FFCP PHASE1:Hg19::chr15:55562656..55562664,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5873 | |EntrezGene=5873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9766 | |HGNC=9766 | ||
|TSSclassifier=strong | |||
|UniProt=P51159,A2RU94 | |UniProt=P51159,A2RU94 | ||
|association_with_transcript=-64bp_to_ENST00000396307,NM_004580_5end | |association_with_transcript=-64bp_to_ENST00000396307,NM_004580_5end | ||
|cluster_id=chr15:55562656..55562664,- | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_14_at_RAB27A_5end | |description=CAGE_peak_14_at_RAB27A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!1.67e-41!14;CL:0000148!3.63e-33!10;CL:0000541!3.63e-33!10;CL:0000149!1.16e-21!4;CL:0000710!2.12e-16!20;CL:0000325!2.72e-14!39;CL:0002586!2.32e-13!3;CL:0002567!2.79e-13!3;CL:0000075!4.90e-12!27;CL:0002566!8.14e-11!1;CL:0002077!9.20e-10!33;CL:0000333!2.23e-07!41 | |ontology_enrichment_celltype=CL:0000147!1.67e-41!14;CL:0000148!3.63e-33!10;CL:0000541!3.63e-33!10;CL:0000149!1.16e-21!4;CL:0000710!2.12e-16!20;CL:0000325!2.72e-14!39;CL:0002586!2.32e-13!3;CL:0002567!2.79e-13!3;CL:0000075!4.90e-12!27;CL:0002566!8.14e-11!1;CL:0002077!9.20e-10!33;CL:0000333!2.23e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000147;2.84e-76;14!CL:0000148;4.81e-55;10!CL:0000149;7.21e-50;4!CL:0002586;5.61e-30;3!CL:0000710;9.66e-28;20!CL:0002566;1.87e-23;1!CL:0000075;1.23e-20;27!CL:0002077;6.32e-15;34!CL:0002567;1.30e-08;3 | |ontology_enrichment_celltype_v019=CL:0000147;2.84e-76;14!CL:0000148;4.81e-55;10!CL:0000149;7.21e-50;4!CL:0002586;5.61e-30;3!CL:0000710;9.66e-28;20!CL:0002566;1.87e-23;1!CL:0000075;1.23e-20;27!CL:0002077;6.32e-15;34!CL:0002567;1.30e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.69e-76,14;CL:0000148,4.55e-55,10;CL:0000541,4.55e-55,10;CL:0000149,7.22e-50,4;CL:0002586,5.61e-30,3;CL:0000710,9.40e-28,20;CL:0002566,1.67e-23,1;CL:0000075,1.20e-20,27;CL:0002077,1.88e-16,34;CL:0000333,4.67e-13,41;CL:0000133,2.98e-09,59;CL:0002567,1.21e-08,3;CL:0000221,1.20e-07,72 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1909!1.13e-19!2 | |ontology_enrichment_disease=DOID:1909!1.13e-19!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.09e-44;2 | |ontology_enrichment_disease_v019=DOID:1909;1.09e-44;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.22e-44,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!3.07e-17!5;UBERON:0005388!3.07e-17!5;UBERON:0001802!3.07e-17!5;UBERON:0001781!2.32e-13!3;UBERON:0001782!2.32e-13!3;UBERON:0005424!2.32e-13!3;UBERON:0001896!1.27e-12!3;UBERON:0005290!1.27e-12!3;UBERON:0010096!1.27e-12!3;UBERON:0002298!1.89e-10!8;UBERON:0003112!3.29e-10!1;UBERON:0000032!3.29e-10!1;UBERON:0005253!3.29e-10!1;UBERON:0003128!3.29e-10!1;UBERON:0002241!3.29e-10!1;UBERON:0001703!3.29e-10!1;UBERON:0004761!3.29e-10!1;UBERON:0009617!3.29e-10!1;UBERON:0003076!1.23e-09!15;UBERON:0003057!1.23e-09!15;UBERON:0000970!1.47e-07!20;UBERON:0002104!3.33e-07!21;UBERON:0004733!3.90e-07!12;UBERON:0002028!3.90e-07!12;UBERON:0007277!3.90e-07!12 | |ontology_enrichment_uberon=UBERON:0000966!3.07e-17!5;UBERON:0005388!3.07e-17!5;UBERON:0001802!3.07e-17!5;UBERON:0001781!2.32e-13!3;UBERON:0001782!2.32e-13!3;UBERON:0005424!2.32e-13!3;UBERON:0001896!1.27e-12!3;UBERON:0005290!1.27e-12!3;UBERON:0010096!1.27e-12!3;UBERON:0002298!1.89e-10!8;UBERON:0003112!3.29e-10!1;UBERON:0000032!3.29e-10!1;UBERON:0005253!3.29e-10!1;UBERON:0003128!3.29e-10!1;UBERON:0002241!3.29e-10!1;UBERON:0001703!3.29e-10!1;UBERON:0004761!3.29e-10!1;UBERON:0009617!3.29e-10!1;UBERON:0003076!1.23e-09!15;UBERON:0003057!1.23e-09!15;UBERON:0000970!1.47e-07!20;UBERON:0002104!3.33e-07!21;UBERON:0004733!3.90e-07!12;UBERON:0002028!3.90e-07!12;UBERON:0007277!3.90e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;5.61e-30;3!UBERON:0001782;5.61e-30;3!UBERON:0000966;1.93e-18;5!UBERON:0005388;1.93e-18;5!UBERON:0001802;1.93e-18;5!UBERON:0010371;3.91e-11;31!UBERON:0007625;6.35e-09;11!UBERON:0001003;7.98e-07;15!UBERON:0007376;7.98e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0001781;5.61e-30;3!UBERON:0001782;5.61e-30;3!UBERON:0000966;1.93e-18;5!UBERON:0005388;1.93e-18;5!UBERON:0001802;1.93e-18;5!UBERON:0010371;3.91e-11;31!UBERON:0007625;6.35e-09;11!UBERON:0001003;7.98e-07;15!UBERON:0007376;7.98e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,5.61e-30,3;UBERON:0005424,5.61e-30,3;UBERON:0001781,8.96e-23,4;UBERON:0000966,1.52e-15,6;UBERON:0005388,1.52e-15,6;UBERON:0001802,1.52e-15,6;UBERON:0007625,6.35e-09,11;UBERON:0001003,8.09e-07,15;UBERON:0007376,8.09e-07,15;UBERON:0007383,8.09e-07,15 | |||
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|short_description=p14@RAB27A | |short_description=p14@RAB27A | ||
}} | }} |
Latest revision as of 04:06, 18 September 2015
Short description: | p14@RAB27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_RAB27A_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -64bp_to_ENST00000396307, NM_004580_5end |
EntrezGene: | RAB27A |
HGNC: | 9766 |
UniProt: | P51159A2RU94 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.69e-76 | 14 |
melanocyte | 4.55e-55 | 10 |
melanoblast | 4.55e-55 | 10 |
visual pigment cell | 7.22e-50 | 4 |
retinal pigment epithelial cell | 5.61e-30 | 3 |
neurecto-epithelial cell | 9.40e-28 | 20 |
dark melanocyte | 1.67e-23 | 1 |
columnar/cuboidal epithelial cell | 1.20e-20 | 27 |
ecto-epithelial cell | 1.88e-16 | 34 |
migratory neural crest cell | 4.67e-13 | 41 |
neurectodermal cell | 2.98e-09 | 59 |
light melanocyte | 1.21e-08 | 3 |
ectodermal cell | 1.20e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 5.61e-30 | 3 |
presumptive retinal pigmented epithelium | 5.61e-30 | 3 |
layer of retina | 8.96e-23 | 4 |
retina | 1.52e-15 | 6 |
photoreceptor array | 1.52e-15 | 6 |
posterior segment of eyeball | 1.52e-15 | 6 |
pigment epithelium of eye | 6.35e-09 | 11 |
skin epidermis | 8.09e-07 | 15 |
outer epithelium | 8.09e-07 | 15 |
enveloping layer of ectoderm | 8.09e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.22e-44 | 2 |