FFCP PHASE1:Hg19::chr10:15183694..15183716,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9397 | |EntrezGene=9397 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7858 | |HGNC=7858 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-342bp_to_ENST00000478580_5end | |association_with_transcript=-342bp_to_ENST00000478580_5end | ||
|cluster_id=chr10:15183694..15183716,- | |||
|coexpression_cluster_id=C580 | |coexpression_cluster_id=C580 | ||
|description=CAGE_peak_4_at_NMT2_5end | |description=CAGE_peak_4_at_NMT2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;3.43e-12;2 | |ontology_enrichment_celltype_v019=CL:0000047;3.43e-12;2 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.45e-12;2 | |ontology_enrichment_development_v019=UBERON:0010122;2.45e-12;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.44e-33!57;UBERON:0005068!2.44e-33!57;UBERON:0006241!2.44e-33!57;UBERON:0007135!2.44e-33!57;UBERON:0002616!4.63e-29!59;UBERON:0000955!1.68e-28!69;UBERON:0006238!1.68e-28!69;UBERON:0001017!8.99e-28!82;UBERON:0002780!2.18e-26!41;UBERON:0001890!2.18e-26!41;UBERON:0006240!2.18e-26!41;UBERON:0005743!3.29e-26!86;UBERON:0003080!1.14e-25!42;UBERON:0003075!2.60e-24!86;UBERON:0007284!2.60e-24!86;UBERON:0000073!3.65e-23!94;UBERON:0001016!3.65e-23!94;UBERON:0002346!5.80e-23!90;UBERON:0002020!5.98e-22!34;UBERON:0003528!5.98e-22!34;UBERON:0007023!6.33e-22!115;UBERON:0003056!9.18e-21!61;UBERON:0001869!2.69e-20!32;UBERON:0001893!5.93e-19!34;UBERON:0000153!1.90e-18!129;UBERON:0007811!1.90e-18!129;UBERON:0000369!1.55e-17!4;UBERON:0002435!1.55e-17!4;UBERON:0000204!1.55e-17!4;UBERON:0010082!1.55e-17!4;UBERON:0002791!6.97e-17!33;UBERON:0000033!2.20e-16!123;UBERON:0002308!4.19e-16!9;UBERON:0000125!4.19e-16!9;UBERON:0005383!1.02e-13!3;UBERON:0005382!1.02e-13!3;UBERON:0000988!4.89e-12!3;UBERON:0002619!5.64e-12!22;UBERON:0002298!1.05e-11!8;UBERON:0004121!2.78e-11!169;UBERON:0000924!7.03e-11!173;UBERON:0006601!7.03e-11!173;UBERON:0001950!1.76e-10!20;UBERON:0000956!2.06e-10!25;UBERON:0000203!2.06e-10!25;UBERON:0009663!4.90e-10!7;UBERON:0001873!1.15e-09!2;UBERON:0010122!1.15e-09!2;UBERON:0001894!1.27e-09!7;UBERON:0006222!1.27e-09!7;UBERON:0003076!9.60e-09!15;UBERON:0003057!9.60e-09!15;UBERON:0002148!1.08e-08!2;UBERON:0009662!1.08e-08!2;UBERON:0002420!8.39e-08!9;UBERON:0007245!8.39e-08!9;UBERON:0010009!8.39e-08!9;UBERON:0010011!8.39e-08!9;UBERON:0000454!8.39e-08!9;UBERON:0004733!1.02e-07!12;UBERON:0002028!1.02e-07!12;UBERON:0007277!1.02e-07!12;UBERON:0004732!4.20e-07!13;UBERON:0000025!9.28e-07!194 | |ontology_enrichment_uberon=UBERON:0001049!2.44e-33!57;UBERON:0005068!2.44e-33!57;UBERON:0006241!2.44e-33!57;UBERON:0007135!2.44e-33!57;UBERON:0002616!4.63e-29!59;UBERON:0000955!1.68e-28!69;UBERON:0006238!1.68e-28!69;UBERON:0001017!8.99e-28!82;UBERON:0002780!2.18e-26!41;UBERON:0001890!2.18e-26!41;UBERON:0006240!2.18e-26!41;UBERON:0005743!3.29e-26!86;UBERON:0003080!1.14e-25!42;UBERON:0003075!2.60e-24!86;UBERON:0007284!2.60e-24!86;UBERON:0000073!3.65e-23!94;UBERON:0001016!3.65e-23!94;UBERON:0002346!5.80e-23!90;UBERON:0002020!5.98e-22!34;UBERON:0003528!5.98e-22!34;UBERON:0007023!6.33e-22!115;UBERON:0003056!9.18e-21!61;UBERON:0001869!2.69e-20!32;UBERON:0001893!5.93e-19!34;UBERON:0000153!1.90e-18!129;UBERON:0007811!1.90e-18!129;UBERON:0000369!1.55e-17!4;UBERON:0002435!1.55e-17!4;UBERON:0000204!1.55e-17!4;UBERON:0010082!1.55e-17!4;UBERON:0002791!6.97e-17!33;UBERON:0000033!2.20e-16!123;UBERON:0002308!4.19e-16!9;UBERON:0000125!4.19e-16!9;UBERON:0005383!1.02e-13!3;UBERON:0005382!1.02e-13!3;UBERON:0000988!4.89e-12!3;UBERON:0002619!5.64e-12!22;UBERON:0002298!1.05e-11!8;UBERON:0004121!2.78e-11!169;UBERON:0000924!7.03e-11!173;UBERON:0006601!7.03e-11!173;UBERON:0001950!1.76e-10!20;UBERON:0000956!2.06e-10!25;UBERON:0000203!2.06e-10!25;UBERON:0009663!4.90e-10!7;UBERON:0001873!1.15e-09!2;UBERON:0010122!1.15e-09!2;UBERON:0001894!1.27e-09!7;UBERON:0006222!1.27e-09!7;UBERON:0003076!9.60e-09!15;UBERON:0003057!9.60e-09!15;UBERON:0002148!1.08e-08!2;UBERON:0009662!1.08e-08!2;UBERON:0002420!8.39e-08!9;UBERON:0007245!8.39e-08!9;UBERON:0010009!8.39e-08!9;UBERON:0010011!8.39e-08!9;UBERON:0000454!8.39e-08!9;UBERON:0004733!1.02e-07!12;UBERON:0002028!1.02e-07!12;UBERON:0007277!1.02e-07!12;UBERON:0004732!4.20e-07!13;UBERON:0000025!9.28e-07!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.47e-45;2!UBERON:0005058;4.47e-45;2!UBERON:0009113;4.47e-45;2!UBERON:0005383;3.59e-30;3!UBERON:0005382;3.59e-30;3!UBERON:0001874;2.93e-23;1!UBERON:0000369;6.42e-23;4!UBERON:0002435;6.42e-23;4!UBERON:0000204;6.42e-23;4!UBERON:0004177;9.90e-19;5!UBERON:0005057;9.90e-19;5!UBERON:0009663;1.49e-13;7!UBERON:0001873;2.45e-12;2!UBERON:0002420;9.23e-11;9!UBERON:0000125;9.23e-11;9!UBERON:0007245;9.23e-11;9!UBERON:0002308;9.23e-11;9!UBERON:0010009;9.23e-11;9!UBERON:0010011;9.23e-11;9!UBERON:0000454;9.23e-11;9 | |ontology_enrichment_uberon_v019=UBERON:0002370;4.47e-45;2!UBERON:0005058;4.47e-45;2!UBERON:0009113;4.47e-45;2!UBERON:0005383;3.59e-30;3!UBERON:0005382;3.59e-30;3!UBERON:0001874;2.93e-23;1!UBERON:0000369;6.42e-23;4!UBERON:0002435;6.42e-23;4!UBERON:0000204;6.42e-23;4!UBERON:0004177;9.90e-19;5!UBERON:0005057;9.90e-19;5!UBERON:0009663;1.49e-13;7!UBERON:0001873;2.45e-12;2!UBERON:0002420;9.23e-11;9!UBERON:0000125;9.23e-11;9!UBERON:0007245;9.23e-11;9!UBERON:0002308;9.23e-11;9!UBERON:0010009;9.23e-11;9!UBERON:0010011;9.23e-11;9!UBERON:0000454;9.23e-11;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,3.10e-30,3;UBERON:0005382,3.10e-30,3;UBERON:0001874,2.10e-23,1;UBERON:0002370,3.68e-23,4;UBERON:0005058,3.68e-23,4;UBERON:0009113,3.68e-23,4;UBERON:0003295,3.68e-23,4;UBERON:0005562,3.68e-23,4;UBERON:0000369,5.75e-23,4;UBERON:0002435,5.75e-23,4;UBERON:0000204,5.75e-23,4;UBERON:0010082,5.75e-23,4;UBERON:0003351,8.39e-16,6;UBERON:0004177,1.08e-13,7;UBERON:0005057,1.08e-13,7;UBERON:0009663,1.40e-13,7;UBERON:0001873,2.59e-12,2;UBERON:0010122,2.59e-12,2;UBERON:0002420,8.79e-11,9;UBERON:0000125,8.79e-11,9;UBERON:0007245,8.79e-11,9;UBERON:0002308,8.79e-11,9;UBERON:0010009,8.79e-11,9;UBERON:0010011,8.79e-11,9;UBERON:0000454,8.79e-11,9;UBERON:0000974,7.08e-10,10;UBERON:0003408,7.08e-10,10;UBERON:0001042,7.08e-10,10;UBERON:0009145,7.08e-10,10;UBERON:0006562,4.61e-09,11;UBERON:0009722,4.61e-09,11;UBERON:0007690,4.61e-09,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41463099414651,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24396869324463,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,4.78278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0.885741385813839,2.05013945663194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0.41023272848151,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0.336283722218824,0,0.455324382702595,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,2.67096502857203,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517164979309476,0,0,5.03793496720848,2.29676442894674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41463099414651,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24396869324463,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,4.78278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0.885741385813839,2.05013945663194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0.41023272848151,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0.336283722218824,0,0.455324382702595,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,2.67096502857203,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517164979309476,0,0,5.03793496720848,2.29676442894674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | ||
|short_description=p4@NMT2 | |short_description=p4@NMT2 | ||
}} | }} |
Latest revision as of 08:23, 17 September 2015
Short description: | p4@NMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NMT2_5end |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | -342bp_to_ENST00000478580_5end |
EntrezGene: | NMT2 |
HGNC: | 7858 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 3.10e-30 | 3 |
dorsal striatum | 3.10e-30 | 3 |
putamen | 2.10e-23 | 1 |
thymus | 3.68e-23 | 4 |
hemolymphoid system gland | 3.68e-23 | 4 |
thymic region | 3.68e-23 | 4 |
pharyngeal gland | 3.68e-23 | 4 |
thymus primordium | 3.68e-23 | 4 |
corpus striatum | 5.75e-23 | 4 |
striatum | 5.75e-23 | 4 |
ventral part of telencephalon | 5.75e-23 | 4 |
future corpus striatum | 5.75e-23 | 4 |
pharyngeal epithelium | 8.39e-16 | 6 |
hemopoietic organ | 1.08e-13 | 7 |
immune organ | 1.08e-13 | 7 |
telencephalic nucleus | 1.40e-13 | 7 |
caudate nucleus | 2.59e-12 | 2 |
future caudate nucleus | 2.59e-12 | 2 |
basal ganglion | 8.79e-11 | 9 |
neural nucleus | 8.79e-11 | 9 |
nuclear complex of neuraxis | 8.79e-11 | 9 |
nucleus of brain | 8.79e-11 | 9 |
aggregate regional part of brain | 8.79e-11 | 9 |
collection of basal ganglia | 8.79e-11 | 9 |
cerebral subcortex | 8.79e-11 | 9 |
neck | 7.08e-10 | 10 |
gland of gut | 7.08e-10 | 10 |
chordate pharynx | 7.08e-10 | 10 |
pharyngeal region of foregut | 7.08e-10 | 10 |
pharynx | 4.61e-09 | 11 |
entire pharyngeal arch endoderm | 4.61e-09 | 11 |
early pharyngeal endoderm | 4.61e-09 | 11 |