FFCP PHASE1:Hg19::chr12:54348655..54348693,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3228 | |EntrezGene=3228 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5124 | |HGNC=5124 | ||
|TSSclassifier=strong | |||
|UniProt=P31275 | |UniProt=P31275 | ||
|association_with_transcript=-20bp_to_NM_173860,uc010soq.1_5end | |association_with_transcript=-20bp_to_NM_173860,uc010soq.1_5end | ||
|cluster_id=chr12:54348655..54348693,+ | |||
|coexpression_cluster_id=C321 | |coexpression_cluster_id=C321 | ||
|description=CAGE_peak_1_at_HOXC12_5end | |description=CAGE_peak_1_at_HOXC12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002178!5.33e-09!3;CL:0002563!1.09e-07!4;CL:0002253!2.36e-07!2;CL:0000515!4.53e-07!4 | |ontology_enrichment_celltype=CL:0002178!5.33e-09!3;CL:0002563!1.09e-07!4;CL:0002253!2.36e-07!2;CL:0000515!4.53e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002563;2.70e-15;4!CL:0002253;4.18e-14;2 | |ontology_enrichment_celltype_v019=CL:0002563;2.70e-15;4!CL:0002253;4.18e-14;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.22e-15,4;CL:0002253,3.21e-14,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:3119!1.87e-19!14;DOID:0050687!1.19e-10!143;DOID:171!1.26e-10!10;DOID:3095!2.87e-07!22;DOID:2994!2.87e-07!22 | |ontology_enrichment_disease=DOID:3119!1.87e-19!14;DOID:0050687!1.19e-10!143;DOID:171!1.26e-10!10;DOID:3095!2.87e-07!22;DOID:2994!2.87e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:171;2.42e-16;10!DOID:3119;3.53e-16;14!DOID:178;1.00e-07;1!DOID:326;1.00e-07;1!DOID:3978;1.00e-07;1!DOID:3394;1.00e-07;1!DOID:5844;1.00e-07;1!DOID:3095;2.62e-07;22!DOID:2994;2.62e-07;22 | |ontology_enrichment_disease_v019=DOID:171;2.42e-16;10!DOID:3119;3.53e-16;14!DOID:178;1.00e-07;1!DOID:326;1.00e-07;1!DOID:3978;1.00e-07;1!DOID:3394;1.00e-07;1!DOID:5844;1.00e-07;1!DOID:3095;2.62e-07;22!DOID:2994;2.62e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:171,2.16e-16,10;DOID:3119,2.92e-16,14;DOID:0050687,7.60e-10,143;DOID:162,4.57e-08,235;DOID:14566,8.20e-08,239;DOID:178,9.10e-08,1;DOID:326,9.10e-08,1;DOID:3978,9.10e-08,1;DOID:3394,9.10e-08,1;DOID:5844,9.10e-08,1;DOID:3095,2.50e-07,22;DOID:2994,2.50e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001052!1.07e-07!4;UBERON:0001242!1.09e-07!4;UBERON:0001262!1.09e-07!4;UBERON:0004786!1.09e-07!4;UBERON:0004808!1.09e-07!4;UBERON:0001277!1.09e-07!4 | |ontology_enrichment_uberon=UBERON:0001052!1.07e-07!4;UBERON:0001242!1.09e-07!4;UBERON:0001262!1.09e-07!4;UBERON:0004786!1.09e-07!4;UBERON:0004808!1.09e-07!4;UBERON:0001277!1.09e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;9.16e-16;4!UBERON:0000923;9.16e-16;4!UBERON:0010316;9.16e-16;4!UBERON:0005291;9.16e-16;4!UBERON:0001052;2.70e-15;4!UBERON:0001242;2.70e-15;4!UBERON:0001262;2.70e-15;4!UBERON:0004786;2.70e-15;4!UBERON:0004808;2.70e-15;4!UBERON:0001277;2.70e-15;4!UBERON:0002050;1.02e-12;5!UBERON:0005423;1.02e-12;5!UBERON:0004907;2.41e-12;5!UBERON:0000485;5.88e-09;7!UBERON:0003929;5.88e-09;7!UBERON:0003350;6.81e-08;8!UBERON:0005409;7.79e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0002346;9.16e-16;4!UBERON:0000923;9.16e-16;4!UBERON:0010316;9.16e-16;4!UBERON:0005291;9.16e-16;4!UBERON:0001052;2.70e-15;4!UBERON:0001242;2.70e-15;4!UBERON:0001262;2.70e-15;4!UBERON:0004786;2.70e-15;4!UBERON:0004808;2.70e-15;4!UBERON:0001277;2.70e-15;4!UBERON:0002050;1.02e-12;5!UBERON:0005423;1.02e-12;5!UBERON:0004907;2.41e-12;5!UBERON:0000485;5.88e-09;7!UBERON:0003929;5.88e-09;7!UBERON:0003350;6.81e-08;8!UBERON:0005409;7.79e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,2.12e-15,4;UBERON:0001242,2.22e-15,4;UBERON:0001262,2.22e-15,4;UBERON:0004786,2.22e-15,4;UBERON:0004808,2.22e-15,4;UBERON:0001277,2.22e-15,4;UBERON:0004907,1.99e-12,5;UBERON:0003350,6.19e-08,8;UBERON:0000485,4.23e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,2.35067065379855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07471096357784,0,0,0,1.10581869652794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.723906533337896,1.43833425785268,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02148623979056,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59624669541198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,29.9798079541751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,10.2061614684139,0,0,0,0,0,0,0,0,6.97118721393016,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97894300007517,30.2944095638928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0,0,0,0,0,0,0,0,0,0,0,9.38646637127054,0,0,0.599428828746391,1.87317542300338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59582700648688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0,0.638341257770182,0.544017803369474,2.0055191521816,0.306345576763462,0,0,0,0,0,0,0,0,0,0,1.06154382279153,0,0,0,9.99955097414693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,1.71315693154527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88719130227076,0,5.60117348848283,12.3293453658976,17.8467500532963,5.58644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.17724066444177,0.0752103283492573,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.111231401892069,0,0,3.36326595976547,0,0,0,0,0,17.7849380813232,10.0837797935496,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,2.18845852677505,0.237840181555137,0,0,0,0,0,0,0,0,0,0,1.6906229103336,0,0,0,0,0,0,0,0,0,0,71.1549745491263,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,2.35067065379855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07471096357784,0,0,0,1.10581869652794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.723906533337896,1.43833425785268,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02148623979056,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59624669541198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,29.9798079541751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,10.2061614684139,0,0,0,0,0,0,0,0,6.97118721393016,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97894300007517,30.2944095638928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0,0,0,0,0,0,0,0,0,0,0,9.38646637127054,0,0,0.599428828746391,1.87317542300338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59582700648688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0,0.638341257770182,0.544017803369474,2.0055191521816,0.306345576763462,0,0,0,0,0,0,0,0,0,0,1.06154382279153,0,0,0,9.99955097414693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,1.71315693154527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88719130227076,0,5.60117348848283,12.3293453658976,17.8467500532963,5.58644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.17724066444177,0.0752103283492573,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.111231401892069,0,0,3.36326595976547,0,0,0,0,0,17.7849380813232,10.0837797935496,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,2.18845852677505,0.237840181555137,0,0,0,0,0,0,0,0,0,0,1.6906229103336,0,0,0,0,0,0,0,0,0,0,71.1549745491263,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@HOXC12 | |short_description=p1@HOXC12 | ||
}} | }} |
Latest revision as of 04:09, 19 September 2015
Short description: | p1@HOXC12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXC12_5end |
Coexpression cluster: | C321_synovial_anaplastic_maxillary_glassy_keratoacanthoma_rhabdomyosarcoma_small |
Association with transcript: | -20bp_to_NM_173860, uc010soq.1_5end |
EntrezGene: | HOXC12 |
HGNC: | 5124 |
UniProt: | P31275 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.22e-15 | 4 |
epithelial cell of large intestine | 3.21e-14 | 2 |
Ontology term | p-value | n |
---|---|---|
rectum | 2.12e-15 | 4 |
intestinal mucosa | 2.22e-15 | 4 |
wall of intestine | 2.22e-15 | 4 |
gastrointestinal system mucosa | 2.22e-15 | 4 |
gastrointestinal system epithelium | 2.22e-15 | 4 |
intestinal epithelium | 2.22e-15 | 4 |
lower digestive tract | 1.99e-12 | 5 |
epithelium of mucosa | 6.19e-08 | 8 |
simple columnar epithelium | 4.23e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.16e-16 | 10 |
gastrointestinal system cancer | 2.92e-16 | 14 |
cell type cancer | 7.60e-10 | 143 |
cancer | 4.57e-08 | 235 |
disease of cellular proliferation | 8.20e-08 | 239 |
vascular disease | 9.10e-08 | 1 |
ischemia | 9.10e-08 | 1 |
extrinsic cardiomyopathy | 9.10e-08 | 1 |
myocardial ischemia | 9.10e-08 | 1 |
myocardial infarction | 9.10e-08 | 1 |
germ cell and embryonal cancer | 2.50e-07 | 22 |
germ cell cancer | 2.50e-07 | 22 |