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MCL coexpression mm9:134: Difference between revisions

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{{MCL_coexpression_mm9
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cap;0.0487659410724899;109624!GO:0004335;galactokinase activity;0.0487659410724899;69976!GO:0004957;prostaglandin E receptor activity;0.0487659410724899;19216!GO:0000318;protein-methionine-R-oxide reductase activity;0.0487659410724899;320183!GO:0030091;protein repair;0.0487659410724899;320183!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0487659410724899;16181!GO:0005152;interleukin-1 receptor antagonist activity;0.0487659410724899;16181!GO:0048019;receptor antagonist activity;0.0487659410724899;16181!GO:0030547;receptor inhibitor activity;0.0487659410724899;16181!GO:0006012;galactose metabolic process;0.0487659410724899;69976!GO:0008083;growth factor 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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139151649173176,0.131577193331716,0.163154637182541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962873690222088,0.986859554433292,0.925318851623215,0,0.358556276484448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0030478;actin cap;0.0487659410724899;109624!GO:0004335;galactokinase activity;0.0487659410724899;69976!GO:0004957;prostaglandin E receptor activity;0.0487659410724899;19216!GO:0000318;protein-methionine-R-oxide reductase activity;0.0487659410724899;320183!GO:0030091;protein repair;0.0487659410724899;320183!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0487659410724899;16181!GO:0005152;interleukin-1 receptor antagonist activity;0.0487659410724899;16181!GO:0048019;receptor antagonist activity;0.0487659410724899;16181!GO:0030547;receptor inhibitor activity;0.0487659410724899;16181!GO:0006012;galactose metabolic process;0.0487659410724899;69976!GO:0008083;growth factor activity;0.0487659410724899;16181,20256!
}}

Latest revision as of 14:45, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120219756..120219759,-p@chr10:120219756..120219759
-
Mm9::chr10:80811972..80811985,-p8@Hmg20b
Mm9::chr10:81027190..81027201,+p@chr10:81027190..81027201
+
Mm9::chr10:81059232..81059236,-p@chr10:81059232..81059236
-
Mm9::chr12:21218901..21218921,+p@chr12:21218901..21218921
+
Mm9::chr12:82253466..82253484,+p@chr12:82253466..82253484
+
Mm9::chr13:113836524..113836535,-p@chr13:113836524..113836535
-
Mm9::chr13:113836551..113836562,-p@chr13:113836551..113836562
-
Mm9::chr14:31694271..31694286,+p@chr14:31694271..31694286
+
Mm9::chr15:43002499..43002541,-p4@Rspo2
Mm9::chr15:43308759..43308816,+p1@Ttc35
Mm9::chr15:77426540..77426561,-p1@Apol10b
Mm9::chr15:78361517..78361546,+p@chr15:78361517..78361546
+
Mm9::chr16:23496331..23496334,-p@chr16:23496331..23496334
-
Mm9::chr16:25385975..25385989,+p@chr16:25385975..25385989
+
Mm9::chr16:25861275..25861283,+p@chr16:25861275..25861283
+
Mm9::chr17:45733606..45733615,-p@chr17:45733606..45733615
-
Mm9::chr17:45733657..45733669,-p@chr17:45733657..45733669
-
Mm9::chr17:54278109..54278116,+p@chr17:54278109..54278116
+
Mm9::chr18:39549074..39549085,-p1@ENSMUST00000135378
p1@uc008esw.1
Mm9::chr18:52718879..52718899,+p@chr18:52718879..52718899
+
Mm9::chr19:33182692..33182696,-p@chr19:33182692..33182696
-
Mm9::chr2:118655758..118655763,+p@chr2:118655758..118655763
+
Mm9::chr2:125719081..125719104,+p@chr2:125719081..125719104
+
Mm9::chr2:142663946..142663971,-p@chr2:142663946..142663971
-
Mm9::chr2:24176735..24176743,+p@chr2:24176735..24176743
+
Mm9::chr2:24192234..24192242,+p7@Il1rn
Mm9::chr2:24192366..24192387,+p1@Il1rn
Mm9::chr2:24204090..24204094,+p@chr2:24204090..24204094
+
Mm9::chr2:24204977..24204986,+p@chr2:24204977..24204986
+
Mm9::chr2:24205044..24205051,+p@chr2:24205044..24205051
+
Mm9::chr2:24205067..24205078,+p@chr2:24205067..24205078
+
Mm9::chr2:24205136..24205150,+p@chr2:24205136..24205150
+
Mm9::chr2:24205159..24205168,+p@chr2:24205159..24205168
+
Mm9::chr2:24205820..24205823,+p@chr2:24205820..24205823
+
Mm9::chr2:30575542..30575553,-p1@ENSMUST00000134755
Mm9::chr2:33610787..33610805,-p@chr2:33610787..33610805
-
Mm9::chr3:103539776..103539792,+p@chr3:103539776..103539792
+
Mm9::chr3:86343741..86343754,+p@chr3:86343741..86343754
+
Mm9::chr3:86343806..86343829,+p@chr3:86343806..86343829
+
Mm9::chr3:90407689..90407693,+p1@S100a4
Mm9::chr5:16375985..16375996,+p@chr5:16375985..16375996
+
Mm9::chr5:16376032..16376033,+p@chr5:16376032..16376033
+
Mm9::chr5:16376042..16376056,+p@chr5:16376042..16376056
+
Mm9::chr5:16376061..16376072,+p@chr5:16376061..16376072
+
Mm9::chr5:16376073..16376081,+p@chr5:16376073..16376081
+
Mm9::chr5:34890493..34890494,+p@chr5:34890493..34890494
+
Mm9::chr6:117123510..117123523,+p@chr6:117123510..117123523
+
Mm9::chr6:117123612..117123624,+p@chr6:117123612..117123624
+
Mm9::chr6:117123632..117123653,-p@chr6:117123632..117123653
-
Mm9::chr6:117123676..117123691,+p@chr6:117123676..117123691
+
Mm9::chr6:117123707..117123720,+p@chr6:117123707..117123720
+
Mm9::chr6:117123725..117123738,+p@chr6:117123725..117123738
+
Mm9::chr6:117123744..117123749,+p@chr6:117123744..117123749
+
Mm9::chr6:117123786..117123805,+p@chr6:117123786..117123805
+
Mm9::chr6:117123816..117123834,+p@chr6:117123816..117123834
+
Mm9::chr6:117123847..117123856,+p@chr6:117123847..117123856
+
Mm9::chr6:117123936..117123947,+p@chr6:117123936..117123947
+
Mm9::chr6:117124001..117124008,+p@chr6:117124001..117124008
+
Mm9::chr6:117124014..117124032,+p@chr6:117124014..117124032
+
Mm9::chr6:117124047..117124054,+p@chr6:117124047..117124054
+
Mm9::chr6:117124062..117124072,+p@chr6:117124062..117124072
+
Mm9::chr6:117124077..117124090,+p@chr6:117124077..117124090
+
Mm9::chr6:117124131..117124144,+p@chr6:117124131..117124144
+
Mm9::chr6:117124164..117124170,+p@chr6:117124164..117124170
+
Mm9::chr6:117124210..117124225,+p@chr6:117124210..117124225
+
Mm9::chr6:117124293..117124310,-p@chr6:117124293..117124310
-
Mm9::chr6:117124311..117124330,-p@chr6:117124311..117124330
-
Mm9::chr6:117124325..117124342,+p@chr6:117124325..117124342
+
Mm9::chr6:117124370..117124381,+p@chr6:117124370..117124381
+
Mm9::chr6:117124392..117124399,+p@chr6:117124392..117124399
+
Mm9::chr6:117124544..117124553,+p@chr6:117124544..117124553
+
Mm9::chr6:117124640..117124652,+p@chr6:117124640..117124652
+
Mm9::chr6:117124673..117124680,-p@chr6:117124673..117124680
-
Mm9::chr6:117129110..117129128,-p@chr6:117129110..117129128
-
Mm9::chr6:34548327..34548334,+p14@Cald1
Mm9::chr6:52183182..52183193,-p@chr6:52183182..52183193
-
Mm9::chr6:98292637..98292650,-p2@Gm765
Mm9::chr6:98292655..98292685,-p1@Gm765
Mm9::chr6:98292722..98292728,-p3@Gm765
Mm9::chr7:51562365..51562374,-p2@Clec11a
Mm9::chr8:73030018..73030042,-p5@2810428I15Rik
Mm9::chr8:73030245..73030275,-p2@2810428I15Rik
Mm9::chr8:86190726..86190781,+p1@Ptger1
Mm9::chr9:63045166..63045202,-p@chr9:63045166..63045202
-
Mm9::chrX:163612287..163612300,-p@chrX:163612287..163612300
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030478actin cap0.0487659410724899
GO:0004335galactokinase activity0.0487659410724899
GO:0004957prostaglandin E receptor activity0.0487659410724899
GO:0000318protein-methionine-R-oxide reductase activity0.0487659410724899
GO:0030091protein repair0.0487659410724899
GO:0030353fibroblast growth factor receptor antagonist activity0.0487659410724899
GO:0005152interleukin-1 receptor antagonist activity0.0487659410724899
GO:0048019receptor antagonist activity0.0487659410724899
GO:0030547receptor inhibitor activity0.0487659410724899
GO:0006012galactose metabolic process0.0487659410724899
GO:0008083growth factor activity0.0487659410724899



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
smooth muscle tissue3.72e-373
blood vessel smooth muscle3.72e-373
arterial system smooth muscle3.72e-373
artery smooth muscle tissue3.72e-373
aorta smooth muscle tissue3.72e-373
aorta4.18e-284
artery4.18e-284
systemic artery4.18e-284
arterial blood vessel4.18e-284
systemic arterial system4.18e-284
aortic system4.18e-284
arterial system4.18e-284
vessel1.15e-225
epithelial tube open at both ends1.15e-225
blood vessel1.15e-225
vasculature1.15e-225
vascular system1.15e-225
blood vasculature1.15e-225
vascular cord1.15e-225
skeletal muscle tissue5.97e-139
striated muscle tissue5.97e-139
muscle tissue5.97e-139
multilaminar epithelium5.97e-139
epithelial vesicle5.97e-139
musculature5.97e-139
somite5.97e-139
myotome5.97e-139
presomitic mesoderm5.97e-139
presumptive segmental plate5.97e-139
dermomyotome5.97e-139
trunk paraxial mesoderm5.97e-139
musculature of body9.94e-1210
dense mesenchyme tissue9.97e-1111
paraxial mesoderm9.97e-1111
presumptive paraxial mesoderm9.97e-1111


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.66819e-05
MA0004.10.00316467
MA0006.10.0160408
MA0007.10.0521596
MA0009.10.102755
MA0014.10.000423051
MA0017.11.64234
MA0019.11.39923
MA0024.10.0841448
MA0025.10.231925
MA0027.11.49255
MA0028.10.396405
MA0029.10.94247
MA0030.10.269019
MA0031.10.0650519
MA0038.10.0162734
MA0040.10.108431
MA0041.10.00667812
MA0042.10.210369
MA0043.10.150535
MA0046.10.119462
MA0048.10.0691423
MA0050.10.0881166
MA0051.10.0798709
MA0052.10.112168
MA0055.10.966266
MA0056.10
MA0057.10.000578329
MA0058.10.000632586
MA0059.10.00589685
MA0060.10.00246037
MA0061.10.0153041
MA0063.10
MA0066.10.591537
MA0067.10.3082
MA0068.10.18165
MA0069.13.06872
MA0070.10.107835
MA0071.10.546698
MA0072.10.339402
MA0073.13.2146e-06
MA0074.10.141025
MA0076.10.378234
MA0077.12.82554
MA0078.11.50503
MA0081.11.42532
MA0083.10.45809
MA0084.11.3995
MA0087.11.88625
MA0088.10.00920418
MA0089.10
MA0090.10.0420517
MA0091.10.469482
MA0092.11.99725
MA0093.10.000187457
MA0095.10
MA0098.10
MA0100.10.0465501
MA0101.10.135826
MA0103.10.00243399
MA0105.10.173082
MA0106.10.0247194
MA0107.10.027453
MA0108.20.386172
MA0109.10
MA0111.10.116718
MA0113.10.219805
MA0114.10.40452
MA0115.10.152046
MA0116.10.0395019
MA0117.10.420115
MA0119.10.13665
MA0122.10.145392
MA0124.10.745011
MA0125.11.18198
MA0130.10
MA0131.10.0373315
MA0132.10
MA0133.10
MA0135.10.17074
MA0136.10.323806
MA0139.11.39002
MA0140.10.00915017
MA0141.10.595133
MA0142.10.473882
MA0143.11.08332
MA0144.16.36489
MA0145.10.0402197
MA0146.10.0306955
MA0147.10.00040372
MA0148.12.04293
MA0149.10.585795
MA0062.20.365868
MA0035.20.00961995
MA0039.24.72742e-06
MA0138.20.141166
MA0002.21.20215
MA0137.22.66015
MA0104.24.95895e-06
MA0047.25.65812
MA0112.20.874247
MA0065.21.03121
MA0150.10.122283
MA0151.10
MA0152.10.375117
MA0153.10.180344
MA0154.10.0226227
MA0155.10.0676768
MA0156.10.53954
MA0157.10.18689
MA0158.10
MA0159.10.384028
MA0160.10.302332
MA0161.10
MA0162.14.39756e-06
MA0163.11.46136e-05
MA0164.10.162439
MA0080.20.333045
MA0018.20.0139193
MA0099.24.07578
MA0079.24.01792e-12
MA0102.21.4956
MA0258.10.343925
MA0259.10.0160909
MA0442.10
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