FFCP PHASE1:Hg19::chr22:45681842..45681853,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7380 | |EntrezGene=7380 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12580 | |HGNC=12580 | ||
|TSSclassifier=strong | |||
|UniProt=O75631 | |UniProt=O75631 | ||
|association_with_transcript=-12bp_to_AB010116_5end | |association_with_transcript=-12bp_to_AB010116_5end | ||
|cluster_id=chr22:45681842..45681853,+ | |||
|description=CAGE_peak_3_at_UPK3A_5end | |description=CAGE_peak_3_at_UPK3A_5end | ||
|id=chr22:45681842..45681853,+ | |id=chr22:45681842..45681853,+ | ||
|ontology_enrichment_celltype=CL:0002393!1.72e-34!9;CL:0002397!1.72e-34!9;CL:0002057!1.05e-26!42;CL:0000860!9.75e-25!45;CL:0000875!1.54e-20!3;CL:0002396!1.54e-20!3;CL:0000766!1.05e-17!76;CL:0002194!1.46e-16!63;CL:0000576!1.46e-16!63;CL:0000040!1.46e-16!63;CL:0000559!1.46e-16!63;CL:0002009!5.65e-16!65;CL:0000839!1.19e-14!70;CL:0000557!2.07e-14!71;CL:0000763!2.24e-14!112;CL:0000049!2.24e-14!112;CL:0000738!3.17e-12!140;CL:0000037!1.88e-10!172;CL:0000566!1.88e-10!172;CL:0002087!3.62e-10!119;CL:0000988!1.17e-09!182;CL:0000767!2.64e-09!3;CL:0000842!3.84e-09!3;CL:0002032!1.28e-08!165;CL:0000837!1.28e-08!165;CL:0002031!3.84e-07!124;CL:0000224!4.61e-07!4;CL:0002563!6.46e-07!4 | |ontology_enrichment_celltype=CL:0002393!1.72e-34!9;CL:0002397!1.72e-34!9;CL:0002057!1.05e-26!42;CL:0000860!9.75e-25!45;CL:0000875!1.54e-20!3;CL:0002396!1.54e-20!3;CL:0000766!1.05e-17!76;CL:0002194!1.46e-16!63;CL:0000576!1.46e-16!63;CL:0000040!1.46e-16!63;CL:0000559!1.46e-16!63;CL:0002009!5.65e-16!65;CL:0000839!1.19e-14!70;CL:0000557!2.07e-14!71;CL:0000763!2.24e-14!112;CL:0000049!2.24e-14!112;CL:0000738!3.17e-12!140;CL:0000037!1.88e-10!172;CL:0000566!1.88e-10!172;CL:0002087!3.62e-10!119;CL:0000988!1.17e-09!182;CL:0000767!2.64e-09!3;CL:0000842!3.84e-09!3;CL:0002032!1.28e-08!165;CL:0000837!1.28e-08!165;CL:0002031!3.84e-07!124;CL:0000224!4.61e-07!4;CL:0002563!6.46e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000875;9.21e-39;3!CL:0002396;9.21e-39;3!CL:0000182;6.10e-22;12 | |ontology_enrichment_celltype_v019=CL:0000875;9.21e-39;3!CL:0002396;9.21e-39;3!CL:0000182;6.10e-22;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000875,1.23e-38,3;CL:0002396,1.23e-38,3;CL:0002393,6.82e-29,9;CL:0002397,6.82e-29,9;CL:0000182,5.48e-22,12;CL:0000860,9.24e-07,42;CL:0002057,9.24e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.43e-24;11!UBERON:0009497;2.55e-20;13!UBERON:0001041;3.14e-09;30!UBERON:0003104;8.89e-09;31 | |ontology_enrichment_development_v019=UBERON:0004161;7.43e-24;11!UBERON:0009497;2.55e-20;13!UBERON:0001041;3.14e-09;30!UBERON:0003104;8.89e-09;31 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:7;1.33e-07;39 | |ontology_enrichment_disease_v019=DOID:7;1.33e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:7,2.91e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.94e-16!102;UBERON:0003061!3.94e-16!102;UBERON:0002193!2.24e-14!112;UBERON:0002405!4.78e-14!115;UBERON:0002371!1.69e-12!80;UBERON:0001474!1.91e-11!86;UBERON:0004765!2.33e-09!101;UBERON:0001434!2.33e-09!101;UBERON:0001242!6.46e-07!4;UBERON:0001262!6.46e-07!4;UBERON:0004786!6.46e-07!4;UBERON:0004808!6.46e-07!4;UBERON:0001277!6.46e-07!4;UBERON:0000178!7.33e-07!15;UBERON:0000179!7.33e-07!15;UBERON:0000463!7.33e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!3.94e-16!102;UBERON:0003061!3.94e-16!102;UBERON:0002193!2.24e-14!112;UBERON:0002405!4.78e-14!115;UBERON:0002371!1.69e-12!80;UBERON:0001474!1.91e-11!86;UBERON:0004765!2.33e-09!101;UBERON:0001434!2.33e-09!101;UBERON:0001242!6.46e-07!4;UBERON:0001262!6.46e-07!4;UBERON:0004786!6.46e-07!4;UBERON:0004808!6.46e-07!4;UBERON:0001277!6.46e-07!4;UBERON:0000178!7.33e-07!15;UBERON:0000179!7.33e-07!15;UBERON:0000463!7.33e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.70e-14;19!UBERON:0006925;3.70e-14;19!UBERON:0002423;6.15e-11;25!UBERON:0002365;2.52e-08;31!UBERON:0002330;2.52e-08;31!UBERON:0002368;7.14e-08;33 | |ontology_enrichment_uberon_v019=UBERON:0002107;3.70e-14;19!UBERON:0006925;3.70e-14;19!UBERON:0002423;6.15e-11;25!UBERON:0002365;2.52e-08;31!UBERON:0002330;2.52e-08;31!UBERON:0002368;7.14e-08;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.46e-14,19;UBERON:0006925,3.46e-14,19;UBERON:0008836,3.46e-14,19;UBERON:0008835,2.35e-12,22;UBERON:0003894,2.35e-12,22;UBERON:0009854,7.52e-12,23;UBERON:0007499,5.84e-11,25;UBERON:0009497,5.84e-11,25;UBERON:0000015,5.84e-11,25;UBERON:0002423,5.84e-11,25;UBERON:0006235,5.84e-11,25;UBERON:0004161,5.84e-11,25;UBERON:0009856,1.45e-10,26;UBERON:0002365,5.69e-09,31;UBERON:0002330,5.69e-09,31;UBERON:0002368,5.08e-08,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0.633765858935825,0.850417199860174,1.67726916406701,0.786300418025466,0,0,2.28010194992999,0.99458338599545,3.28795476776341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59984501613838,2.63730746819733,2.6961417541674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0.633765858935825,0.850417199860174,1.67726916406701,0.786300418025466,0,0,2.28010194992999,0.99458338599545,3.28795476776341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59984501613838,2.63730746819733,2.6961417541674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@UPK3A | |short_description=p3@UPK3A | ||
}} | }} |
Latest revision as of 03:48, 25 September 2015
Short description: | p3@UPK3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_UPK3A_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_AB010116_5end |
EntrezGene: | UPK3A |
HGNC: | 12580 |
UniProt: | O75631 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
non-classical monocyte | 1.23e-38 | 3 |
CD14-low, CD16-positive monocyte | 1.23e-38 | 3 |
intermediate monocyte | 6.82e-29 | 9 |
CD14-positive, CD16-positive monocyte | 6.82e-29 | 9 |
hepatocyte | 5.48e-22 | 12 |
classical monocyte | 9.24e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.24e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
liver | 3.46e-14 | 19 |
digestive gland | 3.46e-14 | 19 |
liver bud | 3.46e-14 | 19 |
hepatic diverticulum | 2.35e-12 | 22 |
liver primordium | 2.35e-12 | 22 |
digestive tract diverticulum | 7.52e-12 | 23 |
epithelial sac | 5.84e-11 | 25 |
epithelium of foregut-midgut junction | 5.84e-11 | 25 |
anatomical boundary | 5.84e-11 | 25 |
hepatobiliary system | 5.84e-11 | 25 |
foregut-midgut junction | 5.84e-11 | 25 |
septum transversum | 5.84e-11 | 25 |
sac | 1.45e-10 | 26 |
exocrine gland | 5.69e-09 | 31 |
exocrine system | 5.69e-09 | 31 |
endocrine gland | 5.08e-08 | 35 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.91e-07 | 39 |