FFCP PHASE1:Hg19::chr1:59165763..59165780,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114803 | |EntrezGene=114803 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29401 | |HGNC=29401 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VVJ2 | |UniProt=Q5VVJ2 | ||
|association_with_transcript=0bp_to_ENST00000472487_5end | |association_with_transcript=0bp_to_ENST00000472487_5end | ||
|cluster_id=chr1:59165763..59165780,- | |||
|description=CAGE_peak_2_at_MYSM1_5end | |description=CAGE_peak_2_at_MYSM1_5end | ||
|id=chr1:59165763..59165780,- | |id=chr1:59165763..59165780,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.92e-20!82;UBERON:0005743!2.06e-18!86;UBERON:0002616!2.11e-17!59;UBERON:0000073!3.55e-17!94;UBERON:0001016!3.55e-17!94;UBERON:0001049!7.04e-17!57;UBERON:0005068!7.04e-17!57;UBERON:0006241!7.04e-17!57;UBERON:0007135!7.04e-17!57;UBERON:0002780!1.19e-16!41;UBERON:0001890!1.19e-16!41;UBERON:0006240!1.19e-16!41;UBERON:0000955!1.75e-16!69;UBERON:0006238!1.75e-16!69;UBERON:0003080!1.68e-15!42;UBERON:0002020!1.93e-14!34;UBERON:0003528!1.93e-14!34;UBERON:0001893!3.47e-14!34;UBERON:0002791!1.20e-13!33;UBERON:0001869!1.65e-13!32;UBERON:0000956!7.15e-12!25;UBERON:0000203!7.15e-12!25;UBERON:0002619!7.35e-12!22;UBERON:0001950!1.19e-10!20;UBERON:0002346!1.34e-09!90;UBERON:0003075!1.40e-09!86;UBERON:0007284!1.40e-09!86;UBERON:0007023!1.67e-09!115;UBERON:0000924!4.36e-09!173;UBERON:0006601!4.36e-09!173;UBERON:0004121!5.68e-09!169;UBERON:0000153!1.93e-08!129;UBERON:0007811!1.93e-08!129;UBERON:0000033!2.93e-08!123;UBERON:0003056!1.02e-07!61 | |ontology_enrichment_uberon=UBERON:0001017!3.92e-20!82;UBERON:0005743!2.06e-18!86;UBERON:0002616!2.11e-17!59;UBERON:0000073!3.55e-17!94;UBERON:0001016!3.55e-17!94;UBERON:0001049!7.04e-17!57;UBERON:0005068!7.04e-17!57;UBERON:0006241!7.04e-17!57;UBERON:0007135!7.04e-17!57;UBERON:0002780!1.19e-16!41;UBERON:0001890!1.19e-16!41;UBERON:0006240!1.19e-16!41;UBERON:0000955!1.75e-16!69;UBERON:0006238!1.75e-16!69;UBERON:0003080!1.68e-15!42;UBERON:0002020!1.93e-14!34;UBERON:0003528!1.93e-14!34;UBERON:0001893!3.47e-14!34;UBERON:0002791!1.20e-13!33;UBERON:0001869!1.65e-13!32;UBERON:0000956!7.15e-12!25;UBERON:0000203!7.15e-12!25;UBERON:0002619!7.35e-12!22;UBERON:0001950!1.19e-10!20;UBERON:0002346!1.34e-09!90;UBERON:0003075!1.40e-09!86;UBERON:0007284!1.40e-09!86;UBERON:0007023!1.67e-09!115;UBERON:0000924!4.36e-09!173;UBERON:0006601!4.36e-09!173;UBERON:0004121!5.68e-09!169;UBERON:0000153!1.93e-08!129;UBERON:0007811!1.93e-08!129;UBERON:0000033!2.93e-08!123;UBERON:0003056!1.02e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.73e-16;34!UBERON:0003528;2.26e-16;34!UBERON:0002020;2.26e-16;34!UBERON:0001869;2.42e-16;32!UBERON:0002791;3.21e-16;32!UBERON:0000956;1.62e-15;25!UBERON:0000203;1.62e-15;25!UBERON:0002780;1.97e-15;41!UBERON:0001890;1.97e-15;41!UBERON:0002619;4.32e-15;22!UBERON:0001950;1.35e-13;20!UBERON:0000073;3.97e-13;53!UBERON:0002616;3.97e-13;53!UBERON:0000955;7.09e-10;68!UBERON:0001017;3.13e-09;75!UBERON:0001016;2.99e-08;83 | |ontology_enrichment_uberon_v019=UBERON:0001893;1.73e-16;34!UBERON:0003528;2.26e-16;34!UBERON:0002020;2.26e-16;34!UBERON:0001869;2.42e-16;32!UBERON:0002791;3.21e-16;32!UBERON:0000956;1.62e-15;25!UBERON:0000203;1.62e-15;25!UBERON:0002780;1.97e-15;41!UBERON:0001890;1.97e-15;41!UBERON:0002619;4.32e-15;22!UBERON:0001950;1.35e-13;20!UBERON:0000073;3.97e-13;53!UBERON:0002616;3.97e-13;53!UBERON:0000955;7.09e-10;68!UBERON:0001017;3.13e-09;75!UBERON:0001016;2.99e-08;83 | ||
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| ||
|short_description=p2@MYSM1 | |short_description=p2@MYSM1 | ||
}} | }} |
Latest revision as of 17:04, 18 September 2015
Short description: | p2@MYSM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MYSM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000472487_5end |
EntrezGene: | MYSM1 |
HGNC: | 29401 |
UniProt: | Q5VVJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.26e-27 | 81 |
nervous system | 7.17e-25 | 89 |
neural tube | 3.33e-23 | 56 |
neural rod | 3.33e-23 | 56 |
future spinal cord | 3.33e-23 | 56 |
neural keel | 3.33e-23 | 56 |
regional part of nervous system | 7.46e-23 | 53 |
regional part of brain | 7.46e-23 | 53 |
brain | 2.10e-22 | 68 |
future brain | 2.10e-22 | 68 |
regional part of forebrain | 4.83e-22 | 41 |
forebrain | 4.83e-22 | 41 |
anterior neural tube | 4.83e-22 | 41 |
future forebrain | 4.83e-22 | 41 |
brain grey matter | 3.14e-19 | 34 |
gray matter | 3.14e-19 | 34 |
telencephalon | 6.83e-19 | 34 |
cerebral hemisphere | 4.99e-18 | 32 |
regional part of telencephalon | 5.76e-18 | 32 |
regional part of cerebral cortex | 2.23e-15 | 22 |
cerebral cortex | 2.35e-15 | 25 |
pallium | 2.35e-15 | 25 |
neocortex | 8.03e-14 | 20 |
neural plate | 1.68e-13 | 82 |
presumptive neural plate | 1.68e-13 | 82 |
neurectoderm | 7.30e-13 | 86 |
pre-chordal neural plate | 1.47e-12 | 61 |
ecto-epithelium | 3.82e-12 | 104 |
ectoderm-derived structure | 4.38e-12 | 171 |
ectoderm | 4.38e-12 | 171 |
presumptive ectoderm | 4.38e-12 | 171 |
adult organism | 5.16e-11 | 114 |
structure with developmental contribution from neural crest | 6.51e-10 | 132 |