FFCP PHASE1:Hg19::chr1:32860020..32860050,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55108 | |EntrezGene=55108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25501 | |HGNC=25501 | ||
|TSSclassifier=strong | |||
|UniProt=F8W6C6,B4DM89,Q9NW68,C9JB13,E9PQA7,E9PNA9,E9PS77 | |UniProt=F8W6C6,B4DM89,Q9NW68,C9JB13,E9PQA7,E9PNA9,E9PS77 | ||
|association_with_transcript=0bp_to_ENST00000325745,ENST00000341071,ENST00000373520,ENST00000413080,ENST00000419121,ENST00000444377,ENST00000446293,ENST00000449308,ENST00000455895,ENST00000526031,ENST00000527163,ENST00000527513,ENST00000530485,ENST00000530753,ENST00000530876,ENST00000531222,ENST00000533084_5end | |association_with_transcript=0bp_to_ENST00000325745,ENST00000341071,ENST00000373520,ENST00000413080,ENST00000419121,ENST00000444377,ENST00000446293,ENST00000449308,ENST00000455895,ENST00000526031,ENST00000527163,ENST00000527513,ENST00000530485,ENST00000530753,ENST00000530876,ENST00000531222,ENST00000533084_5end | ||
|cluster_id=chr1:32860020..32860050,- | |||
|description=CAGE_peak_1_at_BSDC1_5end | |description=CAGE_peak_1_at_BSDC1_5end | ||
|id=chr1:32860020..32860050,- | |id=chr1:32860020..32860050,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.51e-21!115;UBERON:0001049!8.36e-16!57;UBERON:0005068!8.36e-16!57;UBERON:0006241!8.36e-16!57;UBERON:0007135!8.36e-16!57;UBERON:0002616!2.61e-14!59;UBERON:0003075!8.51e-13!86;UBERON:0007284!8.51e-13!86;UBERON:0000955!9.63e-13!69;UBERON:0006238!9.63e-13!69;UBERON:0001017!3.99e-12!82;UBERON:0002780!6.78e-12!41;UBERON:0001890!6.78e-12!41;UBERON:0006240!6.78e-12!41;UBERON:0005743!7.37e-12!86;UBERON:0002346!1.88e-11!90;UBERON:0003080!3.11e-11!42;UBERON:0000025!4.59e-11!194;UBERON:0000073!2.61e-10!94;UBERON:0001016!2.61e-10!94;UBERON:0001893!6.96e-10!34;UBERON:0004111!7.62e-10!241;UBERON:0003056!1.89e-09!61;UBERON:0002791!2.11e-09!33;UBERON:0002020!2.43e-09!34;UBERON:0003528!2.43e-09!34;UBERON:0001869!5.13e-09!32;UBERON:0000033!2.71e-08!123;UBERON:0000153!5.17e-08!129;UBERON:0007811!5.17e-08!129;UBERON:0002619!2.07e-07!22;UBERON:0000956!9.91e-07!25;UBERON:0000203!9.91e-07!25 | |ontology_enrichment_uberon=UBERON:0007023!1.51e-21!115;UBERON:0001049!8.36e-16!57;UBERON:0005068!8.36e-16!57;UBERON:0006241!8.36e-16!57;UBERON:0007135!8.36e-16!57;UBERON:0002616!2.61e-14!59;UBERON:0003075!8.51e-13!86;UBERON:0007284!8.51e-13!86;UBERON:0000955!9.63e-13!69;UBERON:0006238!9.63e-13!69;UBERON:0001017!3.99e-12!82;UBERON:0002780!6.78e-12!41;UBERON:0001890!6.78e-12!41;UBERON:0006240!6.78e-12!41;UBERON:0005743!7.37e-12!86;UBERON:0002346!1.88e-11!90;UBERON:0003080!3.11e-11!42;UBERON:0000025!4.59e-11!194;UBERON:0000073!2.61e-10!94;UBERON:0001016!2.61e-10!94;UBERON:0001893!6.96e-10!34;UBERON:0004111!7.62e-10!241;UBERON:0003056!1.89e-09!61;UBERON:0002791!2.11e-09!33;UBERON:0002020!2.43e-09!34;UBERON:0003528!2.43e-09!34;UBERON:0001869!5.13e-09!32;UBERON:0000033!2.71e-08!123;UBERON:0000153!5.17e-08!129;UBERON:0007811!5.17e-08!129;UBERON:0002619!2.07e-07!22;UBERON:0000956!9.91e-07!25;UBERON:0000203!9.91e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.52e-10;53!UBERON:0002616;3.52e-10;53!UBERON:0002780;9.16e-09;41!UBERON:0001890;9.16e-09;41!UBERON:0001893;9.91e-09;34!UBERON:0003528;3.93e-08;34!UBERON:0002020;3.93e-08;34!UBERON:0001869;5.24e-08;32!UBERON:0002791;6.39e-08;32!UBERON:0002619;2.13e-07;22!UBERON:0000956;9.53e-07;25!UBERON:0000203;9.53e-07;25!UBERON:0001017;9.66e-07;75 | |ontology_enrichment_uberon_v019=UBERON:0000073;3.52e-10;53!UBERON:0002616;3.52e-10;53!UBERON:0002780;9.16e-09;41!UBERON:0001890;9.16e-09;41!UBERON:0001893;9.91e-09;34!UBERON:0003528;3.93e-08;34!UBERON:0002020;3.93e-08;34!UBERON:0001869;5.24e-08;32!UBERON:0002791;6.39e-08;32!UBERON:0002619;2.13e-07;22!UBERON:0000956;9.53e-07;25!UBERON:0000203;9.53e-07;25!UBERON:0001017;9.66e-07;75 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.82e-21,114;UBERON:0001049,1.69e-16,56;UBERON:0005068,1.69e-16,56;UBERON:0006241,1.69e-16,56;UBERON:0007135,1.69e-16,56;UBERON:0000073,3.38e-16,53;UBERON:0002616,3.38e-16,53;UBERON:0003075,1.35e-13,82;UBERON:0007284,1.35e-13,82;UBERON:0000955,2.92e-13,68;UBERON:0006238,2.92e-13,68;UBERON:0001017,1.42e-12,81;UBERON:0002346,3.81e-12,86;UBERON:0002780,6.78e-12,41;UBERON:0001890,6.78e-12,41;UBERON:0003080,6.78e-12,41;UBERON:0006240,6.78e-12,41;UBERON:0000025,2.82e-11,192;UBERON:0001016,7.13e-11,89;UBERON:0003056,2.41e-10,61;UBERON:0010371,3.98e-10,104;UBERON:0001893,6.96e-10,34;UBERON:0004111,8.66e-10,240;UBERON:0003528,2.43e-09,34;UBERON:0002020,2.43e-09,34;UBERON:0001869,5.13e-09,32;UBERON:0002791,6.76e-09,32;UBERON:0002619,2.07e-07,22;UBERON:0010314,5.89e-07,132;UBERON:0000956,9.91e-07,25;UBERON:0000203,9.91e-07,25 | |||
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|short_description=p1@BSDC1 | |short_description=p1@BSDC1 | ||
}} | }} |
Latest revision as of 15:25, 17 September 2015
Short description: | p1@BSDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BSDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000325745, ENST00000341071, ENST00000373520, ENST00000413080, ENST00000419121, ENST00000444377, ENST00000446293, ENST00000449308, ENST00000455895, ENST00000526031, ENST00000527163, ENST00000527513, ENST00000530485, ENST00000530753, ENST00000530876, ENST00000531222, ENST00000533084_5end |
EntrezGene: | BSDC1 |
HGNC: | 25501 |
UniProt: | F8W6C6B4DM89Q9NW68C9JB13E9PQA7E9PNA9E9PS77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.82e-21 | 114 |
neural tube | 1.69e-16 | 56 |
neural rod | 1.69e-16 | 56 |
future spinal cord | 1.69e-16 | 56 |
neural keel | 1.69e-16 | 56 |
regional part of nervous system | 3.38e-16 | 53 |
regional part of brain | 3.38e-16 | 53 |
neural plate | 1.35e-13 | 82 |
presumptive neural plate | 1.35e-13 | 82 |
brain | 2.92e-13 | 68 |
future brain | 2.92e-13 | 68 |
central nervous system | 1.42e-12 | 81 |
neurectoderm | 3.81e-12 | 86 |
regional part of forebrain | 6.78e-12 | 41 |
forebrain | 6.78e-12 | 41 |
anterior neural tube | 6.78e-12 | 41 |
future forebrain | 6.78e-12 | 41 |
tube | 2.82e-11 | 192 |
nervous system | 7.13e-11 | 89 |
pre-chordal neural plate | 2.41e-10 | 61 |
ecto-epithelium | 3.98e-10 | 104 |
telencephalon | 6.96e-10 | 34 |
anatomical conduit | 8.66e-10 | 240 |
brain grey matter | 2.43e-09 | 34 |
gray matter | 2.43e-09 | 34 |
cerebral hemisphere | 5.13e-09 | 32 |
regional part of telencephalon | 6.76e-09 | 32 |
regional part of cerebral cortex | 2.07e-07 | 22 |
structure with developmental contribution from neural crest | 5.89e-07 | 132 |
cerebral cortex | 9.91e-07 | 25 |
pallium | 9.91e-07 | 25 |