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MacroAPE 1083:AAGACTACCA,motif544: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;672.111;74.679;28.908;27.302!2;686.565;12.045;41.756;62.634!3;75.482;101.178;575.751;50.589!4;639.991;48.983;85.921;28.105!5;115.632;592.614...")
 
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789-110H6;0.066315!10828-111C9;0.117666!10788-110H5;0.735071!10792-110H9;0.488865!10765-110E9;0.151306!10829-111D1;0.255044!10830-111D2;0.679074!10831-111D3;0.569724!10832-111D4;0.494387!10833-111D5;0.116154!10764-110E8;0.569832!10770-110F5;0.35007!10399-106A3;0.221251!10400-106A4;0.932604!10405-106A9;0.95702!10834-111D6;0.93871!10835-111D7;0.642234!10836-111D8;0.222306!10837-111D9;0.656308!10699-109G6;0.462271!10802-111A1;0.498483!10796-110I4;0.713093!10010-101C1;0.592857!10810-111A9;0.644309!10421-106C7;0.256501!10708-109H6;0.960264!12235-129G3;0.558222!12236-129G4;0.816264!12237-129G5;0.929677!10167-103B5;0.485361!10151-102I7;0.423697!10428-106D5;0.544568!10795-110I3;0.281318!10805-111A4;0.513297!10052-101G7;0.505342!10189-103D9;0.734169!10589-108D4;0.975709!10425-106D2;0.587681!10427-106D4;0.805637!10702-109G9;0.510443!10432-106D9;0.134301!10496-107C1;0.875361!10718-109I7;0.793069!10011-101C2;0.41425!10053-101G8;0.612688!10686-109F2;0.0472933!10084-102B3;0.0428999!10012-101C3;0.224467!10085-102B4;0.383403!10482-107A5;0.169567!10419-106C5;0.505874!10080-102A8;0.344165!10760-110E4;0.997486!10709-109H7;0.394861!10710-109H8;0.347259!10703-109H1;0.433372!10719-109I8;0.742023!10642-109A3;0.479285!10177-103C6;0.474428!10164-103B2;0.524067!10173-103C2;0.52142!10166-103B4;0.197356!10083-102B2;0.323677!10188-103D8;0.192168!10552-107I3;0.263174!10553-107I4;0.414371!10013-101C4;0.959823!10536-107G5;0.521707!10618-108G6;0.187456!10423-106C9;0.783928!10785-110H2;0.492738!12238-129G6;0.515827!12239-129G7;0.980849!12240-129G8;0.764658!10416-106C2;0.832667!10801-110I9;0.504591!10766-110F1;0.368408!10824-111C5;0.871787!10825-111C6;0.507663!10826-111C7;0.422989!10454-106G4;0.506152!10409-106B4;0.663811!10638-108I8;0.575853!10636-108I6;0.795082!10513-107D9;0.367692!10420-106C6;0.846625!10082-102B1;0.336825!10014-101C5;0.52829!10070-101I7;0.595384!10452-106G2;0.775861!10453-106G3;0.349975!10449-106F8;0.412283!10042-101F6;0.493529!10069-101I6;0.796957!10193-103E4;0.548241!10631-108I1;0.593996!10438-106E6;0.63437!10488-107B2;0.753836!10196-103E7;0.603086!10071-101I8;0.701402!10071-101I8;0.97778!10041-101F5;0.23885!10451-106G1;0.596152!10450-106F9;0.445252!10604-108F1;0.407421!10605-108F2;0.463817!10606-108F3;0.98778!10603-108E9;0.962602!10497-107C2;0.871436!10448-106F7;0.617603!10643-109A4;0.431898!10426-106D3;0.499343!10431-106D8;0.415983!10197-103E8;0.919587!10443-106F2;0.758887!10815-111B5;0.375356!10816-111B6;0.429624!10817-111B7;0.416019!10015-101C6;0.47869!10410-106B5;0.26478!10054-101G9;0.394228!10758-110E2;0.794282!10711-109H9;0.370617!10040-101F4;0.270782!10470-106I2;0.349379!10415-106C1;0.471867!10198-103E9;0.213242!10614-108G2;0.610102!10612-108F9;0.103093!10549-107H9;0.480613!10615-108G3;0.983303!10487-107B1;0.527987!10433-106E1;0.667729!10688-109F4;0.409716!10444-106F3;0.938457!10444-106F3;0.348088!10485-107A8;0.394852!10413-106B8;0.673328!10175-103C4;0.249222!10161-103A8;0.74664!12131-128D7;0.964657!10624-108H3;0.356109!10712-109I1;0.146107!10205-103F7;0.0121969!10206-103F8;0.146254!10207-103F9;0.104615!10050-101G5;0.271056!10051-101G6;0.251845!10016-101C7;0.0794206!10046-101G1;0.0392453!10778-110G4;0.0745396!10633-108I3;0.224888!10818-111B8;0.270304!10819-111B9;0.835652!10820-111C1;0.880226!10484-107A7;0.928554!10808-111A7;0.783336!10169-103B7;0.855183!10153-102I9;0.548426!13425-144D5;0.555809!13433-144E4;0.758083!13437-144E8;0.979396!11904-125F5;0.829264!11905-125F6;0.676395!10039-101F3;0.918334!10791-110H8;0.338595!10017-101C8;0.271799!10045-101F9;0.594894!10509-107D5;0.261833!10839-111E2;0.704792!10692-109F8;0.379546!10079-102A7;0.446108!10078-102A6;0.0427366!10721-110A1;0.0672188!10569-108B2;0.953784!10570-108B3;0.593208!10571-108B4;0.167215!10647-109A8;0.366226!10752-110D5;0.0280528!10782-110G8;0.486345!10726-110A6;0.409462!10018-101C9;0.321781!10086-102B5;0.181563!10182-103D2;0.932107!10165-103B3;0.649509!10499-107C4;0.854224!10408-106B3;0.300414!10019-101D1;0.552924!10068-101I5;0.53314!10075-102A3;0.942366!10077-102A5;0.460343!10727-110A7;0.645211!10775-110G1;0.909379!10412-106B7;0.739005!12231-129F8;0.654676!12232-129F9;0.645658!12233-129G1;0.468494!12234-129G2;0.639639!10414-106B9;0.548943!10170-103B8;0.483534!10183-103D3;0.309111!10150-102I6;0.458322!10174-103C3;0.447973!10155-103A2;0.574747!10038-101F2;0.642008!10838-111E1;0.492113!10759-110E3;0.0140727!10514-107E1;0.856417!10465-106H6;0.606358!10691-109F7;0.719572!10843-111E6;0.919797!10844-111E7;0.40611!11747-123G1;0.0445988!11748-123G2;0.0156516!11749-123G3;0.0192648!11750-123G4;0.271738!11751-123G5;0.123938!11840-124H4;0.0613794!11752-123G6;0.0613581!11753-123G7;0.199051!11754-123G8;0.258396!11755-123G9;0.103292!11756-123H1;0.0209341!11833-124G6;0.0201476!11760-123H5;0.137198!11836-124G9;0.038362!11758-123H3;0.783877!11835-124G8;0.145118!11762-123H7;0.51392!11838-124H2;0.0135865!11757-123H2;0.378129!11759-123H4;0.0787855!11761-123H6;0.0884355!11842-124H6;0.0145275!11837-124H1;0.25918!10568-108B1;0.136199!13230-141I8;0.627074!13231-141I9;0.042031!10696-109G3;0.0427107!10493-107B7;0.89055!10494-107B8;0.891272!10850-111F4;0.098197!10851-111F5;0.570555!10852-111F6;0.0103146!10853-111F7;0.23852!10854-111F8;0.695761!10855-111F9;0.534651!10856-111G1;0.917357!10847-111F1;0.00933981!10846-111E9;0.719066!10848-111F2;0.490461!10845-111E8;0.227089!10857-111G2;0.865569!10858-111G3;0.403909!10156-103A3;0.708475!11901-125F2;0.55024!11902-125F3;0.658517!11903-125F4;0.264362!10689-109F5;0.343806!10648-109A9;0.474463!10784-110H1;0.218975!10744-110C6;0.943133!10772-110F7;0.0554488!10474-106I6;0.489123!10600-108E6;0.695705!10684-109E9;0.216789!12226-129F3;0.0382334!12227-129F4;0.537571!10508-107D4;0.965088!10539-107G8;0.236369!10607-108F4;0.0518059!10555-107I6;0.645744!10774-110F9;0.160804!10637-108I7;0.573381!10663-109C6;0.809381!10728-110A8;0.686029!10729-110A9;0.934173!10430-106D7;0.164726!10730-110B1;0.573235!10813-111B3;0.0307886!10812-111B2;0.28395!10037-101F1;0.188944!10172-103C1;0.322423!10163-103B1;0.917202!10076-102A4;0.731056!10073-102A1;0.242634!10036-101E9;0.167951!10195-103E6;0.227192!10277-104E7;0.374927!10434-106E2;0.846062!10550-107I1;0.22812!10545-107H5;0.751641!10544-107H4;0.0785619!10704-109H2;0.922467!10510-107D6;0.0615391!10558-107I9;0.50491!10020-101D2;0.675534!10732-110B3;0.441378!10049-101G4;0.181058!10698-109G5;0.999665!10437-106E5;0.585365!10417-106C3;0.330533!10035-101E8;0.715493!10171-103B9;0.310501!10157-103A4;0.373992!10034-101E7;0.533271!10072-101I9;0.29356!10199-103F1;0.199527!10200-103F2;0.950816!10697-109G4;0.512354!10723-110A3;0.490582!10179-103C8;0.34923!10160-103A7;0.219757!10180-103C9;0.537766!10162-103A9;0.689239!10021-101D3;0.919468!10840-111E3;0.790306!10706-109H4;0.196714!10033-101E6;0.192873!10032-101E5;0.784958!10490-107B4;0.234015!10439-106E7;0.822338!10022-101D4;0.792135!10176-103C5;0.662712!10469-106I1;0.567528!10067-101I4;0.311431!10411-106B6;0.922516!10471-106I3;0.20787!10030-101E3;0.919399!10475-106I7;0.407629!10787-110H4;0.607135!10477-106I9;0.53928!10695-109G2;0.156524!11771-123I7;0.328173!11772-123I8;0.366276!11773-123I9;0.546396!10093-102C3;0.853928!10442-106F1;0.467677!10442-106F1;0.20668!10201-103F3;0.401435!10639-108I9;0.927987!11843-124H7;0.349075!11841-124H5;0.876206!10693-109F9;0.926334!10436-106E4;0.84786!10483-107A6;0.839359!10282-104F3;0.645126!10023-101D5;0.422727!10066-101I3;0.816133!10065-101I2;0.775395!10800-110I8;0.43721!10610-108F7;0.0519272!10841-111E4;0.237496!10541-107H1;0.535059!10842-111E5;0.433865!10562-108A4;0.214511!10024-101D6;0.311787!10064-101I1;0.431634!10609-108F6;0.564643!10048-101G3;0.434269!10781-110G7;0.191951!10181-103D1;0.0984674!10159-103A6;0.673739!10056-101H2;0.75251!10737-110B8;0.567584!10025-101D7;0.0980506!10044-101F8;0.808995!10424-106D1;0.61138!10463-106H4;0.540619!10616-108G4;0.648093!10486-107A9;0.493732!10062-101H8;0.561666!10202-103F4;0.843622!10158-103A5;0.792325!10441-106E9;0.898554!10031-101E4;0.604189!10063-101H9;0.18847!10063-101H9;0.242009!11763-123H8;0.645479!11765-123I1;0.106913!11768-123I4;0.0277364!10807-111A6;0.0462943!10790-110H7;0.423066!10798-110I6;0.0846153!10786-110H3;0.34015!10591-108D6;0.855942!10593-108D8;0.59427!10590-108D5;0.825792!10026-101D8;0.69248!10096-102C6;0.876943!10168-103B6;0.221436!10154-103A1;0.50163!10209-103G2;0.759037!10061-101H7;0.504684!10027-101D9;0.743312!10043-101F7;0.317051!10783-110G9;0.693189!10028-101E1;0.446404!10060-101H6;0.49736!10203-103F5;0.643149!10059-101H5;0.290109!10047-101G2;0.475113!10029-101E2;0.953982!10058-101H4;0.677292!10418-106C4;0.89229!10492-107B6;0.669582!10694-109G1;0.836051!10797-110I5;0.21844!10057-101H3;0.905334!10100-102D1;0.260916!10055-101H1;0.616949!10204-103F6;0.813922!10191-103E2;0.657179!10563-108A5;0.93666
|name=AAGACTACCA,motif544,CNhs12641,T:803.0(24.83%),B:12552.7(16.71%),P:1e-31
|name=AAGACTACCA,motif544,CNhs12641,T:803.0(24.83%),B:12552.7(16.71%),P:1e-31
|tomtom_result=Lag1#MA0193.1;-4;0.00564286;2.686;1;6;AAGACTACCA;CTACCAA;+!GCR1#MA0304.1;-2;0.0124087;5.90653;1;8;AAGACTACCA;GGCTTCCA;-!FZF1#MA0298.1;-4;0.0144716;6.8885;1;6;AAGACTACCA;CTATCA;+!En1#MA0027.1;1;0.0166768;7.93815;1;10;AAGACTACCA;GAACACTACTT;-
}}
}}

Latest revision as of 14:32, 7 September 2012

Full Name: AAGACTACCA,motif544,CNhs12641,T:803.0(24.83%),B:12552.7(16.71%),P:1e-31

Motif matrix
POACGT
1672.11174.67928.90827.302
2686.56512.04541.75662.634
375.482101.178575.75150.589
4639.99148.98385.92128.105
5115.632592.61452.19542.559
645.77157.01320.878679.338
7582.97869.05875.48275.482
865.043621.52243.36273.073
979.497664.88426.49932.12
10713.86738.54413.65136.938

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Lag1#MA0193.1-40.005642862.68616AAGACTACCACTACCAA+
GCR1#MA0304.1-20.01240875.9065318AAGACTACCAGGCTTCCA-
FZF1#MA0298.1-40.01447166.888516AAGACTACCACTATCA+
En1#MA0027.110.01667687.93815110AAGACTACCAGAACACTACTT-
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