FFCP PHASE1:Hg19::chr1:161059868..161059875,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81607 | |EntrezGene=81607 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19688 | |HGNC=19688 | ||
|TSSclassifier=strong | |||
|UniProt=Q96NY8 | |UniProt=Q96NY8 | ||
|association_with_transcript=-479bp_to_ENST00000368012_5end | |association_with_transcript=-479bp_to_ENST00000368012_5end | ||
|cluster_id=chr1:161059868..161059875,- | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_8_at_PVRL4_5end | |description=CAGE_peak_8_at_PVRL4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002541!2.07e-25!3;CL:0000039!1.06e-23!7;CL:0000586!1.06e-23!7 | |ontology_enrichment_celltype=CL:0002541!2.07e-25!3;CL:0000039!1.06e-23!7;CL:0000586!1.06e-23!7 | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.83e-66;3!CL:0000349;3.20e-24;19!CL:0002537;3.42e-11;5!CL:0000134;1.27e-08;55!CL:0000039;2.03e-08;7!CL:0000586;2.03e-08;7!CL:0000723;8.08e-07;61 | |ontology_enrichment_celltype_v019=CL:0002541;2.83e-66;3!CL:0000349;3.20e-24;19!CL:0002537;3.42e-11;5!CL:0000134;1.27e-08;55!CL:0000039;2.03e-08;7!CL:0000586;2.03e-08;7!CL:0000723;8.08e-07;61 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.40e-66,3;CL:0000349,3.20e-24,19;CL:0002537,3.60e-11,5;CL:0000039,2.03e-08,7;CL:0000586,2.03e-08,7 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1799!1.88e-19!1;DOID:10165!1.88e-19!1;DOID:1798!1.88e-19!1;DOID:3095!5.52e-08!22;DOID:2994!5.52e-08!22 | |ontology_enrichment_disease=DOID:1799!1.88e-19!1;DOID:10165!1.88e-19!1;DOID:1798!1.88e-19!1;DOID:3095!5.52e-08!22;DOID:2994!5.52e-08!22 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!2.07e-25!3;UBERON:0000920!2.07e-25!3;UBERON:0003124!4.84e-24!7;UBERON:0005631!3.74e-21!14;UBERON:0000158!3.74e-21!14;UBERON:0002372!5.62e-19!1;UBERON:0001961!5.62e-19!1;UBERON:0001744!5.62e-19!1;UBERON:0001735!5.62e-19!1;UBERON:0000478!1.66e-12!24;UBERON:0004923!5.03e-08!57 | |ontology_enrichment_uberon=UBERON:0000476!2.07e-25!3;UBERON:0000920!2.07e-25!3;UBERON:0003124!4.84e-24!7;UBERON:0005631!3.74e-21!14;UBERON:0000158!3.74e-21!14;UBERON:0002372!5.62e-19!1;UBERON:0001961!5.62e-19!1;UBERON:0001744!5.62e-19!1;UBERON:0001735!5.62e-19!1;UBERON:0000478!1.66e-12!24;UBERON:0004923!5.03e-08!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;2.83e-66;3!UBERON:0000920;2.83e-66;3!UBERON:0005631;5.64e-45;10!UBERON:0000158;5.64e-45;10!UBERON:0000478;2.13e-19;24!UBERON:0000305;2.26e-08;7 | |ontology_enrichment_uberon_v019=UBERON:0003124;2.83e-66;3!UBERON:0000920;2.83e-66;3!UBERON:0005631;5.64e-45;10!UBERON:0000158;5.64e-45;10!UBERON:0000478;2.13e-19;24!UBERON:0000305;2.26e-08;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.40e-66,3;UBERON:0005631,1.81e-32,14;UBERON:0000158,1.81e-32,14;UBERON:0003124,3.16e-29,7;UBERON:0000478,2.13e-19,24;UBERON:0000305,2.35e-08,7;UBERON:0004923,1.24e-07,66;UBERON:0004871,1.80e-07,8 | |||
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|short_description=p8@PVRL4 | |short_description=p8@PVRL4 | ||
}} | }} |
Latest revision as of 04:38, 18 September 2015
Short description: | p8@PVRL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PVRL4_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -479bp_to_ENST00000368012_5end |
EntrezGene: | PVRL4 |
HGNC: | 19688 |
UniProt: | Q96NY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.40e-66 | 3 |
extraembryonic cell | 3.20e-24 | 19 |
amnion mesenchymal stem cell | 3.60e-11 | 5 |
germ line cell | 2.03e-08 | 7 |
germ cell | 2.03e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.40e-66 | 3 |
extraembryonic membrane | 1.81e-32 | 14 |
membranous layer | 1.81e-32 | 14 |
chorion | 3.16e-29 | 7 |
extraembryonic structure | 2.13e-19 | 24 |
amnion | 2.35e-08 | 7 |
organ component layer | 1.24e-07 | 66 |
somatic layer of lateral plate mesoderm | 1.80e-07 | 8 |