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MCL coexpression mm9:1510: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.0499398580794262,0,0,0,0,0,0.0332993603101152,0,0,0,0.0137275452977348,0,0.0137262668762302,0,0,0,0,0.0127215386707905,0,0,0.11012295262419,0,0,0,0,0,0,0.0169489369166406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0102997183451384,0,0.0146370835987414,0,0.142888832638456,0.112010512284433,0.122328063424903,0.0727617026011779,0,0,0,0,0,0,0,0.511936075281586,0.56363040122948,0.445184796948402,0.044942294726204,0,0,0,0,0,0.0847227529105818,0.189253435176717,0.161126667659978,0.175278441120909,0.680762984247092,0.794848643071844,0.207185994106961,0.189761492238443,0.315222894061703,0.400081049205454,0.461668832737178,0.440697590236401,0.402961959055199,0.518126094121531,0.216586481899775,0.448483772435654,0.448243452140882,0.420641873161629,0.682260640085371,0.672486899798368,0.685773455307693,0.00634034871648942,0.0185537265050408,0,0,0,0,0,0,0.021502288375965,0,0.0200593558626996,0,0.0952596341589949,0,0,0,0.0170217829733477,0,0,0.0281741224149782,0,0.0933806252715324,0.0940158691934329,0.0874805176865012,0.0817211429900839,0.130748310031442,0.204108504903563,0.0833603213849484,0,0,0,0,0,0,0,0.218991114007956,0.202959146041238,0.0197603723217884,0,0,0,0.664037226739677,0.508163983408,0.455047215402168,0.437636746481917,0.459752992318643,0.53912888479408,0.505793089849269,0,0.0101847058588194,0,0.236161932592429,0.154168872276249,0.115376852783106,0.205396873787226,0.469625719100886,0.733697323462831,0.88336116510348,0.839151056162383,0.68149413122968,0,0.0300882399051749,0.0402669123857775,0.0344293735318062,0.0213093819849198,0.025954225366728,0.0325075382118249,0.0157663189679815,0,0,0,0,0,0.0143809696377157,0.0184560140783317,0,0,0,0,0,0,0.013203091508521,0,0,0,0,0.269869585526894,0.457604058153235,0,0,0,0.051275120101855,0.0361094598457558,0,0.0319589066210382,0.0151258593184163,0,0,0.0194747328949653,0.0157606832760691,0,0,0.016996575332051,0.0157740702445469,0,0.0093964126053438,0,0.0161001398555976,0,0,0,0,0,0,0,0.0134026417836271,0.0155868231842077,0,0,0,0,0,0,0,0,0.0274797449637444,0,0,0,0,0,0.0820795113079788,0,0.0136182458700521,0,0.0134518433834191,0,0,0,0,0,0,0,0,0,0,0,0,0.471571528386341,0.485476013018514,0,0,0.084983335307164,0.104817725401751,0.103967396320008,0.0186120738583182,0.0640189371497456,0.0216505122427232,0.0590471227906,0.147211030610341,0.165797987407097,0.632284558980975,0,0,0,0,0,0.0377577911461598,0.0229437792653656,0,0,0.0465680623920596,0.0199656947883834,0,0.02648379175308,0.0238536039263698,0,0,0.0705567514818088,0.0965738654658309,0.0316991373328604,0.124425174177255,0.10396807138939,0.0799964443723888,0.135075938481602,0.205907937832396,0,0.0166884883637216,0.0173095777215695,0,0,0.0319144232010162,0,0,0,0.507634582649068,0,0.0615819339983338,0.0147579274919735,0,0,0,0,0,0,0,0.0366276633552045,0.0870756462992771,0.0517916974636309,0.0164916034429006,0.0716837424050524,0.0404988927954572,0.013288064453587,0,0,0,0.0388302949969878,0,0,0.0553492622207717,0.139423510502966,0.11264423346754,0.0703991751637022,0.0106313975787212,0.0173227972435973,0,0.0219851961141404,0,0.0160332832211564,0,0,0,0.0157407500055755,0,0.0119648837323888,0,0.0063791468978576,0,0.0154674579414948,0,0,0.0177498243995479,0.0174132427513244,0.00746249466886896,0.0134799875703983,0,0,0.0146080808550889,0.030990443657325,0,0.56760295878893,0.572080393543469,0.571097766320301,0.456767354470161,0.325510407612909,0.352524233858017,0.420706475752278,0.351655391299076,0.33986216228676,0.374053801340391,0.150962480587641,0.109290515015425,0.199286795864235,0.229225983822839,0.195096269965239,0.192457264176766,0.19923874185886,0.213018930463397,0.160212752410637,0.135341798442794,0.145972625154048,0.242603505551162,0.154930779508714,0.207985342250476,0.175761082522184,0.217747849765486,0.203852169142583,0.178453819428828,0.19975318647882,0.165474097889206,0.184111573315229,0.239667440921742,0.176297984683775,0.168155159590813,0.289266013486778,0.179333562567019,0.302230899330556,0.12782199188533,0.221150261992094,0.0386884966894016,0.223719003600517,0.146730138918393,0.213383481948023,0.18842965670852,0.178883103212896,0.315578928055352,0.174318213883727,0.174571406151059,0.0714790665740549,0.0808016952417617,0.0458648612217138|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127160916153114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0856562580541553,0,0,0.0568996784870888,0,0,0,0,0,0,0,0.559920262766389,0.493592419892616,0.355578477054666,0,0,0,0,0,0,0.141204588184303,0.181399941482266,0.103807782330171,0.152487072037699,0.67334008360095,0.783901896513154,0.239285660405002,0.140942084123731,0.453079347071492,0.633819428689635,0.501153063455708,0.377025398968837,0.339844134169677,0.491951905476444,0.182104477852721,0.545634506877518,0.429475765992591,0.428261292319165,0.627459510724423,0.658897409399444,0.707637257335646,0,0,0,0,0,0,0,0,0,0,0,0,0.0572260417947564,0,0,0,0,0,0,0.0469568706916304,0,0.112901225419538,0.0694776635602275,0.115432590314795,0.0901223798974778,0.204903871792348,0.167422152083431,0.138933868974914,0,0,0,0,0,0,0,0.20018311764962,0.151949772756791,0,0,0,0,0.727860642262913,0.516866159673758,0.376977832582431,0.378505927175087,0.518703292570475,0.568347784343862,0.469364685009239,0,0,0,0.15255853577271,0.181981218013818,0,0.0719048733411253,0.312797819693318,0.629995598920522,0.877014071489008,0.820995962531324,0.639799528602765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31206088192539,0.387508097331867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0753613107413788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532532571064759,0.594424835578076,0,0,0,0,0,0,0,0,0,0.199895454695966,0,0.740244105377598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0.0528318955547673,0.0843392403965415,0.131836868893058,0.0712812415377886,0.174247988899791,0.281804600099495,0,0,0,0,0,0,0,0,0,0.555814155088545,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0.0445418537893845,0,0,0,0,0,0,0,0,0,0,0,0.0527554171614426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513085342652956,0.575413182873649,0.517404685814234,0.375631696029311,0.226621173458704,0.399810008829701,0.480735069848811,0.371245906776716,0.280187789078248,0.407098602473158,0.117722608900654,0.145825435924841,0.22606719364848,0.237875402198471,0.211878289366281,0.190760324464606,0.221867905942098,0.149856261570464,0.215330413983256,0.0978461107777356,0.098117166361508,0.194758206527804,0.107523539997041,0.231540100585064,0.128597245627104,0.169172763866184,0.165403796547116,0.141706336142815,0.14986111676545,0.158843797677303,0.128033729919821,0.275859125630462,0.092873634605593,0.157166310227119,0.308607773527825,0.0982434449953899,0.282087097036683,0.101427320830301,0.225056016595504,0,0.202263507572545,0.112441925220423,0.148982201447044,0.209447282040344,0.198305064902181,0.242897000144792,0.091291089277545,0.0845301845292944,0.0760168881589905,0.0865703124974023,0|gostat_on_MCL_coexpression=GO:0005332;gamma-aminobutyric acid:sodium symporter activity;0.0172527099321138;243616!GO:0015185;L-gamma-aminobutyric acid transmembrane transporter activity;0.0172527099321138;243616!GO:0008467;heparin-glucosamine 3-O-sulfotransferase activity;0.0172527099321138;319415!GO:0005283;sodium:amino acid symporter activity;0.0172527099321138;243616!GO:0005416;cation:amino acid symporter activity;0.0206998488307872;243616!GO:0008324;cation transmembrane transporter activity;0.0214356684575052;243616,70357!GO:0005328;neurotransmitter:sodium symporter activity;0.023645078476576;243616!GO:0005343;organic acid:sodium symporter activity;0.023645078476576;243616!GO:0005326;neurotransmitter transporter activity;0.023645078476576;243616!GO:0015075;ion transmembrane transporter activity;0.023645078476576;243616,70357!GO:0015179;L-amino acid transmembrane transporter activity;0.024026836959118;243616!GO:0022891;substrate-specific transmembrane transporter activity;0.0260457337476539;243616,70357!GO:0005275;amine transmembrane transporter activity;0.0278406913503091;243616!GO:0015171;amino acid transmembrane transporter activity;0.0278406913503091;243616!GO:0022857;transmembrane transporter activity;0.0278406913503091;243616,70357!GO:0015370;solute:sodium symporter activity;0.0280570260138593;243616!GO:0022892;substrate-specific transporter activity;0.0280570260138593;243616,70357!GO:0008146;sulfotransferase activity;0.0280570260138593;319415!GO:0006836;neurotransmitter transport;0.0284089374572476;243616!GO:0016782;transferase activity, transferring sulfur-containing groups;0.0284089374572476;319415!GO:0015294;solute:cation symporter activity;0.0284089374572476;243616!GO:0046943;carboxylic acid transmembrane transporter activity;0.0289219912115317;243616!GO:0005342;organic acid transmembrane transporter activity;0.0289219912115317;243616!|ontology_enrichment_celltype=CL:0000117!5.05e-18!23;CL:0000337!5.05e-18!23;CL:0000540!9.08e-12!33;CL:0000047!9.08e-12!33;CL:0000031!9.08e-12!33;CL:0000404!9.08e-12!33;CL:0000221!3.35e-09!44;CL:0000133!3.35e-09!44;CL:0002319!5.38e-09!43;CL:0000393!1.27e-08!39;CL:0000211!1.27e-08!39;CL:0000055!7.84e-07!49|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002346!1.68e-32!64;UBERON:0003075!1.68e-32!64;UBERON:0007284!1.68e-32!64;UBERON:0000073!1.72e-31!54;UBERON:0001049!1.07e-29!52;UBERON:0005068!1.07e-29!52;UBERON:0006241!1.07e-29!52;UBERON:0007135!1.07e-29!52;UBERON:0001017!1.48e-29!73;UBERON:0001016!3.55e-28!75;UBERON:0004121!6.77e-28!95;UBERON:0000924!6.77e-28!95;UBERON:0006601!6.77e-28!95;UBERON:0010371!1.06e-27!73;UBERON:0003056!1.60e-26!49;UBERON:0000955!1.07e-24!47;UBERON:0006238!1.07e-24!47;UBERON:0010314!8.54e-24!92;UBERON:0002616!1.11e-23!46;UBERON:0002020!2.14e-22!34;UBERON:0003080!1.91e-21!40;UBERON:0002780!1.85e-20!39;UBERON:0001890!1.85e-20!39;UBERON:0006240!1.85e-20!39;UBERON:0003528!1.79e-17!29;UBERON:0002791!1.79e-17!29;UBERON:0001893!1.79e-17!29;UBERON:0000956!1.36e-11!21;UBERON:0001869!1.36e-11!21;UBERON:0000203!1.36e-11!21;UBERON:0002619!9.23e-10!17;UBERON:0002021!8.74e-09!10;UBERON:0000411!8.74e-09!10;UBERON:0001950!8.74e-09!10;UBERON:0003076!1.23e-08!12;UBERON:0003057!1.23e-08!12;UBERON:0002420!3.07e-07!8;UBERON:0007245!3.07e-07!8;UBERON:0010009!3.07e-07!8;UBERON:0010011!3.07e-07!8;UBERON:0000454!3.07e-07!8;UBERON:0002240!3.18e-07!6;UBERON:0005174!3.18e-07!6;UBERON:0001137!3.18e-07!6|tfbs_overrepresentation_for_novel_motifs=0.557864,1.02681,0.529553,1.46803,0.406364,0.618805,0.715644,0.300268,0.310789,1.22306,0.668936,0.702872,0.300533,0.728641,0.424775,0,0.930881,0.397593,0.283802,0.545768,0.489529,1.4086,0.727684,0.404661,0.537749,0.757752,0.274609,0.641282,0.456327,0.645258,0.626183,1.03545,1.80782,0.704734,0.425309,0.791367,1.00043,0.699032,0.360612,1.57622,0.401916,0.631725,0.419293,0.426986,0.227872,1.44282,0.847828,0.658142,0.115788,1.16276,0.912738,0.786094,0.627649,1.18062,1.19842,0.73621,0.469329,0.689304,0.26467,0.734051,1.01481,0.796017,0.323911,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,2.19087,0.827208,0.46305,1.23259,0.714607,0.245132,1.30151,0.835925,0.997094,0.494135,0.308173,2.1819,0.794502,0.293164,1.1148,1.99513,2.73691,1.20595,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.356133,0.3366,0.297538,1.05152,0.848095,0.590368,0.384901,1.03517,1.16282,0.913356,0.91226,0.631253,0.97421,0.653843,0.499439,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.328405,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,1.06895,1.14546,0.595426,1.3055,0.750642,1.43666,0.143464,0.566955,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,1.39694,1.05179,0.651755,0.826123,1.18223,0.343194,0.749664,1.26545,0.787153,0.438007,0.555203,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,1.76812,0.701187,0.191104|tfbs_overrepresentation_jaspar=MA0003.1;0.6678,MA0004.1;0.603793,MA0006.1;0.419915,MA0007.1;0.587678,MA0009.1;1.06266,MA0014.1;1.59137,MA0017.1;0.449113,MA0019.1;0.874061,MA0024.1;1.01759,MA0025.1;1.30092,MA0027.1;2.72141,MA0028.1;0.43138,MA0029.1;0.995171,MA0030.1;1.00195,MA0031.1;0.965177,MA0038.1;0.757669,MA0040.1;1.07552,MA0041.1;0.522007,MA0042.1;0.507715,MA0043.1;1.1618,MA0046.1;1.09955,MA0048.1;0.205696,MA0050.1;0.645342,MA0051.1;0.767098,MA0052.1;1.08379,MA0055.1;1.01283,MA0056.1;0,MA0057.1;1.06992,MA0058.1;0.50032,MA0059.1;0.513699,MA0060.1;0.330907,MA0061.1;0.955135,MA0063.1;0,MA0066.1;0.746072,MA0067.1;1.41352,MA0068.1;0.573319,MA0069.1;1.08414,MA0070.1;1.07418,MA0071.1;0.644448,MA0072.1;2.41915,MA0073.1;9.28829,MA0074.1;0.708108,MA0076.1;0.470037,MA0077.1;1.04318,MA0078.1;0.801834,MA0081.1;0.53877,MA0083.1;1.16099,MA0084.1;1.74401,MA0087.1;1.11687,MA0088.1;2.0536,MA0089.1;0,MA0090.1;0.566938,MA0091.1;0.617887,MA0092.1;0.567278,MA0093.1;0.440484,MA0095.1;0,MA0098.1;0,MA0100.1;0.695835,MA0101.1;0.523409,MA0103.1;1.16573,MA0105.1;1.28296,MA0106.1;0.809991,MA0107.1;0.454197,MA0108.2;0.897859,MA0109.1;0,MA0111.1;0.582193,MA0113.1;0.780358,MA0114.1;0.361633,MA0115.1;1.16466,MA0116.1;1.07655,MA0117.1;1.13165,MA0119.1;0.524046,MA0122.1;1.15196,MA0124.1;1.35963,MA0125.1;1.28445,MA0130.1;0,MA0131.1;0.869325,MA0132.1;0,MA0133.1;0,MA0135.1;1.19898,MA0136.1;0.729175,MA0139.1;0.295945,MA0140.1;0.695713,MA0141.1;0.482463,MA0142.1;0.950155,MA0143.1;0.797553,MA0144.1;0.365053,MA0145.1;0.476962,MA0146.1;0.822925,MA0147.1;0.986917,MA0148.1;0.621195,MA0149.1;0.529387,MA0062.2;0.254018,MA0035.2;0.700704,MA0039.2;2.26967,MA0138.2;0.861035,MA0002.2;0.299191,MA0137.2;0.479301,MA0104.2;1.52809,MA0047.2;0.75686,MA0112.2;0.47695,MA0065.2;0.477991,MA0150.1;0.587557,MA0151.1;0,MA0152.1;0.756973,MA0153.1;1.21594,MA0154.1;2.46536,MA0155.1;0.173445,MA0156.1;0.469089,MA0157.1;0.91689,MA0158.1;0,MA0159.1;0.389847,MA0160.1;0.624415,MA0161.1;0,MA0162.1;0.898893,MA0163.1;2.36557,MA0164.1;0.729558,MA0080.2;0.455167,MA0018.2;0.739807,MA0099.2;0.854449,MA0079.2;8.01417,MA0102.2;1.79669,MA0258.1;0.346619,MA0259.1;0.366802,MA0442.1;0}}
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|gostat_on_MCL_coexpression=GO:0005332;gamma-aminobutyric acid:sodium symporter activity;0.0172527099321138;243616!GO:0015185;L-gamma-aminobutyric acid transmembrane transporter activity;0.0172527099321138;243616!GO:0008467;heparin-glucosamine 3-O-sulfotransferase activity;0.0172527099321138;319415!GO:0005283;sodium:amino acid symporter activity;0.0172527099321138;243616!GO:0005416;cation:amino acid symporter activity;0.0206998488307872;243616!GO:0008324;cation transmembrane transporter activity;0.0214356684575052;243616,70357!GO:0005328;neurotransmitter:sodium symporter activity;0.023645078476576;243616!GO:0005343;organic acid:sodium symporter activity;0.023645078476576;243616!GO:0005326;neurotransmitter transporter activity;0.023645078476576;243616!GO:0015075;ion transmembrane transporter activity;0.023645078476576;243616,70357!GO:0015179;L-amino acid transmembrane transporter activity;0.024026836959118;243616!GO:0022891;substrate-specific transmembrane transporter activity;0.0260457337476539;243616,70357!GO:0005275;amine transmembrane transporter activity;0.0278406913503091;243616!GO:0015171;amino acid transmembrane transporter activity;0.0278406913503091;243616!GO:0022857;transmembrane transporter activity;0.0278406913503091;243616,70357!GO:0015370;solute:sodium symporter activity;0.0280570260138593;243616!GO:0022892;substrate-specific transporter activity;0.0280570260138593;243616,70357!GO:0008146;sulfotransferase activity;0.0280570260138593;319415!GO:0006836;neurotransmitter transport;0.0284089374572476;243616!GO:0016782;transferase activity, transferring sulfur-containing groups;0.0284089374572476;319415!GO:0015294;solute:cation symporter activity;0.0284089374572476;243616!GO:0046943;carboxylic acid transmembrane transporter activity;0.0289219912115317;243616!GO:0005342;organic acid transmembrane transporter activity;0.0289219912115317;243616!
|ontology_enrichment_celltype=CL:0000117!5.05e-18!23;CL:0000337!5.05e-18!23;CL:0000540!9.08e-12!33;CL:0000047!9.08e-12!33;CL:0000031!9.08e-12!33;CL:0000404!9.08e-12!33;CL:0000221!3.35e-09!44;CL:0000133!3.35e-09!44;CL:0002319!5.38e-09!43;CL:0000393!1.27e-08!39;CL:0000211!1.27e-08!39;CL:0000055!7.84e-07!49
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!1.68e-32!64;UBERON:0003075!1.68e-32!64;UBERON:0007284!1.68e-32!64;UBERON:0000073!1.72e-31!54;UBERON:0001049!1.07e-29!52;UBERON:0005068!1.07e-29!52;UBERON:0006241!1.07e-29!52;UBERON:0007135!1.07e-29!52;UBERON:0001017!1.48e-29!73;UBERON:0001016!3.55e-28!75;UBERON:0004121!6.77e-28!95;UBERON:0000924!6.77e-28!95;UBERON:0006601!6.77e-28!95;UBERON:0010371!1.06e-27!73;UBERON:0003056!1.60e-26!49;UBERON:0000955!1.07e-24!47;UBERON:0006238!1.07e-24!47;UBERON:0010314!8.54e-24!92;UBERON:0002616!1.11e-23!46;UBERON:0002020!2.14e-22!34;UBERON:0003080!1.91e-21!40;UBERON:0002780!1.85e-20!39;UBERON:0001890!1.85e-20!39;UBERON:0006240!1.85e-20!39;UBERON:0003528!1.79e-17!29;UBERON:0002791!1.79e-17!29;UBERON:0001893!1.79e-17!29;UBERON:0000956!1.36e-11!21;UBERON:0001869!1.36e-11!21;UBERON:0000203!1.36e-11!21;UBERON:0002619!9.23e-10!17;UBERON:0002021!8.74e-09!10;UBERON:0000411!8.74e-09!10;UBERON:0001950!8.74e-09!10;UBERON:0003076!1.23e-08!12;UBERON:0003057!1.23e-08!12;UBERON:0002420!3.07e-07!8;UBERON:0007245!3.07e-07!8;UBERON:0010009!3.07e-07!8;UBERON:0010011!3.07e-07!8;UBERON:0000454!3.07e-07!8;UBERON:0002240!3.18e-07!6;UBERON:0005174!3.18e-07!6;UBERON:0001137!3.18e-07!6
}}

Latest revision as of 17:03, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:36226756..36226803,+p2@Hs3st5
Mm9::chr11:33743676..33743687,-p7@Kcnip1
Mm9::chr11:33743693..33743713,-p4@Kcnip1
Mm9::chr6:114081373..114081432,+p@chr6:114081373..114081432
+
Mm9::chr7:4072035..4072068,-p1@ENSMUST00000050989
p1@ENSMUST00000132560
p1@ENSMUST00000149343


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005332gamma-aminobutyric acid:sodium symporter activity0.0172527099321138
GO:0015185L-gamma-aminobutyric acid transmembrane transporter activity0.0172527099321138
GO:0008467heparin-glucosamine 3-O-sulfotransferase activity0.0172527099321138
GO:0005283sodium:amino acid symporter activity0.0172527099321138
GO:0005416cation:amino acid symporter activity0.0206998488307872
GO:0008324cation transmembrane transporter activity0.0214356684575052
GO:0005328neurotransmitter:sodium symporter activity0.023645078476576
GO:0005343organic acid:sodium symporter activity0.023645078476576
GO:0005326neurotransmitter transporter activity0.023645078476576
GO:0015075ion transmembrane transporter activity0.023645078476576
GO:0015179L-amino acid transmembrane transporter activity0.024026836959118
GO:0022891substrate-specific transmembrane transporter activity0.0260457337476539
GO:0005275amine transmembrane transporter activity0.0278406913503091
GO:0015171amino acid transmembrane transporter activity0.0278406913503091
GO:0022857transmembrane transporter activity0.0278406913503091
GO:0015370solute:sodium symporter activity0.0280570260138593
GO:0022892substrate-specific transporter activity0.0280570260138593
GO:0008146sulfotransferase activity0.0280570260138593
GO:0006836neurotransmitter transport0.0284089374572476
GO:0016782transferase activity, transferring sulfur-containing groups0.0284089374572476
GO:0015294solute:cation symporter activity0.0284089374572476
GO:0046943carboxylic acid transmembrane transporter activity0.0289219912115317
GO:0005342organic acid transmembrane transporter activity0.0289219912115317



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neurectoderm1.68e-3264
neural plate1.68e-3264
presumptive neural plate1.68e-3264
regional part of nervous system1.72e-3154
neural tube1.07e-2952
neural rod1.07e-2952
future spinal cord1.07e-2952
neural keel1.07e-2952
central nervous system1.48e-2973
nervous system3.55e-2875
ectoderm-derived structure6.77e-2895
ectoderm6.77e-2895
presumptive ectoderm6.77e-2895
ecto-epithelium1.06e-2773
pre-chordal neural plate1.60e-2649
brain1.07e-2447
future brain1.07e-2447
structure with developmental contribution from neural crest8.54e-2492
regional part of brain1.11e-2346
gray matter2.14e-2234
anterior neural tube1.91e-2140
regional part of forebrain1.85e-2039
forebrain1.85e-2039
future forebrain1.85e-2039
brain grey matter1.79e-1729
regional part of telencephalon1.79e-1729
telencephalon1.79e-1729
cerebral cortex1.36e-1121
cerebral hemisphere1.36e-1121
pallium1.36e-1121
regional part of cerebral cortex9.23e-1017
occipital lobe8.74e-0910
visual cortex8.74e-0910
neocortex8.74e-0910
posterior neural tube1.23e-0812
chordal neural plate1.23e-0812
basal ganglion3.07e-078
nuclear complex of neuraxis3.07e-078
aggregate regional part of brain3.07e-078
collection of basal ganglia3.07e-078
cerebral subcortex3.07e-078
spinal cord3.18e-076
dorsal region element3.18e-076
dorsum3.18e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.6678
MA0004.10.603793
MA0006.10.419915
MA0007.10.587678
MA0009.11.06266
MA0014.11.59137
MA0017.10.449113
MA0019.10.874061
MA0024.11.01759
MA0025.11.30092
MA0027.12.72141
MA0028.10.43138
MA0029.10.995171
MA0030.11.00195
MA0031.10.965177
MA0038.10.757669
MA0040.11.07552
MA0041.10.522007
MA0042.10.507715
MA0043.11.1618
MA0046.11.09955
MA0048.10.205696
MA0050.10.645342
MA0051.10.767098
MA0052.11.08379
MA0055.11.01283
MA0056.10
MA0057.11.06992
MA0058.10.50032
MA0059.10.513699
MA0060.10.330907
MA0061.10.955135
MA0063.10
MA0066.10.746072
MA0067.11.41352
MA0068.10.573319
MA0069.11.08414
MA0070.11.07418
MA0071.10.644448
MA0072.12.41915
MA0073.19.28829
MA0074.10.708108
MA0076.10.470037
MA0077.11.04318
MA0078.10.801834
MA0081.10.53877
MA0083.11.16099
MA0084.11.74401
MA0087.11.11687
MA0088.12.0536
MA0089.10
MA0090.10.566938
MA0091.10.617887
MA0092.10.567278
MA0093.10.440484
MA0095.10
MA0098.10
MA0100.10.695835
MA0101.10.523409
MA0103.11.16573
MA0105.11.28296
MA0106.10.809991
MA0107.10.454197
MA0108.20.897859
MA0109.10
MA0111.10.582193
MA0113.10.780358
MA0114.10.361633
MA0115.11.16466
MA0116.11.07655
MA0117.11.13165
MA0119.10.524046
MA0122.11.15196
MA0124.11.35963
MA0125.11.28445
MA0130.10
MA0131.10.869325
MA0132.10
MA0133.10
MA0135.11.19898
MA0136.10.729175
MA0139.10.295945
MA0140.10.695713
MA0141.10.482463
MA0142.10.950155
MA0143.10.797553
MA0144.10.365053
MA0145.10.476962
MA0146.10.822925
MA0147.10.986917
MA0148.10.621195
MA0149.10.529387
MA0062.20.254018
MA0035.20.700704
MA0039.22.26967
MA0138.20.861035
MA0002.20.299191
MA0137.20.479301
MA0104.21.52809
MA0047.20.75686
MA0112.20.47695
MA0065.20.477991
MA0150.10.587557
MA0151.10
MA0152.10.756973
MA0153.11.21594
MA0154.12.46536
MA0155.10.173445
MA0156.10.469089
MA0157.10.91689
MA0158.10
MA0159.10.389847
MA0160.10.624415
MA0161.10
MA0162.10.898893
MA0163.12.36557
MA0164.10.729558
MA0080.20.455167
MA0018.20.739807
MA0099.20.854449
MA0079.28.01417
MA0102.21.79669
MA0258.10.346619
MA0259.10.366802
MA0442.10
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