FFCP PHASE1:Hg19::chr1:19426636..19426650,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23352 | |EntrezGene=23352 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30313 | |HGNC=30313 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_ENST00000467272_5end | |association_with_transcript=-16bp_to_ENST00000467272_5end | ||
|cluster_id=chr1:19426636..19426650,- | |||
|coexpression_cluster_id=C51 | |coexpression_cluster_id=C51 | ||
|description=CAGE_peak_19_at_UBR4_5end | |description=CAGE_peak_19_at_UBR4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000313!2.75e-14!1;CL:0002535!4.09e-08!2;CL:0000159!8.60e-08!2 | |ontology_enrichment_celltype=CL:0000313!2.75e-14!1;CL:0002535!4.09e-08!2;CL:0000159!8.60e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002535;4.66e-21;2 | |ontology_enrichment_celltype_v019=CL:0002535;4.66e-21;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,4.66e-21,2 | |||
|ontology_enrichment_development_v019=UBERON:0003918;7.21e-17;10!UBERON:0007687;7.21e-17;10 | |ontology_enrichment_development_v019=UBERON:0003918;7.21e-17;10!UBERON:0007687;7.21e-17;10 | ||
|ontology_enrichment_disease=DOID:2152!2.75e-14!1;DOID:3493!4.69e-08!2 | |ontology_enrichment_disease=DOID:2152!2.75e-14!1;DOID:3493!4.69e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;6.30e-21;2!DOID:4362;2.97e-09;5 | |ontology_enrichment_disease_v019=DOID:3493;6.30e-21;2!DOID:4362;2.97e-09;5 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,6.96e-21,2;DOID:4362,2.97e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0004911!2.75e-14!1;UBERON:0006955!4.09e-08!2;UBERON:0004801!4.09e-08!2;UBERON:0004909!8.60e-08!2 | |ontology_enrichment_uberon=UBERON:0004911!2.75e-14!1;UBERON:0006955!4.09e-08!2;UBERON:0004801!4.09e-08!2;UBERON:0004909!8.60e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;4.66e-21;2!UBERON:0004801;4.66e-21;2!UBERON:0000002;6.34e-08;6!UBERON:0001560;6.34e-08;6!UBERON:0002113;1.25e-07;24!UBERON:0011143;1.25e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0006955;4.66e-21;2!UBERON:0004801;4.66e-21;2!UBERON:0000002;6.34e-08;6!UBERON:0001560;6.34e-08;6!UBERON:0002113;1.25e-07;24!UBERON:0011143;1.25e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,4.66e-21,2;UBERON:0004801,4.66e-21,2;UBERON:0000002,6.34e-08,6;UBERON:0001560,6.34e-08,6;UBERON:0002113,4.02e-07,26;UBERON:0003918,4.02e-07,26;UBERON:0011143,4.02e-07,26;UBERON:0005095,4.02e-07,26;UBERON:0007687,4.02e-07,26 | |||
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|short_description=p19@UBR4 | |short_description=p19@UBR4 | ||
}} | }} |
Latest revision as of 11:43, 19 September 2015
Short description: | p19@UBR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_UBR4_5end |
Coexpression cluster: | C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas |
Association with transcript: | -16bp_to_ENST00000467272_5end |
EntrezGene: | UBR4 |
HGNC: | 30313 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 4.66e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 4.66e-21 | 2 |
cervix epithelium | 4.66e-21 | 2 |
uterine cervix | 6.34e-08 | 6 |
neck of organ | 6.34e-08 | 6 |
kidney | 4.02e-07 | 26 |
kidney mesenchyme | 4.02e-07 | 26 |
upper urinary tract | 4.02e-07 | 26 |
kidney rudiment | 4.02e-07 | 26 |
kidney field | 4.02e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 6.96e-21 | 2 |
cervical cancer | 2.97e-09 | 5 |