FFCP PHASE1:Hg19::chr2:211540478..211540490,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:211540478..211540490,+ | |||
|coexpression_cluster_id=C768 | |coexpression_cluster_id=C768 | ||
|description=CAGE_peak_at_chr2:211540478..211540490,+ | |description=CAGE_peak_at_chr2:211540478..211540490,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002150!2.88e-12!3;CL:0000861!2.88e-12!3;CL:0000181!1.32e-07!12;CL:0000417!1.32e-07!12;CL:0000668!1.32e-07!12;CL:0000414!1.32e-07!12;CL:0000412!1.32e-07!12;CL:0000182!1.32e-07!12 | |ontology_enrichment_celltype=CL:0002150!2.88e-12!3;CL:0000861!2.88e-12!3;CL:0000181!1.32e-07!12;CL:0000417!1.32e-07!12;CL:0000668!1.32e-07!12;CL:0000414!1.32e-07!12;CL:0000412!1.32e-07!12;CL:0000182!1.32e-07!12 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.98e-36;29 | |ontology_enrichment_development_v019=UBERON:0008947;6.98e-36;29 | ||
|ontology_enrichment_disease=DOID:305!5.04e-13!106;DOID:0050687!3.53e-10!143 | |ontology_enrichment_disease=DOID:305!5.04e-13!106;DOID:0050687!3.53e-10!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,2.46e-11,106;DOID:0050687,4.25e-08,143 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001737;1.06e-92;9!UBERON:0001557;1.06e-92;9!UBERON:0000072;3.05e-25;37!UBERON:0000065;2.51e-20;44!UBERON:0001004;1.03e-08;65!UBERON:0002107;6.17e-07;19!UBERON:0006925;6.17e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.06e-92;9!UBERON:0001557;1.06e-92;9!UBERON:0000072;3.05e-25;37!UBERON:0000065;2.51e-20;44!UBERON:0001004;1.03e-08;65!UBERON:0002107;6.17e-07;19!UBERON:0006925;6.17e-07;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,8.38e-93,9;UBERON:0001557,1.01e-43,19;UBERON:0008947,3.37e-27,38;UBERON:0003258,3.37e-27,38;UBERON:0000072,7.84e-22,47;UBERON:0001041,1.28e-20,87;UBERON:0000065,6.86e-19,54;UBERON:0004921,2.16e-17,118;UBERON:0001007,6.62e-14,145;UBERON:0001555,6.62e-14,145;UBERON:0007026,6.62e-14,145;UBERON:0001004,1.54e-13,74;UBERON:0004119,1.80e-12,160;UBERON:0000925,1.80e-12,160;UBERON:0006595,1.80e-12,160;UBERON:0001048,1.41e-10,160;UBERON:0011216,6.12e-10,223;UBERON:0002107,5.75e-07,19;UBERON:0006925,5.75e-07,19;UBERON:0008836,5.75e-07,19 | |||
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| ||
|short_description=p@chr2:211540478..211540490,+ | |short_description=p@chr2:211540478..211540490,+ | ||
}} | }} |
Latest revision as of 05:45, 29 July 2015
Short description: | p@chr2:211540478..211540490, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:211540478..211540490, + |
Coexpression cluster: | C768_Hepatocyte_liver_cervical_Hep2_epitheloid_large_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 8.38e-93 | 9 |
upper respiratory tract | 1.01e-43 | 19 |
respiratory primordium | 3.37e-27 | 38 |
endoderm of foregut | 3.37e-27 | 38 |
segment of respiratory tract | 7.84e-22 | 47 |
foregut | 1.28e-20 | 87 |
respiratory tract | 6.86e-19 | 54 |
subdivision of digestive tract | 2.16e-17 | 118 |
digestive system | 6.62e-14 | 145 |
digestive tract | 6.62e-14 | 145 |
primitive gut | 6.62e-14 | 145 |
respiratory system | 1.54e-13 | 74 |
endoderm-derived structure | 1.80e-12 | 160 |
endoderm | 1.80e-12 | 160 |
presumptive endoderm | 1.80e-12 | 160 |
primordium | 1.41e-10 | 160 |
organ system subdivision | 6.12e-10 | 223 |
liver | 5.75e-07 | 19 |
digestive gland | 5.75e-07 | 19 |
liver bud | 5.75e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.46e-11 | 106 |
cell type cancer | 4.25e-08 | 143 |