FFCP PHASE1:Hg19::chr18:21269455..21269466,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3909 | |EntrezGene=3909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |HGNC=6483 | ||
|TSSclassifier=strong | |||
|UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | |UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | ||
|association_with_transcript=-95bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | |association_with_transcript=-95bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | ||
|cluster_id=chr18:21269455..21269466,+ | |||
|coexpression_cluster_id=C96 | |coexpression_cluster_id=C96 | ||
|description=CAGE_peak_8_at_LAMA3_5end | |description=CAGE_peak_8_at_LAMA3_5end | ||
|id=chr18:21269455..21269466,+ | |id=chr18:21269455..21269466,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000228;3.28e-23;1!CL:0002372;3.28e-23;1!CL:0000313;3.28e-23;1!CL:0000159;2.59e-12;2!CL:0002573;1.21e-08;2!CL:0000307;1.21e-08;3!CL:0000056;8.61e-07;4!CL:0000737;8.61e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,2.10e-23,1;CL:0002372,2.10e-23,1;CL:0000313,4.10e-23,1;CL:0000159,2.90e-12,2;CL:0000068,1.12e-08,3;CL:0000069,1.12e-08,3;CL:0000307,1.12e-08,3;CL:0000377,1.12e-08,3;CL:0002573,1.51e-08,2;CL:0000737,7.70e-07,4;CL:0000515,7.70e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000377;1.21e-08;3!CL:0000515;8.61e-07;4 | |||
|ontology_enrichment_disease=DOID:305!4.64e-07!106 | |ontology_enrichment_disease=DOID:305!4.64e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:2152;3.28e-23;1!DOID:2394;3.14e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,4.10e-23,1;DOID:2394,2.95e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.16e-09!115 | |ontology_enrichment_uberon=UBERON:0007023!1.16e-09!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004911;3.28e-23;1!UBERON:0004909;2.59e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,4.10e-23,1;UBERON:0004909,2.90e-12,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,5.58240934377942,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0.741568885568859,0,0,0,0,0,0,0,0,0.694281003215189,0,0.419499436209906,0.275118041940067,0,0,0,0.33472061276467,0,0,0,0.735326160691737,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0.245668634623536,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0.300476117813194,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.185176890317059,0,0,0,0,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0.483437798366489,0.40101294060657,0.0920809889358963,0.229628896329213,0,0,0,0,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0.354761064070598,0,0.329294892959902,0.379473173765715,0,0,1.34060455107157,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0,0,0,0.439524537815682,0.121360521749513,0,0,0.47748896947538,0,0.921482106297696,0,0.140669416410513,1.11308705022906,0,0,0.398495976502139,0.552567831062295,0,0,0,0.311039587661807,0.179736702294654,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0.260427761085233,0,0.724999575434793,0.341380344856499,0,0,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0.219385397153973,0.21787692703798,0.41827123283581,0.692552326534174,0.113942055847001,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0.326465616318295,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0.30607276163049,0.505492637027904,0.300646838828985,0.414752765588989,0.664653872707185,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0,0.195984794828755,0.522355239482415,0.17472666824203,0,0.0967563312890851,0.292357268344742,0.0821154570532092,0.290967049465258,0,0,0,0,0.253243183823515,0,0.64127056201227,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0.410716136675979,0,0,1.31443677139657,0,0,0,0.599037001496973,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242998226632099,0.335434687599266,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.640724475406168,0.471612915298998,0.828478110694391,0.496166021811951,0,0,0,0.544017803369474,0.7520696820681,0,0,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0.757612021100357,0.754703705257725,0,0,0,0,0,0,0,0,0,0,0,0,1.52322084867518,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0.308801447160972,0,0.353378291891762,0.38582807654183,0.168942440653073,0,0.690860683462397,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0,0.622077260032973,0,0,0,0,0,0,0,0,0,11.1195060451767,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,0,0.196295437002051,0.11796972334774,0,0.115525666150338,0,0.690359926060101,0,0.300841313397029,0.20170506870352,0,0,0,0.147856086217045,0.0675375846183947,0,0,0.0634158101939068,0,0,0.992422356778588,0,0.255524855279191,0,0,0.606965604236632,0,0.266107110487916,0,0.342976018874837,0.271878931907327,0.0657727735628491,0.827356886187777,0.222462803784138,0.313972371402056,0.157115589916002,0,0,0.431855182437243,0.47775168788705,0.357382720883282,0.316027223465453,0,0,0.801711364730253,0,0,0,0,1.06498800657509,0.766920642832419,0,0,0.31020638566432,0,1.11855431797792,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0.118920090777569,0.11294608203896,0,0.150962843566674,0.231522474323834,0,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0,0.0939839179798536,0,0,0.178553938605658,0,0.320965466756673,0,0.458729283404541,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0.0673520530145875,0.143444410785353,0.99798106963804,0.244209805832924,0.213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|phase1_expression=0,0,0,0,0,0,0,0,0,0,5.58240934377942,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0.741568885568859,0,0,0,0,0,0,0,0,0.694281003215189,0,0.419499436209906,0.275118041940067,0,0,0,0.33472061276467,0,0,0,0.735326160691737,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0.245668634623536,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0.300476117813194,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.185176890317059,0,0,0,0,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0.483437798366489,0.40101294060657,0.0920809889358963,0.229628896329213,0,0,0,0,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0.354761064070598,0,0.329294892959902,0.379473173765715,0,0,1.34060455107157,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0,0,0,0.439524537815682,0.121360521749513,0,0,0.47748896947538,0,0.921482106297696,0,0.140669416410513,1.11308705022906,0,0,0.398495976502139,0.552567831062295,0,0,0,0.311039587661807,0.179736702294654,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0.260427761085233,0,0.724999575434793,0.341380344856499,0,0,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0.219385397153973,0.21787692703798,0.41827123283581,0.692552326534174,0.113942055847001,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0.326465616318295,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0.30607276163049,0.505492637027904,0.300646838828985,0.414752765588989,0.664653872707185,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0,0.195984794828755,0.522355239482415,0.17472666824203,0,0.0967563312890851,0.292357268344742,0.0821154570532092,0.290967049465258,0,0,0,0,0.253243183823515,0,0.64127056201227,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0.410716136675979,0,0,1.31443677139657,0,0,0,0.599037001496973,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242998226632099,0.335434687599266,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.640724475406168,0.471612915298998,0.828478110694391,0.496166021811951,0,0,0,0.544017803369474,0.7520696820681,0,0,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0.757612021100357,0.754703705257725,0,0,0,0,0,0,0,0,0,0,0,0,1.52322084867518,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0.308801447160972,0,0.353378291891762,0.38582807654183,0.168942440653073,0,0.690860683462397,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0,0.622077260032973,0,0,0,0,0,0,0,0,0,11.1195060451767,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,0,0.196295437002051,0.11796972334774,0,0.115525666150338,0,0.690359926060101,0,0.300841313397029,0.20170506870352,0,0,0,0.147856086217045,0.0675375846183947,0,0,0.0634158101939068,0,0,0.992422356778588,0,0.255524855279191,0,0,0.606965604236632,0,0.266107110487916,0,0.342976018874837,0.271878931907327,0.0657727735628491,0.827356886187777,0.222462803784138,0.313972371402056,0.157115589916002,0,0,0.431855182437243,0.47775168788705,0.357382720883282,0.316027223465453,0,0,0.801711364730253,0,0,0,0,1.06498800657509,0.766920642832419,0,0,0.31020638566432,0,1.11855431797792,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0.118920090777569,0.11294608203896,0,0.150962843566674,0.231522474323834,0,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0,0.0939839179798536,0,0,0.178553938605658,0,0.320965466756673,0,0.458729283404541,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0.0673520530145875,0.143444410785353,0.99798106963804,0.244209805832924,0.213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| ||
|short_description=p8@LAMA3 | |short_description=p8@LAMA3 | ||
}} | }} |
Latest revision as of 23:55, 18 September 2015
Short description: | p8@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LAMA3_5end |
Coexpression cluster: | C96_non_acute_tonsil_spleen_Burkitt_lymphoma_appendix |
Association with transcript: | -95bp_to_ENST00000313654, ENST00000399516, ENST00000416669, ENST00000538801, NM_001127717, NM_198129, uc002kuq.2, uc002kur.2, uc010dlv.1_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q16787Q6VU67F5GWM0F5H8G3Q566Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 2.10e-23 | 1 |
myotube | 2.10e-23 | 1 |
serous secreting cell | 4.10e-23 | 1 |
seromucus secreting cell | 2.90e-12 | 2 |
duct epithelial cell | 1.12e-08 | 3 |
branched duct epithelial cell | 1.12e-08 | 3 |
tracheal epithelial cell | 1.12e-08 | 3 |
tracheoblast | 1.12e-08 | 3 |
Schwann cell | 1.51e-08 | 2 |
striated muscle cell | 7.70e-07 | 4 |
skeletal muscle myoblast | 7.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 4.10e-23 | 1 |
epithelium of gonad | 2.90e-12 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 4.10e-23 | 1 |
ovarian cancer | 2.95e-07 | 14 |