FFCP PHASE1:Hg19::chr1:12123317..12123328,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:12123317..12123328,+
|short_description=p8@TNFRSF8
|description=CAGE_peak_8_at_TNFRSF8_5end
|association_with_transcript=-105bp_to_ENST00000263932,NM_00124...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=943 | |EntrezGene=943 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11923 | |HGNC=11923 | ||
|TSSclassifier=strong | |||
|UniProt=P28908 | |UniProt=P28908 | ||
|association_with_transcript=-105bp_to_ENST00000263932,NM_001243,uc001atq.2,uc010obc.1_5end | |||
|cluster_id=chr1:12123317..12123328,+ | |||
|coexpression_cluster_id=C920 | |||
|description=CAGE_peak_8_at_TNFRSF8_5end | |||
|id=chr1:12123317..12123328,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.85e-14!5;CL:0000988!4.96e-13!182;CL:0002032!2.77e-12!165;CL:0000837!2.77e-12!165;CL:0000037!2.08e-11!172;CL:0000566!2.08e-11!172;CL:0000838!2.39e-11!52;CL:0000542!4.73e-11!53;CL:0000051!4.73e-11!53;CL:0000945!7.75e-10!24;CL:0000826!7.75e-10!24;CL:0000453!3.05e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;9.41e-24;5!CL:0000945;7.86e-15;24!CL:0000542;3.51e-09;53!CL:0000946;1.59e-08;1!CL:0000786;1.59e-08;1!CL:0002321;4.81e-08;15!CL:0000084;2.63e-07;25!CL:0000453;9.31e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.23e-23,5;CL:0000838,8.74e-19,52;CL:0000542,2.17e-18,53;CL:0000051,2.17e-18,53;CL:0000945,8.12e-15,24;CL:0000826,8.12e-15,24;CL:0000988,1.24e-11,177;CL:0002032,8.66e-09,161;CL:0000837,8.66e-09,161;CL:0000946,1.65e-08,1;CL:0000786,1.65e-08,1;CL:0000980,1.65e-08,1;CL:0000037,2.67e-08,168;CL:0000738,3.72e-08,136;CL:0000084,2.42e-07,25;CL:0000827,2.42e-07,25;CL:0002087,3.10e-07,115;CL:0002031,7.54e-07,120;CL:0000453,8.41e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000051;3.51e-09;53 | |||
|ontology_enrichment_disease=DOID:2531!1.74e-21!51;DOID:0060083!1.74e-21!51;DOID:1240!2.14e-13!39;DOID:1036!5.02e-11!8;DOID:0060058!8.79e-10!10;DOID:8692!2.76e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.29e-18;10!DOID:630;3.87e-09;1!DOID:0050177;3.87e-09;1!DOID:0050427;3.87e-09;1!DOID:2355;3.87e-09;1!DOID:0060060;1.59e-08;1!DOID:0060061;1.59e-08;1!DOID:8691;1.59e-08;1!DOID:2531;5.05e-07;51!DOID:0060083;5.05e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,9.64e-19,10;DOID:2531,1.83e-10,51;DOID:0060083,1.83e-10,51;DOID:630,3.58e-09,1;DOID:0050177,3.58e-09,1;DOID:0050427,3.58e-09,1;DOID:2355,4.19e-09,1;DOID:0060060,1.42e-08,1;DOID:0060061,1.42e-08,1;DOID:8691,1.42e-08,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;2.47e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,2.47e-07,10;UBERON:0000358,2.47e-07,10;UBERON:0000307,2.47e-07,10;UBERON:0000091,2.47e-07,10;UBERON:0000087,2.47e-07,10;UBERON:0007010,2.47e-07,10;UBERON:0007806,2.47e-07,10;UBERON:0008780,2.47e-07,10;UBERON:0005728,2.47e-07,10 | |||
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| ||
|short_description=p8@TNFRSF8 | |||
}} | }} |
Latest revision as of 12:57, 16 September 2015
Short description: | p8@TNFRSF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TNFRSF8_5end |
Coexpression cluster: | C920_anaplastic_adult_hereditary_cord_hairy_immature_xeroderma |
Association with transcript: | -105bp_to_ENST00000263932, NM_001243, uc001atq.2, uc010obc.1_5end |
EntrezGene: | TNFRSF8 |
HGNC: | 11923 |
UniProt: | P28908 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.23e-23 | 5 |
lymphoid lineage restricted progenitor cell | 8.74e-19 | 52 |
lymphocyte | 2.17e-18 | 53 |
common lymphoid progenitor | 2.17e-18 | 53 |
lymphocyte of B lineage | 8.12e-15 | 24 |
pro-B cell | 8.12e-15 | 24 |
hematopoietic cell | 1.24e-11 | 177 |
hematopoietic oligopotent progenitor cell | 8.66e-09 | 161 |
hematopoietic multipotent progenitor cell | 8.66e-09 | 161 |
antibody secreting cell | 1.65e-08 | 1 |
plasma cell | 1.65e-08 | 1 |
plasmablast | 1.65e-08 | 1 |
hematopoietic stem cell | 2.67e-08 | 168 |
leukocyte | 3.72e-08 | 136 |
T cell | 2.42e-07 | 25 |
pro-T cell | 2.42e-07 | 25 |
nongranular leukocyte | 3.10e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 7.54e-07 | 120 |
Langerhans cell | 8.41e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 2.47e-07 | 10 |
blastocyst | 2.47e-07 | 10 |
blastula | 2.47e-07 | 10 |
bilaminar disc | 2.47e-07 | 10 |
inner cell mass | 2.47e-07 | 10 |
cleaving embryo | 2.47e-07 | 10 |
connecting stalk | 2.47e-07 | 10 |
inner cell mass derived epiblast | 2.47e-07 | 10 |
extraembryonic mesoderm | 2.47e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 9.64e-19 | 10 |
hematologic cancer | 1.83e-10 | 51 |
immune system cancer | 1.83e-10 | 51 |
genetic disease | 3.58e-09 | 1 |
monogenic disease | 3.58e-09 | 1 |
xeroderma pigmentosum | 3.58e-09 | 1 |
anemia | 4.19e-09 | 1 |
non-Hodgkin lymphoma | 1.42e-08 | 1 |
cutaneous T cell lymphoma | 1.42e-08 | 1 |
mycosis fungoides | 1.42e-08 | 1 |