FFCP PHASE1:Hg19::chr6:159084146..159084175,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=94120 | |EntrezGene=94120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15587 | |HGNC=15587 | ||
|TSSclassifier=strong | |||
|UniProt=F8W7H4 | |UniProt=F8W7H4 | ||
|association_with_transcript=-19bp_to_ENST00000367081_5end | |association_with_transcript=-19bp_to_ENST00000367081_5end | ||
|cluster_id=chr6:159084146..159084175,+ | |||
|coexpression_cluster_id=C12 | |coexpression_cluster_id=C12 | ||
|description=CAGE_peak_2_at_SYTL3_5end | |description=CAGE_peak_2_at_SYTL3_5end | ||
|id=chr6:159084146..159084175,+ | |id=chr6:159084146..159084175,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.41e-26!140;CL:0000037!7.62e-21!172;CL:0000566!7.62e-21!172;CL:0000766!1.50e-18!76;CL:0000988!1.66e-18!182;CL:0002031!5.49e-18!124;CL:0002032!4.50e-17!165;CL:0000837!4.50e-17!165;CL:0002087!2.56e-16!119;CL:0000791!1.80e-13!18;CL:0000789!1.80e-13!18;CL:0002420!1.80e-13!18;CL:0002419!1.80e-13!18;CL:0000790!1.80e-13!18;CL:0000839!4.37e-13!70;CL:0000084!1.54e-12!25;CL:0000827!1.54e-12!25;CL:0000557!6.67e-12!71;CL:0000763!2.62e-11!112;CL:0000049!2.62e-11!112;CL:0002057!1.75e-10!42;CL:0000094!1.91e-09!8;CL:0000860!2.42e-09!45;CL:0002194!6.04e-09!63;CL:0000576!6.04e-09!63;CL:0000040!6.04e-09!63;CL:0000559!6.04e-09!63;CL:0000625!7.60e-09!11;CL:0002274!9.18e-09!5;CL:0000457!9.18e-09!5;CL:0002191!9.18e-09!5;CL:0000097!9.18e-09!5;CL:0000831!9.18e-09!5;CL:0002028!9.18e-09!5;CL:0002009!1.94e-08!65;CL:0002393!5.22e-08!9;CL:0002397!5.22e-08!9;CL:0000624!2.10e-07!6 | |ontology_enrichment_celltype=CL:0000738!1.41e-26!140;CL:0000037!7.62e-21!172;CL:0000566!7.62e-21!172;CL:0000766!1.50e-18!76;CL:0000988!1.66e-18!182;CL:0002031!5.49e-18!124;CL:0002032!4.50e-17!165;CL:0000837!4.50e-17!165;CL:0002087!2.56e-16!119;CL:0000791!1.80e-13!18;CL:0000789!1.80e-13!18;CL:0002420!1.80e-13!18;CL:0002419!1.80e-13!18;CL:0000790!1.80e-13!18;CL:0000839!4.37e-13!70;CL:0000084!1.54e-12!25;CL:0000827!1.54e-12!25;CL:0000557!6.67e-12!71;CL:0000763!2.62e-11!112;CL:0000049!2.62e-11!112;CL:0002057!1.75e-10!42;CL:0000094!1.91e-09!8;CL:0000860!2.42e-09!45;CL:0002194!6.04e-09!63;CL:0000576!6.04e-09!63;CL:0000040!6.04e-09!63;CL:0000559!6.04e-09!63;CL:0000625!7.60e-09!11;CL:0002274!9.18e-09!5;CL:0000457!9.18e-09!5;CL:0002191!9.18e-09!5;CL:0000097!9.18e-09!5;CL:0000831!9.18e-09!5;CL:0002028!9.18e-09!5;CL:0002009!1.94e-08!65;CL:0002393!5.22e-08!9;CL:0002397!5.22e-08!9;CL:0000624!2.10e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000094;1.16e-23;8!CL:0000097;3.54e-21;5!CL:0000081;6.25e-17;11!CL:0000767;8.59e-13;3!CL:0000226;1.27e-12;3!CL:0000842;1.27e-12;3!CL:0000163;1.33e-11;9!CL:0000771;3.03e-09;2!CL:0000625;3.14e-08;11!CL:0000791;6.73e-07;18!CL:0000789;6.73e-07;18!CL:0002419;6.73e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,7.61e-24,8;CL:0000097,3.78e-21,5;CL:0002028,3.78e-21,5;CL:0000738,3.62e-18,136;CL:0000081,4.63e-17,11;CL:0000037,2.32e-13,168;CL:0000766,3.29e-13,72;CL:0000767,7.96e-13,3;CL:0000226,1.55e-12,3;CL:0000842,1.55e-12,3;CL:0000988,2.51e-12,177;CL:0000163,1.37e-11,9;CL:0002032,7.75e-10,161;CL:0000837,7.75e-10,161;CL:0000771,2.92e-09,2;CL:0000625,3.39e-08,11;CL:0000763,1.78e-07,108;CL:0000049,1.78e-07,108;CL:0002031,5.99e-07,120;CL:0000791,6.81e-07,18;CL:0000789,6.81e-07,18;CL:0002420,6.81e-07,18;CL:0002419,6.81e-07,18;CL:0000790,6.81e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;6.73e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.51e-20!102;UBERON:0003061!3.51e-20!102;UBERON:0002193!6.02e-19!112;UBERON:0007023!1.16e-14!115;UBERON:0000178!1.53e-10!15;UBERON:0000179!1.53e-10!15;UBERON:0000463!1.53e-10!15;UBERON:0002371!3.11e-10!80;UBERON:0001474!7.32e-09!86;UBERON:0002405!2.51e-08!115 | |ontology_enrichment_uberon=UBERON:0002390!3.51e-20!102;UBERON:0003061!3.51e-20!102;UBERON:0002193!6.02e-19!112;UBERON:0007023!1.16e-14!115;UBERON:0000178!1.53e-10!15;UBERON:0000179!1.53e-10!15;UBERON:0000463!1.53e-10!15;UBERON:0002371!3.11e-10!80;UBERON:0001474!7.32e-09!86;UBERON:0002405!2.51e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.08e-28;15!UBERON:0000179;1.08e-28;15!UBERON:0000463;1.08e-28;15!UBERON:0002390;4.59e-16;32!UBERON:0002193;9.44e-11;42!UBERON:0002370;2.38e-09;2!UBERON:0005058;2.38e-09;2!UBERON:0009113;2.38e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.12e-28,15;UBERON:0000179,1.12e-28,15;UBERON:0000463,1.12e-28,15;UBERON:0002390,1.01e-16,98;UBERON:0003061,1.01e-16,98;UBERON:0002193,4.27e-16,108 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.5686779951788,3.45446458287491,2.78669021968937,0,0,0,0,0,0.293600439334847,0.553995408531877,1.20326668482085,1.30206522429511,0.447830948479849,0.32389366601898,0.515151135268373,0.290796477559129,0,0.242584061187816,0,0,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0,0.449446968890169,0.612167784741805,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0.316462387440884,0.422510572623884,0.637812899895131,0.628975936525128,3.93150209012733,3.60424542819615,1.76798145366788,0,0.19891667719909,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,0.526768169550154,2.9506465517075,0.393010762749165,0.411202997999018,0,0.32592226663359,0,0,0,0.294605907474837,0,0,0.25618263945135,0,0,0,0,17.4978144531231,21.9383479033565,12.5442628565972,0.113309342697566,0.766440987203842,0,0,1.27426165729639,0.651083453856419,0,0.903450714466637,0.255973222308837,0,1.18388626022008,1.64225599384209,1.61285394579786,0.267440195783507,3.62061009706997,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0,0.132957960518865,1.43094374583205,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58902087180316,11.6334079244498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3312544716067,21.2196725971875,36.9044045662574,68.7452177798906,42.9224273649692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,1.43248770591916,0,0.788123040807709,0.431255149719035,2.05348858047597,0,0,0,0,0,3.74503511973591,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27444828735176,4.31428401637234,3.09509917629989,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0.676695028044854,0,0,0,0,0,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,2.53723804616085,0,3.41788312304498,1.42939065274673,1.23408681925858,1.94541993357815,1.62009431171434,3.17250070517708,0,0,0,0,0,1.35169502361987,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0.296964680832639,0,0,0,0,0.16480387422676,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.628817220398664,0,1.48849806543585,0,0,0,0.544017803369474,0,0,0.327872630709804,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,1.48863353516788,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.627944742804112,0,0,0,0,0,0.142953088353313,0,0,0.347716544605159,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0,0,0,0.308696632431779,0,0,1.22574160876953,0,0,0,0,0,0.187967835959707,0.322289439867886,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0.135982980381829,0,0.5290268405154,0,0.924351257262837,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0.103432995861895,0.639701945702943,1.66645102024618,11.3676481311371,19.1190120031242,0,0.318235791390825,1.81905470062397,0.217716747896961,0.684466602170562,0.336760265072938,0.502055437748735,0.332660356546013,0,0,0,0,0,0.855690109280065,0,0,2.41528552309231,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.5686779951788,3.45446458287491,2.78669021968937,0,0,0,0,0,0.293600439334847,0.553995408531877,1.20326668482085,1.30206522429511,0.447830948479849,0.32389366601898,0.515151135268373,0.290796477559129,0,0.242584061187816,0,0,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0,0.449446968890169,0.612167784741805,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0.316462387440884,0.422510572623884,0.637812899895131,0.628975936525128,3.93150209012733,3.60424542819615,1.76798145366788,0,0.19891667719909,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,0.526768169550154,2.9506465517075,0.393010762749165,0.411202997999018,0,0.32592226663359,0,0,0,0.294605907474837,0,0,0.25618263945135,0,0,0,0,17.4978144531231,21.9383479033565,12.5442628565972,0.113309342697566,0.766440987203842,0,0,1.27426165729639,0.651083453856419,0,0.903450714466637,0.255973222308837,0,1.18388626022008,1.64225599384209,1.61285394579786,0.267440195783507,3.62061009706997,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0,0.132957960518865,1.43094374583205,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58902087180316,11.6334079244498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3312544716067,21.2196725971875,36.9044045662574,68.7452177798906,42.9224273649692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,1.43248770591916,0,0.788123040807709,0.431255149719035,2.05348858047597,0,0,0,0,0,3.74503511973591,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27444828735176,4.31428401637234,3.09509917629989,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0.676695028044854,0,0,0,0,0,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,2.53723804616085,0,3.41788312304498,1.42939065274673,1.23408681925858,1.94541993357815,1.62009431171434,3.17250070517708,0,0,0,0,0,1.35169502361987,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0.296964680832639,0,0,0,0,0.16480387422676,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.628817220398664,0,1.48849806543585,0,0,0,0.544017803369474,0,0,0.327872630709804,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,1.48863353516788,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.627944742804112,0,0,0,0,0,0.142953088353313,0,0,0.347716544605159,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0,0,0,0.308696632431779,0,0,1.22574160876953,0,0,0,0,0,0.187967835959707,0.322289439867886,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0.135982980381829,0,0.5290268405154,0,0.924351257262837,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0.103432995861895,0.639701945702943,1.66645102024618,11.3676481311371,19.1190120031242,0,0.318235791390825,1.81905470062397,0.217716747896961,0.684466602170562,0.336760265072938,0.502055437748735,0.332660356546013,0,0,0,0,0,0.855690109280065,0,0,2.41528552309231,0 | ||
|short_description=p2@SYTL3 | |short_description=p2@SYTL3 | ||
}} | }} |
Latest revision as of 12:13, 16 September 2015
Short description: | p2@SYTL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYTL3_5end |
Coexpression cluster: | C12_Mast_Basophils_immature_chorionic_mature_CD14_Eosinophils |
Association with transcript: | -19bp_to_ENST00000367081_5end |
EntrezGene: | SYTL3 |
HGNC: | 15587 |
UniProt: | F8W7H4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 7.61e-24 | 8 |
mast cell | 3.78e-21 | 5 |
basophil mast progenitor cell | 3.78e-21 | 5 |
leukocyte | 3.62e-18 | 136 |
blood cell | 4.63e-17 | 11 |
hematopoietic stem cell | 2.32e-13 | 168 |
myeloid leukocyte | 3.29e-13 | 72 |
basophil | 7.96e-13 | 3 |
single nucleate cell | 1.55e-12 | 3 |
mononuclear cell | 1.55e-12 | 3 |
hematopoietic cell | 2.51e-12 | 177 |
endocrine cell | 1.37e-11 | 9 |
hematopoietic oligopotent progenitor cell | 7.75e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.75e-10 | 161 |
eosinophil | 2.92e-09 | 2 |
CD8-positive, alpha-beta T cell | 3.39e-08 | 11 |
myeloid cell | 1.78e-07 | 108 |
common myeloid progenitor | 1.78e-07 | 108 |
hematopoietic lineage restricted progenitor cell | 5.99e-07 | 120 |
mature alpha-beta T cell | 6.81e-07 | 18 |
alpha-beta T cell | 6.81e-07 | 18 |
immature T cell | 6.81e-07 | 18 |
mature T cell | 6.81e-07 | 18 |
immature alpha-beta T cell | 6.81e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
blood | 1.12e-28 | 15 |
haemolymphatic fluid | 1.12e-28 | 15 |
organism substance | 1.12e-28 | 15 |
hematopoietic system | 1.01e-16 | 98 |
blood island | 1.01e-16 | 98 |
hemolymphoid system | 4.27e-16 | 108 |