FFCP PHASE1:Hg19::chr9:12693336..12693460,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7306 | |EntrezGene=7306 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12450 | |HGNC=12450 | ||
|TSSclassifier=strong | |||
|UniProt=Q5W0M5,P17643 | |UniProt=Q5W0M5,P17643 | ||
|association_with_transcript=0bp_to_ENST00000381137,ENST00000388918,NM_000550,uc003zkv.3_5end | |association_with_transcript=0bp_to_ENST00000381137,ENST00000388918,NM_000550,uc003zkv.3_5end | ||
|cluster_id=chr9:12693336..12693460,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_1_at_TYRP1_5end | |description=CAGE_peak_1_at_TYRP1_5end | ||
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|ontology_enrichment_celltype=CL:0000147!4.16e-29!14;CL:0000148!1.03e-24!10;CL:0000541!1.03e-24!10;CL:0000325!4.17e-16!39;CL:0000710!1.19e-15!20;CL:0000075!1.52e-14!27;CL:0002077!2.35e-13!33;CL:0000453!1.60e-12!5;CL:0000149!5.00e-11!4;CL:0002567!7.56e-09!3;CL:0002586!1.37e-08!3;CL:0002322!9.44e-08!5;CL:0000990!9.82e-07!8 | |ontology_enrichment_celltype=CL:0000147!4.16e-29!14;CL:0000148!1.03e-24!10;CL:0000541!1.03e-24!10;CL:0000325!4.17e-16!39;CL:0000710!1.19e-15!20;CL:0000075!1.52e-14!27;CL:0002077!2.35e-13!33;CL:0000453!1.60e-12!5;CL:0000149!5.00e-11!4;CL:0002567!7.56e-09!3;CL:0002586!1.37e-08!3;CL:0002322!9.44e-08!5;CL:0000990!9.82e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.59e-48;14!CL:0000148;6.70e-39;10!CL:0000149;4.28e-20;4!CL:0000710;1.26e-18;20!CL:0002567;7.94e-16;3!CL:0000453;2.03e-15;5!CL:0002586;2.55e-15;3!CL:0002077;2.19e-13;34!CL:0000075;2.30e-13;27!CL:0000990;1.31e-08;8!CL:0000451;4.73e-07;10 | |ontology_enrichment_celltype_v019=CL:0000147;1.59e-48;14!CL:0000148;6.70e-39;10!CL:0000149;4.28e-20;4!CL:0000710;1.26e-18;20!CL:0002567;7.94e-16;3!CL:0000453;2.03e-15;5!CL:0002586;2.55e-15;3!CL:0002077;2.19e-13;34!CL:0000075;2.30e-13;27!CL:0000990;1.31e-08;8!CL:0000451;4.73e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.40e-48,14;CL:0000148,5.88e-39,10;CL:0000541,5.88e-39,10;CL:0000149,4.29e-20,4;CL:0000710,1.19e-18,20;CL:0002567,7.94e-16,3;CL:0000453,2.23e-15,5;CL:0002586,2.55e-15,3;CL:0002077,3.32e-15,34;CL:0000075,2.20e-13,27;CL:0000990,1.38e-08,8;CL:0000333,8.48e-08,41;CL:0000451,4.93e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0006241;6.47e-07;3!UBERON:0003057;6.47e-07;3 | |ontology_enrichment_development_v019=UBERON:0006241;6.47e-07;3!UBERON:0003057;6.47e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;1.53e-10;2 | |ontology_enrichment_disease_v019=DOID:1909;1.53e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.64e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.95e-11!115;UBERON:0000020!3.00e-10!23;UBERON:0002346!3.50e-10!90;UBERON:0003075!5.65e-10!86;UBERON:0007284!5.65e-10!86;UBERON:0000970!5.69e-10!20;UBERON:0001032!1.02e-09!24;UBERON:0004456!1.02e-09!24;UBERON:0007625!1.88e-09!11;UBERON:0002104!2.16e-09!21;UBERON:0000966!9.52e-09!5;UBERON:0005388!9.52e-09!5;UBERON:0001802!9.52e-09!5;UBERON:0001781!1.37e-08!3;UBERON:0001782!1.37e-08!3;UBERON:0005424!1.37e-08!3;UBERON:0000019!2.00e-08!19;UBERON:0000047!2.00e-08!19;UBERON:0004088!2.00e-08!19;UBERON:0003072!2.00e-08!19;UBERON:0003071!2.00e-08!19;UBERON:0004128!2.00e-08!19;UBERON:0001896!2.65e-08!3;UBERON:0005290!2.65e-08!3;UBERON:0010096!2.65e-08!3;UBERON:0002240!8.88e-08!3;UBERON:0001456!1.88e-07!21;UBERON:0003076!5.93e-07!15;UBERON:0003057!5.93e-07!15 | |ontology_enrichment_uberon=UBERON:0007023!1.95e-11!115;UBERON:0000020!3.00e-10!23;UBERON:0002346!3.50e-10!90;UBERON:0003075!5.65e-10!86;UBERON:0007284!5.65e-10!86;UBERON:0000970!5.69e-10!20;UBERON:0001032!1.02e-09!24;UBERON:0004456!1.02e-09!24;UBERON:0007625!1.88e-09!11;UBERON:0002104!2.16e-09!21;UBERON:0000966!9.52e-09!5;UBERON:0005388!9.52e-09!5;UBERON:0001802!9.52e-09!5;UBERON:0001781!1.37e-08!3;UBERON:0001782!1.37e-08!3;UBERON:0005424!1.37e-08!3;UBERON:0000019!2.00e-08!19;UBERON:0000047!2.00e-08!19;UBERON:0004088!2.00e-08!19;UBERON:0003072!2.00e-08!19;UBERON:0003071!2.00e-08!19;UBERON:0004128!2.00e-08!19;UBERON:0001896!2.65e-08!3;UBERON:0005290!2.65e-08!3;UBERON:0010096!2.65e-08!3;UBERON:0002240!8.88e-08!3;UBERON:0001456!1.88e-07!21;UBERON:0003076!5.93e-07!15;UBERON:0003057!5.93e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;5.10e-16;5!UBERON:0005388;5.10e-16;5!UBERON:0001802;5.10e-16;5!UBERON:0001781;2.55e-15;3!UBERON:0001782;2.55e-15;3!UBERON:0001896;9.90e-15;3!UBERON:0005290;9.90e-15;3!UBERON:0000020;2.76e-09;23!UBERON:0001032;7.37e-09;24!UBERON:0004456;7.37e-09;24!UBERON:0000970;3.71e-08;20!UBERON:0002104;9.74e-08;21!UBERON:0002298;1.35e-07;6!UBERON:0002240;6.47e-07;3!UBERON:0005174;6.47e-07;3!UBERON:0001137;6.47e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000966;5.10e-16;5!UBERON:0005388;5.10e-16;5!UBERON:0001802;5.10e-16;5!UBERON:0001781;2.55e-15;3!UBERON:0001782;2.55e-15;3!UBERON:0001896;9.90e-15;3!UBERON:0005290;9.90e-15;3!UBERON:0000020;2.76e-09;23!UBERON:0001032;7.37e-09;24!UBERON:0004456;7.37e-09;24!UBERON:0000970;3.71e-08;20!UBERON:0002104;9.74e-08;21!UBERON:0002298;1.35e-07;6!UBERON:0002240;6.47e-07;3!UBERON:0005174;6.47e-07;3!UBERON:0001137;6.47e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.55e-15,3;UBERON:0005424,2.55e-15,3;UBERON:0001896,9.23e-15,3;UBERON:0005290,9.23e-15,3;UBERON:0010096,9.23e-15,3;UBERON:0000966,2.29e-13,6;UBERON:0005388,2.29e-13,6;UBERON:0001802,2.29e-13,6;UBERON:0001781,1.30e-11,4;UBERON:0010371,2.64e-10,104;UBERON:0000020,7.37e-09,24;UBERON:0001032,7.37e-09,24;UBERON:0004456,7.37e-09,24;UBERON:0003075,5.59e-08,82;UBERON:0007284,5.59e-08,82;UBERON:0000970,1.02e-07,21;UBERON:0002104,1.02e-07,21;UBERON:0002298,1.31e-07,6;UBERON:0003076,1.60e-07,15;UBERON:0003057,1.60e-07,15;UBERON:0002346,1.75e-07,86;UBERON:0002240,5.90e-07,3;UBERON:0005174,5.90e-07,3;UBERON:0001137,5.90e-07,3 | |||
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| ||
|short_description=p1@TYRP1 | |short_description=p1@TYRP1 | ||
}} | }} |
Latest revision as of 23:30, 24 September 2015
Short description: | p1@TYRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TYRP1_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000381137, ENST00000388918, NM_000550, uc003zkv.3_5end |
EntrezGene: | TYRP1 |
HGNC: | 12450 |
UniProt: | Q5W0M5P17643 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.40e-48 | 14 |
melanocyte | 5.88e-39 | 10 |
melanoblast | 5.88e-39 | 10 |
visual pigment cell | 4.29e-20 | 4 |
neurecto-epithelial cell | 1.19e-18 | 20 |
light melanocyte | 7.94e-16 | 3 |
Langerhans cell | 2.23e-15 | 5 |
retinal pigment epithelial cell | 2.55e-15 | 3 |
ecto-epithelial cell | 3.32e-15 | 34 |
columnar/cuboidal epithelial cell | 2.20e-13 | 27 |
conventional dendritic cell | 1.38e-08 | 8 |
migratory neural crest cell | 8.48e-08 | 41 |
dendritic cell | 4.93e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.55e-15 | 3 |
presumptive retinal pigmented epithelium | 2.55e-15 | 3 |
medulla oblongata | 9.23e-15 | 3 |
myelencephalon | 9.23e-15 | 3 |
future myelencephalon | 9.23e-15 | 3 |
retina | 2.29e-13 | 6 |
photoreceptor array | 2.29e-13 | 6 |
posterior segment of eyeball | 2.29e-13 | 6 |
layer of retina | 1.30e-11 | 4 |
ecto-epithelium | 2.64e-10 | 104 |
sense organ | 7.37e-09 | 24 |
sensory system | 7.37e-09 | 24 |
entire sense organ system | 7.37e-09 | 24 |
neural plate | 5.59e-08 | 82 |
presumptive neural plate | 5.59e-08 | 82 |
eye | 1.02e-07 | 21 |
visual system | 1.02e-07 | 21 |
brainstem | 1.31e-07 | 6 |
posterior neural tube | 1.60e-07 | 15 |
chordal neural plate | 1.60e-07 | 15 |
neurectoderm | 1.75e-07 | 86 |
spinal cord | 5.90e-07 | 3 |
dorsal region element | 5.90e-07 | 3 |
dorsum | 5.90e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.64e-10 | 2 |