FFCP PHASE1:Hg19::chr1:119957771..119957778,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3284 | |EntrezGene=3284 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5218 | |HGNC=5218 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471656,uc001eht.2,uc001ehu.2_5end | |association_with_transcript=0bp_to_ENST00000471656,uc001eht.2,uc001ehu.2_5end | ||
|cluster_id=chr1:119957771..119957778,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_1_at_HSD3B2_5end | |description=CAGE_peak_1_at_HSD3B2_5end | ||
|id=chr1:119957771..119957778,+ | |id=chr1:119957771..119957778,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.06e-14;10!UBERON:0005564;3.06e-14;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.38e-13!115;UBERON:0001155!6.27e-12!9;UBERON:0000160!1.15e-10!27;UBERON:0005409!2.00e-10!35;UBERON:0000059!8.78e-10!11;UBERON:0004177!1.16e-08!7;UBERON:0002336!2.89e-08!1;UBERON:0001018!2.89e-08!1;UBERON:0002473!2.89e-08!1;UBERON:0005340!2.89e-08!1;UBERON:0002316!2.89e-08!1;UBERON:0003544!2.89e-08!1;UBERON:0001020!2.89e-08!1;UBERON:0005970!2.89e-08!1;UBERON:0002437!2.89e-08!1;UBERON:0001882!3.10e-08!1;UBERON:0005403!3.10e-08!1;UBERON:0001154!7.45e-08!1;UBERON:0001153!7.45e-08!1;UBERON:0002135!9.72e-08!1;UBERON:0002372!1.54e-07!1;UBERON:0001961!1.54e-07!1;UBERON:0001744!1.54e-07!1;UBERON:0001735!1.54e-07!1;UBERON:0006834!1.64e-07!1;UBERON:0002370!2.50e-07!4;UBERON:0005058!2.50e-07!4;UBERON:0009113!2.50e-07!4;UBERON:0003295!2.50e-07!4;UBERON:0005562!2.50e-07!4 | |ontology_enrichment_uberon=UBERON:0007023!9.38e-13!115;UBERON:0001155!6.27e-12!9;UBERON:0000160!1.15e-10!27;UBERON:0005409!2.00e-10!35;UBERON:0000059!8.78e-10!11;UBERON:0004177!1.16e-08!7;UBERON:0002336!2.89e-08!1;UBERON:0001018!2.89e-08!1;UBERON:0002473!2.89e-08!1;UBERON:0005340!2.89e-08!1;UBERON:0002316!2.89e-08!1;UBERON:0003544!2.89e-08!1;UBERON:0001020!2.89e-08!1;UBERON:0005970!2.89e-08!1;UBERON:0002437!2.89e-08!1;UBERON:0001882!3.10e-08!1;UBERON:0005403!3.10e-08!1;UBERON:0001154!7.45e-08!1;UBERON:0001153!7.45e-08!1;UBERON:0002135!9.72e-08!1;UBERON:0002372!1.54e-07!1;UBERON:0001961!1.54e-07!1;UBERON:0001744!1.54e-07!1;UBERON:0001735!1.54e-07!1;UBERON:0006834!1.64e-07!1;UBERON:0002370!2.50e-07!4;UBERON:0005058!2.50e-07!4;UBERON:0009113!2.50e-07!4;UBERON:0003295!2.50e-07!4;UBERON:0005562!2.50e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002336;5.53e-17;1!UBERON:0011215;5.53e-17;1!UBERON:0001018;5.53e-17;1!UBERON:0002473;5.53e-17;1!UBERON:0005340;5.53e-17;1!UBERON:0003544;5.53e-17;1!UBERON:0005970;5.53e-17;1!UBERON:0002316;5.53e-17;1!UBERON:0001020;5.53e-17;1!UBERON:0002437;5.53e-17;1!UBERON:0001882;6.47e-17;1!UBERON:0005403;6.47e-17;1!UBERON:0005162;3.71e-09;2!UBERON:0000122;3.71e-09;2!UBERON:0002370;7.49e-09;2!UBERON:0005058;7.49e-09;2!UBERON:0009113;7.49e-09;2!UBERON:0000473;1.53e-08;8!UBERON:0000160;2.58e-08;17!UBERON:0001155;8.75e-08;9!UBERON:0000991;4.41e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002336,5.53e-17,1;UBERON:0011215,5.53e-17,1;UBERON:0001018,5.53e-17,1;UBERON:0002473,5.53e-17,1;UBERON:0005340,5.53e-17,1;UBERON:0003544,5.53e-17,1;UBERON:0005970,5.53e-17,1;UBERON:0002316,5.53e-17,1;UBERON:0001020,5.53e-17,1;UBERON:0002437,5.53e-17,1;UBERON:0001882,6.47e-17,1;UBERON:0005403,6.47e-17,1;UBERON:0005162,3.71e-09,2;UBERON:0000122,3.71e-09,2;UBERON:0000473,1.59e-08,8;UBERON:0000160,2.51e-08,17;UBERON:0001155,8.31e-08,9;UBERON:0000991,4.51e-07,21;UBERON:0009196,4.51e-07,21;UBERON:0009117,4.51e-07,21;UBERON:0005564,4.51e-07,21;UBERON:0004176,8.96e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,160.694854617342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.176915129006678,8.55442202907076,0,0,0,42.5975160437879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04572893726493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5256844293237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35378591028663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0,0,0,0,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.771741581079447,8.52382285965433,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,1.28823786971007,2.14371304124943,0,0,0,0,0.0645889098360061,1.36564371450887,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,160.694854617342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.176915129006678,8.55442202907076,0,0,0,42.5975160437879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04572893726493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5256844293237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35378591028663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0,0,0,0,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.771741581079447,8.52382285965433,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,1.28823786971007,2.14371304124943,0,0,0,0,0.0645889098360061,1.36564371450887,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@HSD3B2 | |short_description=p1@HSD3B2 | ||
}} | }} |
Latest revision as of 11:58, 16 September 2015
Short description: | p1@HSD3B2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HSD3B2_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000471656, uc001eht.2, uc001ehu.2_5end |
EntrezGene: | HSD3B2 |
HGNC: | 5218 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corpus callosum | 5.53e-17 | 1 |
central nervous system cell part cluster | 5.53e-17 | 1 |
axon tract | 5.53e-17 | 1 |
intercerebral commissure | 5.53e-17 | 1 |
dorsal telencephalic commissure | 5.53e-17 | 1 |
brain white matter | 5.53e-17 | 1 |
brain commissure | 5.53e-17 | 1 |
white matter | 5.53e-17 | 1 |
nervous system commissure | 5.53e-17 | 1 |
cerebral hemisphere white matter | 5.53e-17 | 1 |
nucleus accumbens | 6.47e-17 | 1 |
ventral striatum | 6.47e-17 | 1 |
multi cell component structure | 3.71e-09 | 2 |
neuron projection bundle | 3.71e-09 | 2 |
testis | 1.59e-08 | 8 |
intestine | 2.51e-08 | 17 |
colon | 8.31e-08 | 9 |
gonad | 4.51e-07 | 21 |
indifferent external genitalia | 4.51e-07 | 21 |
indifferent gonad | 4.51e-07 | 21 |
gonad primordium | 4.51e-07 | 21 |
external genitalia | 8.96e-07 | 22 |