FFCP PHASE1:Hg19::chr1:34630820..34630844,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:34630820..34630844,-
|short_description=p1@CSMD2
|description=CAGE_peak_1_at_CSMD2_5end
|association_with_transcript=30bp_to_ENST00000373381,uc001bxm.1_5en...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=114784 | |EntrezGene=114784 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19290 | |HGNC=19290 | ||
|TSSclassifier=strong | |||
|UniProt=E7EUA6,Q53TY4 | |UniProt=E7EUA6,Q53TY4 | ||
|association_with_transcript=30bp_to_ENST00000373381,uc001bxm.1_5end | |||
|cluster_id=chr1:34630820..34630844,- | |||
|coexpression_cluster_id=C1856 | |||
|description=CAGE_peak_1_at_CSMD2_5end | |||
|id=chr1:34630820..34630844,- | |||
|ontology_enrichment_celltype=CL:0000055!7.04e-23!180;CL:0000057!1.89e-11!75;CL:0000393!1.12e-10!60;CL:0000211!1.12e-10!60;CL:0002620!4.69e-10!23;CL:0000359!6.42e-09!32;CL:0000680!3.02e-08!57;CL:0000056!3.02e-08!57;CL:0000355!3.02e-08!57;CL:0000187!4.86e-08!54;CL:0000192!6.01e-08!42;CL:0000514!6.01e-08!42;CL:0000183!2.13e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.81e-11;23!CL:0000359;1.05e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,3.71e-11,23;CL:0000057,6.40e-11,76;CL:0000359,4.20e-09,32;CL:0000393,3.56e-08,61;CL:0000211,3.56e-08,61;CL:0000047,3.24e-07,8;CL:0000133,3.91e-07,59;CL:0000192,6.71e-07,43;CL:0000514,6.71e-07,43 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.50e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.19e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.64e-07,14 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001869;1.54e-23;32!UBERON:0003528;1.69e-23;34!UBERON:0002020;1.69e-23;34!UBERON:0001893;2.05e-23;34!UBERON:0002791;2.47e-23;32!UBERON:0002780;8.67e-21;41!UBERON:0001890;8.67e-21;41!UBERON:0000956;1.70e-20;25!UBERON:0000203;1.70e-20;25!UBERON:0000073;3.30e-20;53!UBERON:0002616;3.30e-20;53!UBERON:0002619;5.52e-19;22!UBERON:0001950;2.17e-17;20!UBERON:0000955;5.55e-14;68!UBERON:0001017;8.79e-14;75!UBERON:0001016;3.34e-13;83!UBERON:0004732;4.60e-09;13!UBERON:0002199;6.90e-09;46!UBERON:0002416;6.90e-09;46!UBERON:0002097;1.87e-08;41!UBERON:0004733;2.09e-08;12!UBERON:0002028;2.09e-08;12!UBERON:0000125;3.27e-08;9!UBERON:0002308;3.27e-08;9!UBERON:0002420;4.62e-08;9!UBERON:0007245;4.62e-08;9!UBERON:0010009;4.62e-08;9!UBERON:0010011;4.62e-08;9!UBERON:0000454;4.62e-08;9!UBERON:0003102;2.91e-07;50!UBERON:0010314;6.39e-07;132 | |||
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| ||
|short_description=p1@CSMD2 | |||
}} | }} |
Latest revision as of 17:38, 17 September 2015
Short description: | p1@CSMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CSMD2_5end |
Coexpression cluster: | C1856_brain_parietal_temporal_occipital_duodenum_Fibroblast_neuroectodermal |
Association with transcript: | 30bp_to_ENST00000373381, uc001bxm.1_5end |
EntrezGene: | CSMD2 |
HGNC: | 19290 |
UniProt: | E7EUA6Q53TY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 3.71e-11 | 23 |
fibroblast | 6.40e-11 | 76 |
vascular associated smooth muscle cell | 4.20e-09 | 32 |
electrically responsive cell | 3.56e-08 | 61 |
electrically active cell | 3.56e-08 | 61 |
neuronal stem cell | 3.24e-07 | 8 |
neurectodermal cell | 3.91e-07 | 59 |
smooth muscle cell | 6.71e-07 | 43 |
smooth muscle myoblast | 6.71e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.64e-07 | 14 |