FFCP PHASE1:Hg19::chr1:26394114..26394130,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84676 | |EntrezGene=84676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16007 | |HGNC=16007 | ||
|TSSclassifier=strong | |||
|UniProt=Q969Q1 | |UniProt=Q969Q1 | ||
|association_with_transcript=0bp_to_ENST00000374272,NM_032588,uc001bli.1_5end | |association_with_transcript=0bp_to_ENST00000374272,NM_032588,uc001bli.1_5end | ||
|cluster_id=chr1:26394114..26394130,- | |||
|coexpression_cluster_id=C72 | |coexpression_cluster_id=C72 | ||
|description=CAGE_peak_1_at_TRIM63_5end | |description=CAGE_peak_1_at_TRIM63_5end | ||
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|ontology_enrichment_celltype=CL:0000147!1.03e-13!14;CL:0000148!1.21e-11!10;CL:0000541!1.21e-11!10;CL:0002274!2.55e-08!5;CL:0000457!2.55e-08!5;CL:0002191!2.55e-08!5;CL:0000097!2.55e-08!5;CL:0000831!2.55e-08!5;CL:0002028!2.55e-08!5 | |ontology_enrichment_celltype=CL:0000147!1.03e-13!14;CL:0000148!1.21e-11!10;CL:0000541!1.21e-11!10;CL:0002274!2.55e-08!5;CL:0000457!2.55e-08!5;CL:0002191!2.55e-08!5;CL:0000097!2.55e-08!5;CL:0000831!2.55e-08!5;CL:0002028!2.55e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.15e-19;14!CL:0000097;3.08e-15;5!CL:0000148;8.27e-15;10!CL:0000149;2.69e-11;4!CL:0002567;3.05e-10;3!CL:0002586;1.63e-08;3!CL:0000163;2.76e-08;9!CL:0000710;8.21e-07;20 | |ontology_enrichment_celltype_v019=CL:0000147;1.15e-19;14!CL:0000097;3.08e-15;5!CL:0000148;8.27e-15;10!CL:0000149;2.69e-11;4!CL:0002567;3.05e-10;3!CL:0002586;1.63e-08;3!CL:0000163;2.76e-08;9!CL:0000710;8.21e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,9.41e-20,14;CL:0000097,3.08e-15,5;CL:0002028,3.08e-15,5;CL:0000148,8.27e-15,10;CL:0000541,8.27e-15,10;CL:0000149,2.07e-11,4;CL:0002567,3.05e-10,3;CL:0002586,1.24e-08,3;CL:0000163,2.77e-08,9;CL:0000710,8.22e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0006603;1.83e-08;65!UBERON:0005062;1.29e-07;4!UBERON:0007284;1.29e-07;4 | |ontology_enrichment_development_v019=UBERON:0006603;1.83e-08;65!UBERON:0005062;1.29e-07;4!UBERON:0007284;1.29e-07;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;1.50e-07;2!DOID:1909;5.73e-07;2 | |ontology_enrichment_disease_v019=DOID:114;1.50e-07;2!DOID:1909;5.73e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:114,1.50e-07,2;DOID:1909,5.73e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.18e-24!115 | |ontology_enrichment_uberon=UBERON:0007023!2.18e-24!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.38e-12;25!UBERON:0004151;3.44e-10;3!UBERON:0003978;4.79e-10;3!UBERON:0000946;4.79e-10;3!UBERON:0000966;6.00e-09;5!UBERON:0005388;6.00e-09;5!UBERON:0001802;6.00e-09;5!UBERON:0001781;1.63e-08;3!UBERON:0001782;1.63e-08;3!UBERON:0000948;1.75e-07;22!UBERON:0005090;2.74e-07;2!UBERON:0001630;2.74e-07;2!UBERON:0002081;2.87e-07;2!UBERON:0002133;3.88e-07;2!UBERON:0000341;4.94e-07;2!UBERON:0003127;9.43e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0007100;1.38e-12;25!UBERON:0004151;3.44e-10;3!UBERON:0003978;4.79e-10;3!UBERON:0000946;4.79e-10;3!UBERON:0000966;6.00e-09;5!UBERON:0005388;6.00e-09;5!UBERON:0001802;6.00e-09;5!UBERON:0001781;1.63e-08;3!UBERON:0001782;1.63e-08;3!UBERON:0000948;1.75e-07;22!UBERON:0005090;2.74e-07;2!UBERON:0001630;2.74e-07;2!UBERON:0002081;2.87e-07;2!UBERON:0002133;3.88e-07;2!UBERON:0000341;4.94e-07;2!UBERON:0003127;9.43e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.44e-15,114;UBERON:0007100,1.80e-11,27;UBERON:0004151,3.44e-10,3;UBERON:0003978,4.80e-10,3;UBERON:0009751,4.80e-10,3;UBERON:0000946,4.80e-10,3;UBERON:0002523,4.80e-10,3;UBERON:0005983,4.80e-10,3;UBERON:0002165,4.80e-10,3;UBERON:0002062,4.80e-10,3;UBERON:0007280,4.80e-10,3;UBERON:0001782,1.24e-08,3;UBERON:0005424,1.24e-08,3;UBERON:0003103,1.37e-08,68;UBERON:0000966,1.53e-07,6;UBERON:0005388,1.53e-07,6;UBERON:0001802,1.53e-07,6;UBERON:0005090,2.78e-07,2;UBERON:0001630,2.78e-07,2;UBERON:0002081,2.87e-07,2;UBERON:0010227,2.87e-07,2;UBERON:0002133,3.88e-07,2;UBERON:0000341,4.94e-07,2;UBERON:0000948,9.51e-07,24;UBERON:0005498,9.51e-07,24;UBERON:0004140,9.51e-07,24;UBERON:0009881,9.51e-07,24;UBERON:0004141,9.51e-07,24;UBERON:0003084,9.51e-07,24;UBERON:0007005,9.51e-07,24;UBERON:0004139,9.51e-07,24;UBERON:0004291,9.51e-07,24;UBERON:0003127,9.71e-07,2 | |||
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| ||
|short_description=p1@TRIM63 | |short_description=p1@TRIM63 | ||
}} | }} |
Latest revision as of 04:43, 17 September 2015
Short description: | p1@TRIM63 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM63_5end |
Coexpression cluster: | C72_skeletal_tongue_throat_heart_diaphragm_penis_left |
Association with transcript: | 0bp_to_ENST00000374272, NM_032588, uc001bli.1_5end |
EntrezGene: | TRIM63 |
HGNC: | 16007 |
UniProt: | Q969Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 9.41e-20 | 14 |
mast cell | 3.08e-15 | 5 |
basophil mast progenitor cell | 3.08e-15 | 5 |
melanocyte | 8.27e-15 | 10 |
melanoblast | 8.27e-15 | 10 |
visual pigment cell | 2.07e-11 | 4 |
light melanocyte | 3.05e-10 | 3 |
retinal pigment epithelial cell | 1.24e-08 | 3 |
endocrine cell | 2.77e-08 | 9 |
neurecto-epithelial cell | 8.22e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.44e-15 | 114 |
primary circulatory organ | 1.80e-11 | 27 |
cardiac chamber | 3.44e-10 | 3 |
valve | 4.80e-10 | 3 |
cardiac mesenchyme | 4.80e-10 | 3 |
cardial valve | 4.80e-10 | 3 |
tunica intima | 4.80e-10 | 3 |
heart layer | 4.80e-10 | 3 |
endocardium | 4.80e-10 | 3 |
endocardial cushion | 4.80e-10 | 3 |
presumptive endocardium | 4.80e-10 | 3 |
pigmented layer of retina | 1.24e-08 | 3 |
presumptive retinal pigmented epithelium | 1.24e-08 | 3 |
compound organ | 1.37e-08 | 68 |
retina | 1.53e-07 | 6 |
photoreceptor array | 1.53e-07 | 6 |
posterior segment of eyeball | 1.53e-07 | 6 |
muscle structure | 2.78e-07 | 2 |
muscle organ | 2.78e-07 | 2 |
cardiac atrium | 2.87e-07 | 2 |
future cardiac atrium | 2.87e-07 | 2 |
atrioventricular valve | 3.88e-07 | 2 |
throat | 4.94e-07 | 2 |
heart | 9.51e-07 | 24 |
primitive heart tube | 9.51e-07 | 24 |
primary heart field | 9.51e-07 | 24 |
anterior lateral plate mesoderm | 9.51e-07 | 24 |
heart tube | 9.51e-07 | 24 |
heart primordium | 9.51e-07 | 24 |
cardiac mesoderm | 9.51e-07 | 24 |
cardiogenic plate | 9.51e-07 | 24 |
heart rudiment | 9.51e-07 | 24 |
open tracheal system trachea | 9.71e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.50e-07 | 2 |
melanoma | 5.73e-07 | 2 |