FFCP PHASE1:Hg19::chr12:52430894..52430952,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000546842_5end | |association_with_transcript=-8bp_to_ENST00000546842_5end | ||
|cluster_id=chr12:52430894..52430952,+ | |||
|description=CAGE_peak_3_at_NR4A1_5end | |description=CAGE_peak_3_at_NR4A1_5end | ||
|id=chr12:52430894..52430952,+ | |id=chr12:52430894..52430952,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.80e-13!42;CL:0000860!1.81e-12!45 | |ontology_enrichment_celltype=CL:0002057!1.80e-13!42;CL:0000860!1.81e-12!45 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.89e-10;33!CL:0002057;7.89e-10;33 | |ontology_enrichment_celltype_v019=CL:0000860;7.89e-10;33!CL:0002057;7.89e-10;33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.26e-13,42;CL:0002057,2.26e-13,42;CL:0000473,8.56e-10,48;CL:0000234,8.56e-10,48;CL:0000557,9.69e-08,67;CL:0000766,1.83e-07,72;CL:0000839,6.41e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;3.24e-10;42 | |ontology_enrichment_development_v019=CL:0002057;3.24e-10;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;6.03e-07;22!DOID:2994;6.03e-07;22 | |ontology_enrichment_disease_v019=DOID:3095;6.03e-07;22!DOID:2994;6.03e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,5.83e-07,22;DOID:2994,5.83e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000468!7.88e-13!659;UBERON:0000062!2.51e-12!511;UBERON:0007023!3.57e-11!115;UBERON:0000467!7.14e-10!625;UBERON:0000480!8.06e-10!626;UBERON:0000922!1.45e-08!612;UBERON:0002050!5.50e-08!605;UBERON:0005423!5.50e-08!605;UBERON:0000923!6.49e-08!604;UBERON:0005291!6.49e-08!604;UBERON:0006598!6.49e-08!604;UBERON:0002532!6.49e-08!604 | |ontology_enrichment_uberon=UBERON:0000468!7.88e-13!659;UBERON:0000062!2.51e-12!511;UBERON:0007023!3.57e-11!115;UBERON:0000467!7.14e-10!625;UBERON:0000480!8.06e-10!626;UBERON:0000922!1.45e-08!612;UBERON:0002050!5.50e-08!605;UBERON:0005423!5.50e-08!605;UBERON:0000923!6.49e-08!604;UBERON:0005291!6.49e-08!604;UBERON:0006598!6.49e-08!604;UBERON:0002532!6.49e-08!604 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.49e-10,114;UBERON:0001474,1.70e-07,82;UBERON:0001434,5.22e-07,100 | |||
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| ||
|short_description=p3@NR4A1 | |short_description=p3@NR4A1 | ||
}} | }} |
Latest revision as of 21:03, 18 September 2015
Short description: | p3@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR4A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000546842_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.26e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.26e-13 | 42 |
defensive cell | 8.56e-10 | 48 |
phagocyte | 8.56e-10 | 48 |
granulocyte monocyte progenitor cell | 9.69e-08 | 67 |
myeloid leukocyte | 1.83e-07 | 72 |
myeloid lineage restricted progenitor cell | 6.41e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.49e-10 | 114 |
bone element | 1.70e-07 | 82 |
skeletal system | 5.22e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.83e-07 | 22 |
germ cell cancer | 5.83e-07 | 22 |