FFCP PHASE1:Hg19::chr12:56350929..56350943,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:56350929..56350943,- | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_at_chr12:56350929..56350943,- | |description=CAGE_peak_at_chr12:56350929..56350943,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!6.58e-66!14;CL:0000148!1.46e-62!10;CL:0000541!1.46e-62!10;CL:0000710!1.17e-30!20;CL:0002567!1.40e-24!3;CL:0000325!1.68e-22!39;CL:0000075!2.29e-22!27;CL:0000540!1.01e-20!6;CL:0000031!1.01e-20!6;CL:0000404!1.01e-20!6;CL:0000133!2.51e-19!59;CL:0000149!2.93e-18!4;CL:0002077!4.69e-18!33;CL:0000221!9.20e-16!71;CL:0000047!1.33e-15!8;CL:0002322!3.64e-14!5;CL:0000333!1.54e-13!41;CL:0002586!3.09e-11!3;CL:0002566!2.40e-09!1;CL:0000453!8.10e-07!5 | |ontology_enrichment_celltype=CL:0000147!6.58e-66!14;CL:0000148!1.46e-62!10;CL:0000541!1.46e-62!10;CL:0000710!1.17e-30!20;CL:0002567!1.40e-24!3;CL:0000325!1.68e-22!39;CL:0000075!2.29e-22!27;CL:0000540!1.01e-20!6;CL:0000031!1.01e-20!6;CL:0000404!1.01e-20!6;CL:0000133!2.51e-19!59;CL:0000149!2.93e-18!4;CL:0002077!4.69e-18!33;CL:0000221!9.20e-16!71;CL:0000047!1.33e-15!8;CL:0002322!3.64e-14!5;CL:0000333!1.54e-13!41;CL:0002586!3.09e-11!3;CL:0002566!2.40e-09!1;CL:0000453!8.10e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000148;8.46e-88;10!CL:0000147;1.47e-81;14!CL:0002567;2.17e-54;3!CL:0000710;6.51e-44;20!CL:0000075;1.65e-32;27!CL:0002077;9.12e-23;34!CL:0002566;2.47e-19;1!CL:0000149;4.49e-19;4!CL:0002586;3.06e-07;3 | |ontology_enrichment_celltype_v019=CL:0000148;8.46e-88;10!CL:0000147;1.47e-81;14!CL:0002567;2.17e-54;3!CL:0000710;6.51e-44;20!CL:0000075;1.65e-32;27!CL:0002077;9.12e-23;34!CL:0002566;2.47e-19;1!CL:0000149;4.49e-19;4!CL:0002586;3.06e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,6.98e-88,10;CL:0000541,6.98e-88,10;CL:0000147,1.19e-81,14;CL:0002567,1.81e-54,3;CL:0000710,5.92e-44,20;CL:0000075,1.54e-32,27;CL:0002077,8.21e-26,34;CL:0000333,2.27e-20,41;CL:0002566,2.25e-19,1;CL:0000149,4.29e-19,4;CL:0000133,1.55e-18,59;CL:0000221,3.29e-15,72;CL:0002586,2.97e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000133;4.09e-10;59!CL:0000221;2.86e-07;72 | |ontology_enrichment_development_v019=CL:0000133;4.09e-10;59!CL:0000221;2.86e-07;72 | ||
|ontology_enrichment_disease=DOID:1909!7.90e-17!2 | |ontology_enrichment_disease=DOID:1909!7.90e-17!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.08e-36;2 | |ontology_enrichment_disease_v019=DOID:1909;1.08e-36;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.42e-36,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.67e-14!5;UBERON:0005388!1.67e-14!5;UBERON:0001802!1.67e-14!5;UBERON:0001781!3.09e-11!3;UBERON:0001782!3.09e-11!3;UBERON:0005424!3.09e-11!3 | |ontology_enrichment_uberon=UBERON:0000966!1.67e-14!5;UBERON:0005388!1.67e-14!5;UBERON:0001802!1.67e-14!5;UBERON:0001781!3.09e-11!3;UBERON:0001782!3.09e-11!3;UBERON:0005424!3.09e-11!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;3.06e-07;3!UBERON:0001782;3.06e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001781;3.06e-07;3!UBERON:0001782;3.06e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.97e-07,3;UBERON:0005424,2.97e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.348581828608555,0.414644220061482,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79390734885544,2.67391897890794,11.7217447210047,1.71072446022705,7.81488944545259,21.3243571069181,9.1464458441785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,1.62689197332152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0.275078873194468,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21319294033318,5.42384133735438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.348581828608555,0.414644220061482,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79390734885544,2.67391897890794,11.7217447210047,1.71072446022705,7.81488944545259,21.3243571069181,9.1464458441785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,1.62689197332152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0.275078873194468,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21319294033318,5.42384133735438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:56350929..56350943,- | |short_description=p@chr12:56350929..56350943,- | ||
}} | }} |
Latest revision as of 10:16, 24 July 2015
Short description: | p@chr12:56350929..56350943, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:56350929..56350943, - |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 6.98e-88 | 10 |
melanoblast | 6.98e-88 | 10 |
pigment cell | 1.19e-81 | 14 |
light melanocyte | 1.81e-54 | 3 |
neurecto-epithelial cell | 5.92e-44 | 20 |
columnar/cuboidal epithelial cell | 1.54e-32 | 27 |
ecto-epithelial cell | 8.21e-26 | 34 |
migratory neural crest cell | 2.27e-20 | 41 |
dark melanocyte | 2.25e-19 | 1 |
visual pigment cell | 4.29e-19 | 4 |
neurectodermal cell | 1.55e-18 | 59 |
ectodermal cell | 3.29e-15 | 72 |
retinal pigment epithelial cell | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.97e-07 | 3 |
presumptive retinal pigmented epithelium | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.42e-36 | 2 |