FFCP PHASE1:Hg19::chr4:48485486..48485499,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=201780 | |EntrezGene=201780 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22980 | |HGNC=22980 | ||
|TSSclassifier=strong | |||
|UniProt=Q96EP9 | |UniProt=Q96EP9 | ||
|association_with_transcript=126bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | |association_with_transcript=126bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | ||
|cluster_id=chr4:48485486..48485499,+ | |||
|coexpression_cluster_id=C135 | |coexpression_cluster_id=C135 | ||
|description=CAGE_peak_2_at_SLC10A4_5end | |description=CAGE_peak_2_at_SLC10A4_5end | ||
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|ontology_enrichment_celltype=CL:0002319!2.90e-09!25;CL:0000047!4.23e-07!8;CL:0000133!5.30e-07!59 | |ontology_enrichment_celltype=CL:0002319!2.90e-09!25;CL:0000047!4.23e-07!8;CL:0000133!5.30e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000333;1.51e-15;5!CL:0000047;1.57e-10;2 | |ontology_enrichment_celltype_v019=CL:0000333;1.51e-15;5!CL:0000047;1.57e-10;2 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.63e-07;3!UBERON:0003057;2.63e-07;3 | |ontology_enrichment_development_v019=UBERON:0006241;2.63e-07;3!UBERON:0003057;2.63e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;4.00e-13;6!DOID:171;3.03e-08;10 | |ontology_enrichment_disease_v019=DOID:169;4.00e-13;6!DOID:171;3.03e-08;10 | ||
|ontology_enrichment_disease_v019_2=DOID:169,3.34e-13,6;DOID:171,2.72e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.09e-30!94;UBERON:0001016!2.09e-30!94;UBERON:0001017!1.92e-27!82;UBERON:0005743!2.33e-27!86;UBERON:0001049!1.58e-25!57;UBERON:0005068!1.58e-25!57;UBERON:0006241!1.58e-25!57;UBERON:0007135!1.58e-25!57;UBERON:0002616!1.23e-20!59;UBERON:0003075!1.30e-20!86;UBERON:0007284!1.30e-20!86;UBERON:0000955!2.75e-19!69;UBERON:0006238!2.75e-19!69;UBERON:0002346!2.86e-19!90;UBERON:0002780!6.61e-19!41;UBERON:0001890!6.61e-19!41;UBERON:0006240!6.61e-19!41;UBERON:0003080!2.54e-18!42;UBERON:0004121!2.88e-18!169;UBERON:0002020!5.25e-18!34;UBERON:0003528!5.25e-18!34;UBERON:0000924!1.52e-17!173;UBERON:0006601!1.52e-17!173;UBERON:0001893!2.80e-17!34;UBERON:0001869!9.38e-17!32;UBERON:0002791!4.97e-16!33;UBERON:0003056!5.93e-16!61;UBERON:0007023!7.16e-14!115;UBERON:0000033!3.32e-13!123;UBERON:0000153!3.70e-12!129;UBERON:0007811!3.70e-12!129;UBERON:0002308!1.00e-11!9;UBERON:0000125!1.00e-11!9;UBERON:0000956!1.77e-09!25;UBERON:0000203!1.77e-09!25;UBERON:0003076!2.07e-08!15;UBERON:0003057!2.07e-08!15;UBERON:0001950!2.14e-08!20;UBERON:0000988!8.53e-08!3;UBERON:0009663!9.52e-08!7;UBERON:0002619!1.75e-07!22;UBERON:0002298!5.77e-07!8;UBERON:0000025!5.92e-07!194 | |ontology_enrichment_uberon=UBERON:0000073!2.09e-30!94;UBERON:0001016!2.09e-30!94;UBERON:0001017!1.92e-27!82;UBERON:0005743!2.33e-27!86;UBERON:0001049!1.58e-25!57;UBERON:0005068!1.58e-25!57;UBERON:0006241!1.58e-25!57;UBERON:0007135!1.58e-25!57;UBERON:0002616!1.23e-20!59;UBERON:0003075!1.30e-20!86;UBERON:0007284!1.30e-20!86;UBERON:0000955!2.75e-19!69;UBERON:0006238!2.75e-19!69;UBERON:0002346!2.86e-19!90;UBERON:0002780!6.61e-19!41;UBERON:0001890!6.61e-19!41;UBERON:0006240!6.61e-19!41;UBERON:0003080!2.54e-18!42;UBERON:0004121!2.88e-18!169;UBERON:0002020!5.25e-18!34;UBERON:0003528!5.25e-18!34;UBERON:0000924!1.52e-17!173;UBERON:0006601!1.52e-17!173;UBERON:0001893!2.80e-17!34;UBERON:0001869!9.38e-17!32;UBERON:0002791!4.97e-16!33;UBERON:0003056!5.93e-16!61;UBERON:0007023!7.16e-14!115;UBERON:0000033!3.32e-13!123;UBERON:0000153!3.70e-12!129;UBERON:0007811!3.70e-12!129;UBERON:0002308!1.00e-11!9;UBERON:0000125!1.00e-11!9;UBERON:0000956!1.77e-09!25;UBERON:0000203!1.77e-09!25;UBERON:0003076!2.07e-08!15;UBERON:0003057!2.07e-08!15;UBERON:0001950!2.14e-08!20;UBERON:0000988!8.53e-08!3;UBERON:0009663!9.52e-08!7;UBERON:0002619!1.75e-07!22;UBERON:0002298!5.77e-07!8;UBERON:0000025!5.92e-07!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.51e-15;5!UBERON:0002410;1.51e-15;5!UBERON:0002148;2.48e-10;2!UBERON:0001875;2.48e-10;2!UBERON:0006331;2.48e-10;2!UBERON:0009662;2.48e-10;2!UBERON:0006514;2.48e-10;2!UBERON:0000010;4.61e-09;8!UBERON:0000125;5.86e-09;9!UBERON:0002308;5.86e-09;9!UBERON:0001016;2.85e-08;83!UBERON:0003528;1.43e-07;34!UBERON:0002020;1.43e-07;34!UBERON:0000988;2.63e-07;3!UBERON:0002240;2.63e-07;3!UBERON:0005174;2.63e-07;3!UBERON:0001137;2.63e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000013;1.51e-15;5!UBERON:0002410;1.51e-15;5!UBERON:0002148;2.48e-10;2!UBERON:0001875;2.48e-10;2!UBERON:0006331;2.48e-10;2!UBERON:0009662;2.48e-10;2!UBERON:0006514;2.48e-10;2!UBERON:0000010;4.61e-09;8!UBERON:0000125;5.86e-09;9!UBERON:0002308;5.86e-09;9!UBERON:0001016;2.85e-08;83!UBERON:0003528;1.43e-07;34!UBERON:0002020;1.43e-07;34!UBERON:0000988;2.63e-07;3!UBERON:0002240;2.63e-07;3!UBERON:0005174;2.63e-07;3!UBERON:0001137;2.63e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.21e-15,5;UBERON:0002410,1.21e-15,5;UBERON:0001016,3.88e-12,89;UBERON:0002148,1.72e-10,2;UBERON:0006331,1.72e-10,2;UBERON:0009662,1.72e-10,2;UBERON:0001875,3.27e-10,2;UBERON:0006514,3.27e-10,2;UBERON:0000010,4.09e-09,8;UBERON:0000125,5.64e-09,9;UBERON:0002308,5.64e-09,9;UBERON:0003528,1.49e-08,34;UBERON:0002020,1.49e-08,34;UBERON:0001049,5.77e-08,56;UBERON:0005068,5.77e-08,56;UBERON:0006241,5.77e-08,56;UBERON:0007135,5.77e-08,56;UBERON:0001017,1.11e-07,81;UBERON:0000988,2.05e-07,3;UBERON:0002240,2.47e-07,3;UBERON:0005174,2.47e-07,3;UBERON:0001137,2.47e-07,3 | |||
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| ||
|short_description=p2@SLC10A4 | |short_description=p2@SLC10A4 | ||
}} | }} |
Latest revision as of 22:47, 17 September 2015
Short description: | p2@SLC10A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC10A4_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 126bp_to_ENST00000273861, NM_152679, uc003gyc.2_5end |
EntrezGene: | SLC10A4 |
HGNC: | 22980 |
UniProt: | Q96EP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.21e-15 | 5 |
autonomic nervous system | 1.21e-15 | 5 |
nervous system | 3.88e-12 | 89 |
locus ceruleus | 1.72e-10 | 2 |
brainstem nucleus | 1.72e-10 | 2 |
hindbrain nucleus | 1.72e-10 | 2 |
globus pallidus | 3.27e-10 | 2 |
pallidum | 3.27e-10 | 2 |
peripheral nervous system | 4.09e-09 | 8 |
neural nucleus | 5.64e-09 | 9 |
nucleus of brain | 5.64e-09 | 9 |
brain grey matter | 1.49e-08 | 34 |
gray matter | 1.49e-08 | 34 |
neural tube | 5.77e-08 | 56 |
neural rod | 5.77e-08 | 56 |
future spinal cord | 5.77e-08 | 56 |
neural keel | 5.77e-08 | 56 |
central nervous system | 1.11e-07 | 81 |
pons | 2.05e-07 | 3 |
spinal cord | 2.47e-07 | 3 |
dorsal region element | 2.47e-07 | 3 |
dorsum | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 3.34e-13 | 6 |
neuroectodermal tumor | 2.72e-08 | 10 |