63e-08;34!UBERON:0002619;1.78e-07;22!UBERON:0001950;7.17e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.48e-29,114;UBERON:0001049,2.69e-13,56;UBERON:0005068,2.69e-13,56;UBERON:0006241,2.69e-13,56;UBERON:0007135,2.69e-13,56;UBERON:0000073,4.75e-13,53;UBERON:0002616,4.75e-13,53;UBERON:0002780,8.71e-12,41;UBERON:0001890,8.71e-12,41;UBERON:0003080,8.71e-12,41;UBERON:0006240,8.71e-12,41;UBERON:0000955,1.47e-10,68;UBERON:0006238,1.47e-10,68;UBERON:0001017,2.77e-10,81;UBERON:0001893,1.01e-09,34;UBERON:0003528,4.03e-09,34;UBERON:0002020,4.03e-09,34;UBERON:0002791,4.87e-09,32;UBERON:0001869,6.21e-09,32;UBERON:0001016,8.82e-09,89;UBERON:0003075,1.79e-08,82;UBERON:0007284,1.79e-08,82;UBERON:0002346,4.02e-08,86;UBERON:0002619,1.37e-07,22;UBERON:0001950,6.16e-07,20 | |||
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| ||
|short_description=p1@ZNF548 | |||
}} | }} |
Latest revision as of 05:39, 20 September 2015
Short description: | p1@ZNF548 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZNF548_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000336128, ENST00000366197, NM_001172773, NM_152909, uc002qom.2, uc002qon.2_5end |
EntrezGene: | ZNF548 |
HGNC: | 26561 |
UniProt: | Q8NEK5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.84e-10 | 18 |
alpha-beta T cell | 2.84e-10 | 18 |
immature T cell | 2.84e-10 | 18 |
mature T cell | 2.84e-10 | 18 |
immature alpha-beta T cell | 2.84e-10 | 18 |
lymphoid lineage restricted progenitor cell | 2.08e-09 | 52 |
lymphocyte | 5.49e-09 | 53 |
common lymphoid progenitor | 5.49e-09 | 53 |
CD8-positive, alpha-beta T cell | 9.50e-08 | 11 |
B cell | 5.90e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.48e-29 | 114 |
neural tube | 2.69e-13 | 56 |
neural rod | 2.69e-13 | 56 |
future spinal cord | 2.69e-13 | 56 |
neural keel | 2.69e-13 | 56 |
regional part of nervous system | 4.75e-13 | 53 |
regional part of brain | 4.75e-13 | 53 |
regional part of forebrain | 8.71e-12 | 41 |
forebrain | 8.71e-12 | 41 |
anterior neural tube | 8.71e-12 | 41 |
future forebrain | 8.71e-12 | 41 |
brain | 1.47e-10 | 68 |
future brain | 1.47e-10 | 68 |
central nervous system | 2.77e-10 | 81 |
telencephalon | 1.01e-09 | 34 |
brain grey matter | 4.03e-09 | 34 |
gray matter | 4.03e-09 | 34 |
regional part of telencephalon | 4.87e-09 | 32 |
cerebral hemisphere | 6.21e-09 | 32 |
nervous system | 8.82e-09 | 89 |
neural plate | 1.79e-08 | 82 |
presumptive neural plate | 1.79e-08 | 82 |
neurectoderm | 4.02e-08 | 86 |
regional part of cerebral cortex | 1.37e-07 | 22 |
neocortex | 6.16e-07 | 20 |