FFCP PHASE1:Hg19::chr4:41362796..41362841,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UPQ0,E9PHM7,D6RD46 | |UniProt=Q9UPQ0,E9PHM7,D6RD46 | ||
|association_with_transcript=0bp_to_ENST00000313860,ENST00000508501,ENST00000512228,ENST00000512632,ENST00000512820,ENST00000512946,ENST00000514190,NM_001112717,NM_001112718,NM_014988,uc003gvt.1,uc003gvu.3,uc003gvv.3,uc003gvw.3,uc003gvx.3,uc003gwe.3_5end | |association_with_transcript=0bp_to_ENST00000313860,ENST00000508501,ENST00000512228,ENST00000512632,ENST00000512820,ENST00000512946,ENST00000514190,NM_001112717,NM_001112718,NM_014988,uc003gvt.1,uc003gvu.3,uc003gvv.3,uc003gvw.3,uc003gvx.3,uc003gwe.3_5end | ||
|cluster_id=chr4:41362796..41362841,+ | |||
|coexpression_cluster_id=C4413 | |coexpression_cluster_id=C4413 | ||
|description=CAGE_peak_1_at_LIMCH1_5end | |description=CAGE_peak_1_at_LIMCH1_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.53e-10;82!UBERON:0002532;5.26e-07;206!UBERON:0010316;5.26e-07;206 | |ontology_enrichment_development_v019=UBERON:0006601;5.53e-10;82!UBERON:0002532;5.26e-07;206!UBERON:0010316;5.26e-07;206 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003528;2.28e-17;34!UBERON:0002020;2.28e-17;34!UBERON:0001893;2.47e-17;34!UBERON:0002791;3.89e-17;32!UBERON:0001869;4.87e-17;32!UBERON:0002780;1.26e-16;41!UBERON:0001890;1.26e-16;41!UBERON:0000073;2.73e-15;53!UBERON:0002616;2.73e-15;53!UBERON:0000956;1.18e-14;25!UBERON:0000203;1.18e-14;25!UBERON:0002619;7.62e-14;22!UBERON:0001950;1.38e-12;20!UBERON:0000955;4.54e-11;68!UBERON:0001017;3.25e-10;75!UBERON:0001016;4.25e-10;83!UBERON:0007023;5.29e-10;114!UBERON:0000125;4.17e-07;9!UBERON:0002308;4.17e-07;9!UBERON:0002420;5.64e-07;9!UBERON:0007245;5.64e-07;9!UBERON:0010009;5.64e-07;9!UBERON:0010011;5.64e-07;9!UBERON:0000454;5.64e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0003528;2.28e-17;34!UBERON:0002020;2.28e-17;34!UBERON:0001893;2.47e-17;34!UBERON:0002791;3.89e-17;32!UBERON:0001869;4.87e-17;32!UBERON:0002780;1.26e-16;41!UBERON:0001890;1.26e-16;41!UBERON:0000073;2.73e-15;53!UBERON:0002616;2.73e-15;53!UBERON:0000956;1.18e-14;25!UBERON:0000203;1.18e-14;25!UBERON:0002619;7.62e-14;22!UBERON:0001950;1.38e-12;20!UBERON:0000955;4.54e-11;68!UBERON:0001017;3.25e-10;75!UBERON:0001016;4.25e-10;83!UBERON:0007023;5.29e-10;114!UBERON:0000125;4.17e-07;9!UBERON:0002308;4.17e-07;9!UBERON:0002420;5.64e-07;9!UBERON:0007245;5.64e-07;9!UBERON:0010009;5.64e-07;9!UBERON:0010011;5.64e-07;9!UBERON:0000454;5.64e-07;9 | ||
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|phase1_expression=62.679040848342,60.3763477372572,67.9400227742581,82.0601046495669,34.8629653653284,34.0212024399144,20.2639902534648,0,0,3.93174298402414,11.1648186875588,0.218441372130172,0.263766978228454,0.123766352960047,0.994192127183747,0,2.41077811209591,1.46062018077475,0.975865597581014,1.60057375499824,0.612002073732759,3.13454721478088,28.3373627259746,18.7517962349851,43.4377532998018,0,0,0,0,0.383829398097213,0.464448369948228,0,0,0,0,0,2.05520307534393,0.553995408531877,0,0,0.447830948479849,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0.22465726229299,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,4.48406850385229,1.84368859342554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,8.05534139614241,10.843174571537,15.5414752297126,11.2980284789442,7.15757352345989,10.705967146658,1.03988298880475,0.665188192387692,1.05401742831751,20.3017567021455,0.364295288292542,0,3.57002133020152,3.65672448328461,3.19099105245276,0,0,0,8.54678351676832,7.74211135595512,7.28995053375948,3.39184765154406,7.1314904155684,3.85165258716094,6.06085402956751,29.2010937861342,29.5285998029969,37.8234292424077,5.63961043952806,6.84244895146661,10.006544359475,2.94130464276695,4.0507097394088,16.6097494608388,18.1868791827198,9.68458732156571,4.5994991239765,4.74632829784064,5.67925406184263,0,0,0,9.44246708221105,22.9201226112889,1.05927344650575,4.87622255272983,2.83734705758686,4.48542080113846,5.33744978648525,2.4666754841716,4.97937656639626,9.0256150286691,4.7403951902903,0.302714855289863,0,0.234321431833797,0,1.1409436430889,0,0,0.323745888736263,0,0,0,0.309977343527296,1.18800285728205,0.989067717114227,0,0,1.34668891163253,0.500474079487857,0,1.75591048352335,0.919463387397059,0.45071417671979,3.97012641060074,5.56107870635472,3.20336083227851,5.51022943014861,1.80054657650641,1.44273540933814,22.4147269839697,14.3309979375324,38.1434510865262,39.1696760748018,27.2628476183644,18.3179298298176,12.2851003182297,17.7504796258307,17.8331213862923,8.30846902321389,0.57978255948989,0,0.573609190778008,0.975789649036763,6.36142887943129,2.67246068599892,2.07322110030741,3.5324919122588,9.85438869504741,0,0,0,0,0,28.2753252095227,32.0310911148393,29.4033456457848,27.9043751012957,32.0282782815837,29.8960980079982,21.9775032301068,31.0029914898047,23.0848294167834,29.5262181849859,2.80483547606892,0,2.94017422771084,30.4212083572394,15.725235466842,25.4039659873004,0,3.07471096357784,4.28919525746314,0.548751427043128,0,0.100528972411631,1.20364978706088,0,0,0,5.68058984377876,3.28744343860301,16.0246757014792,8.33373922637899,26.4453271606092,0.790204397959275,0,0.738651018262192,0.702012795417713,0.743155811443641,0.93733833986777,0,0.425325291727159,0,0,0.383382679165211,0,0.088048434013226,0.621984346622316,0.144119953416961,0.37872730027914,0.190493682876507,0,0,1.71072446022705,0.411309970813294,0,0,0,0,0,11.8929978497156,0,0,7.97814349754611,10.4007436911366,0,1.41849132023278,0,15.0126893341055,0.542621605391443,0.823240336780769,0.325736184293735,14.5710698984444,2.37585561880029,0.602878754119172,0,0.699810938274399,0,0,0,0.958499421966331,0,11.4109524032575,6.22559618670591,5.54786070886035,25.6057177433051,0,0.197030760201927,0,0,3.04913549066956,19.5209780786433,13.9191986299985,9.88345965472658,10.2070200264506,0,0,0,2.82190430954022,0,0,1.45579603071565,0,1.57702415033935,1.99140405487612,2.70851489754947,2.27407504055985,1.03473071292505,1.32845119707087,0.368738337083406,7.81952530212746,0,0.343143423810856,0,0,0.213455115606889,0.909382714338778,1.66435439510497,1.20956117331872,52.8469630653995,263.340746162315,71.8489841748668,34.5975702990393,102.341449813341,42.3045812607688,38.5886972756977,0.925258162815933,0.532685175939381,0.657017248110473,1.03850885836724,1.74315567689939,0.604297247958111,3.40860999515584,10.3130707608204,9.98885699032079,0,10.7522020266728,2.25599806453706,2.6185214615501,2.35304930753057,2.92278449306521,7.17751076471555,13.6480060885076,7.31402932689017,19.8642642813968,43.183630753281,0,0,2.03901018436031,2.49322802678617,2.68649705666614,0,0,29.7482145135011,20.9929373247812,22.1257308371726,53.6843670684633,12.6365861449314,11.5513299888823,0,0.650060246036521,9.64103579064957,0.386682873168488,0,0,0.137836572484531,0.214840489736547,0.145016693914229,0.255679882248303,5.07482603186403,2.31398881505369,4.42037154939744,5.87018477475087,16.8933494028768,7.90237433805386,9.4443704049192,9.7585217822484,6.77673876387395,9.04920251538937,6.08953094452551,9.266210955196,25.7624796135584,0.372158369359667,0,2.2875623270859,0.255897791311334,0.42793898803392,0,0,1.2591072030832,3.56898138656871,0.706874414074119,11.1200364865324,30.1169610228716,5.89761838734574,0.975267478179181,12.4293879711955,44.3730616378373,5.86949619054339,2.68670320712054,0,8.27048015319186,19.9031692572366,22.3609951479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| ||
|short_description=p1@LIMCH1 | |short_description=p1@LIMCH1 | ||
}} | }} |
Latest revision as of 19:36, 17 September 2015
Short description: | p1@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIMCH1_5end |
Coexpression cluster: | C4413_Preadipocyte_optic_globus_thalamus_somatostatinoma_spinal_substantia |
Association with transcript: | 0bp_to_ENST00000313860, ENST00000508501, ENST00000512228, ENST00000512632, ENST00000512820, ENST00000512946, ENST00000514190, NM_001112717, NM_001112718, NM_014988, uc003gvt.1, uc003gvu.3, uc003gvv.3, uc003gvw.3, uc003gvx.3, uc003gwe.3_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | Q9UPQ0E9PHM7D6RD46 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data