FFCP PHASE1:Mm9::chr5:139605616..139605706,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19085 | |EntrezGene=19085 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=P12849,Q3TY04 | |UniProt=P12849,Q3TY04 | ||
|association_with_transcript=0bp_to_NM_008923,uc009afy.2_5end | |association_with_transcript=0bp_to_NM_008923,uc009afy.2_5end | ||
|cluster_id=chr5:139605616..139605706,- | |||
|description=CAGE_peak_1_at_Prkar1b_5end | |description=CAGE_peak_1_at_Prkar1b_5end | ||
|id=chr5:139605616..139605706,- | |id=chr5:139605616..139605706,- | ||
|ontology_enrichment_celltype=CL:0000117!2.67e-13!23;CL:0000337!2.67e-13!23;CL:0002319!8.88e-13!43;CL:0000221!1.43e-12!44;CL:0000133!1.43e-12!44;CL:0000540!4.27e-12!33;CL:0000047!4.27e-12!33;CL:0000031!4.27e-12!33;CL:0000404!4.27e-12!33;CL:0000055!8.55e-09!50;CL:0000393!1.93e-08!39;CL:0000211!1.93e-08!39 | |ontology_enrichment_celltype=CL:0000117!2.67e-13!23;CL:0000337!2.67e-13!23;CL:0002319!8.88e-13!43;CL:0000221!1.43e-12!44;CL:0000133!1.43e-12!44;CL:0000540!4.27e-12!33;CL:0000047!4.27e-12!33;CL:0000031!4.27e-12!33;CL:0000404!4.27e-12!33;CL:0000055!8.55e-09!50;CL:0000393!1.93e-08!39;CL:0000211!1.93e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.45e-13,23;CL:0000337,1.45e-13,23;CL:0002319,4.96e-13,43;CL:0000221,8.06e-13,44;CL:0000133,8.06e-13,44;CL:0000540,2.47e-12,33;CL:0000047,2.47e-12,33;CL:0000031,2.47e-12,33;CL:0000404,2.47e-12,33;CL:0000393,2.75e-08,39;CL:0000211,2.75e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.43e-31!73;UBERON:0005743!8.43e-31!73;UBERON:0000073!1.41e-30!75;UBERON:0001016!1.41e-30!75;UBERON:0002346!4.36e-30!71;UBERON:0003075!4.36e-30!71;UBERON:0007284!4.36e-30!71;UBERON:0004121!3.98e-29!102;UBERON:0000924!3.98e-29!102;UBERON:0006601!3.98e-29!102;UBERON:0001049!1.59e-26!52;UBERON:0005068!1.59e-26!52;UBERON:0006241!1.59e-26!52;UBERON:0007135!1.59e-26!52;UBERON:0000955!1.92e-25!50;UBERON:0006238!1.92e-25!50;UBERON:0000033!2.46e-25!63;UBERON:0002616!7.94e-25!49;UBERON:0003056!7.63e-22!49;UBERON:0003080!1.31e-20!40;UBERON:0002780!7.36e-20!39;UBERON:0001890!7.36e-20!39;UBERON:0006240!7.36e-20!39;UBERON:0002020!1.81e-19!34;UBERON:0002791!1.08e-16!29;UBERON:0003528!1.08e-16!29;UBERON:0001893!1.08e-16!29;UBERON:0000956!6.95e-12!21;UBERON:0001869!6.95e-12!21;UBERON:0000203!6.95e-12!21;UBERON:0007811!1.87e-10!86;UBERON:0002619!5.78e-10!17;UBERON:0000153!1.07e-09!94;UBERON:0000468!2.23e-08!333;UBERON:0002021!2.46e-07!10;UBERON:0000411!2.46e-07!10;UBERON:0001950!2.46e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!8.43e-31!73;UBERON:0005743!8.43e-31!73;UBERON:0000073!1.41e-30!75;UBERON:0001016!1.41e-30!75;UBERON:0002346!4.36e-30!71;UBERON:0003075!4.36e-30!71;UBERON:0007284!4.36e-30!71;UBERON:0004121!3.98e-29!102;UBERON:0000924!3.98e-29!102;UBERON:0006601!3.98e-29!102;UBERON:0001049!1.59e-26!52;UBERON:0005068!1.59e-26!52;UBERON:0006241!1.59e-26!52;UBERON:0007135!1.59e-26!52;UBERON:0000955!1.92e-25!50;UBERON:0006238!1.92e-25!50;UBERON:0000033!2.46e-25!63;UBERON:0002616!7.94e-25!49;UBERON:0003056!7.63e-22!49;UBERON:0003080!1.31e-20!40;UBERON:0002780!7.36e-20!39;UBERON:0001890!7.36e-20!39;UBERON:0006240!7.36e-20!39;UBERON:0002020!1.81e-19!34;UBERON:0002791!1.08e-16!29;UBERON:0003528!1.08e-16!29;UBERON:0001893!1.08e-16!29;UBERON:0000956!6.95e-12!21;UBERON:0001869!6.95e-12!21;UBERON:0000203!6.95e-12!21;UBERON:0007811!1.87e-10!86;UBERON:0002619!5.78e-10!17;UBERON:0000153!1.07e-09!94;UBERON:0000468!2.23e-08!333;UBERON:0002021!2.46e-07!10;UBERON:0000411!2.46e-07!10;UBERON:0001950!2.46e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.84e-31,73;UBERON:0001016,3.11e-31,75;UBERON:0002346,1.22e-28,64;UBERON:0003075,1.22e-28,64;UBERON:0007284,1.22e-28,64;UBERON:0000073,1.84e-28,54;UBERON:0004121,4.04e-27,95;UBERON:0000924,4.04e-27,95;UBERON:0006601,4.04e-27,95;UBERON:0001049,4.34e-27,52;UBERON:0005068,4.34e-27,52;UBERON:0006241,4.34e-27,52;UBERON:0007135,4.34e-27,52;UBERON:0000955,6.71e-24,47;UBERON:0006238,6.71e-24,47;UBERON:0002616,2.79e-23,46;UBERON:0010371,3.60e-23,73;UBERON:0003056,2.66e-22,49;UBERON:0003080,4.88e-21,40;UBERON:0002780,2.85e-20,39;UBERON:0001890,2.85e-20,39;UBERON:0006240,2.85e-20,39;UBERON:0002020,7.14e-20,34;UBERON:0010314,1.10e-19,92;UBERON:0003528,4.95e-17,29;UBERON:0002791,4.95e-17,29;UBERON:0001893,4.95e-17,29;UBERON:0000956,4.07e-12,21;UBERON:0001869,4.07e-12,21;UBERON:0000203,4.07e-12,21;UBERON:0002619,3.74e-10,17;UBERON:0002021,1.82e-07,10;UBERON:0000411,1.82e-07,10;UBERON:0001950,1.82e-07,10 | |||
|phase1_expression=6.56610273129655,0,0,0,0,1.00727563147134,0.700837921786577,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0,0,0,0,37.5040909566218,0,0,0,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,7.04152209913235,6.5407546914134,14.0599156950062,11.0825042472342,7.69925318939494,7.18762821824858,0,0,0,0.257259436035947,1.71920063963254,2.06268836910977,75.46403990063,69.8268092639083,90.6378907013836,17.2810711355257,8.89294796111139,6.74924787961049,1.97773272513395,2.1314403448383,10.1864037576258,14.9845139075406,28.9294018340653,32.4014251996058,27.1319200143283,117.116903605559,105.575162574871,39.5645281464302,34.9835969216563,42.284064184061,93.5984988494804,150.415684264351,161.901286052081,85.066655585975,106.217154222398,75.5324387307302,197.661563292978,173.330883889757,188.858634252137,68.0592032444172,91.260247392225,80.3381611507046,4.39211921332468,8.16172849153284,0.869593466105033,0,0,0.539703191637817,0,0,9.12888730856387,0,0,0,4.50698943285378,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,6.50848114398642,1.03575153458869,29.3915435348353,9.36820764537134,8.52503339273995,15.4512383161559,10.8520301197888,12.6995803706561,12.3153259503082,2.71914464507811,2.02439099687876,0,2.75003644910596,0.220841518460394,2.42437626567611,1.86391761218122,57.6778170112748,59.4828647350212,2.55457055208591,0,0,0,207.909407493894,115.747652513112,92.7329118592939,215.889805678807,199.458056717658,170.17840849428,148.612996970066,8.86002465497752,1.99051152976149,0,8.62811609134543,4.42409506073193,10.8053989083732,7.92273371143537,10.7000420663358,14.2876648217788,11.1458936647819,14.7111707558774,18.6266426932091,0.431135985865684,3.40390944302075,5.27853372491847,6.79506770525482,6.11703948296315,4.87553033131033,4.32142486456681,4.57778813682534,0,0,0,2.07125772535502,2.81431271977315,3.24111710629827,2.13070262026689,1.37734962223183,2.77680803197281,1.62773761325285,2.41446061259657,1.40118410840603,1.15191894939436,0.985004784474571,0.56748166682099,0.584799949701329,1.09775057645525,0.402619256281115,129.118028418374,67.8141395579484,0.660837565967596,0.793351699990633,4.05247676016945,7.66381017139447,6.31450560478257,4.43703754171354,4.00280478920767,7.22857379227725,2.84717436926707,3.62337700392824,4.27269854960458,4.37704238490532,4.67913809085888,2.69645822596266,2.80979464837102,1.99141273254367,3.98302592001472,5.1411830674378,1.1270773567308,4.68398054044223,7.37019451236978,6.24208797023835,4.61626721007078,2.50937251565324,2.04098346193787,2.22114895059241,0,1.50160595144485,0.786235980452812,0.899448449539415,0.202860121388503,0.241177159752417,0.50925170356284,0,0.162135226775035,0,0,0.372140947668503,0,0,0,0.482443521363367,11.8242041706627,5.30575952957357,3.58522948172457,4.58311731593008,4.92849521405854,5.19269398069629,7.61739650835244,9.75668239288994,5.51723004371669,5.3151525515706,4.78364305972461,7.53771247692395,6.73471429276993,8.24499633914616,0,0,0,1.10374698521893,176.926750166547,176.051953261489,0,3.02965112645248,5.99465616890888,8.19921363022941,10.5557464889071,3.82350076724083,4.90157082981267,3.11384183867716,7.69140333182299,9.64444331107329,11.8586333383957,93.5045030787459,7.2389443456217,11.9303954457061,9.28455668315384,10.2281476242972,0,8.01176099311439,8.16273603804828,5.09233715340925,7.97315110778086,5.53383266299069,5.16856586336442,8.72480950746013,4.27796854061666,4.42451461110142,2.10837217149998,4.12542172992747,59.2364914011591,5.94201610303324,9.18446654857557,10.7168517515796,12.0591358876746,17.8368817602071,21.0622746370715,28.9241701658869,0.469343416127421,1.27099242518292,5.73373834942901,0.8244312647074,1.61464426695906,1.86970067277283,1.3130957840345,1.14898629821543,3.20628920292836,165.584794695385,0.512612642393558,7.22354037871279,3.33350149265481,0.188368457004691,0.27338845544205,0.228778173206523,0,0.279902904647316,0.276399947608848,1.90934123603023,5.69404788446044,6.50622294805916,5.72428306355547,7.10900206449194,4.36725127492355,6.74321731924104,3.71940550764012,3.40282724579238,2.07383957266869,3.72803587852155,0,2.8408143748356,6.12196414691261,6.02798683866548,8.39538852605252,7.7719817725758,7.62822051197401,3.3853140059427,1.67774951081137,0,1.15212002503146,0.316011120628178,6.68993210457542,2.87590680061516,1.16928740680016,0.716106782669926,1.39076948346885,0.961563596159751,0.147689527174577,0.302899349844443,0.381034033274999,0.100826185136841,0,0,0,1.13365191807606,7.32553646134413,1.88399098879899,4.53288464183012,6.56844619709447,2.064507229963,6.04400360081975,1.71494703263253,2.00628841614145,123.115901690521,127.510090512488,119.162266795395,92.2851589185602,150.033071829771,139.747871017095,163.355445056097,138.248609389836,143.193001239009,157.916895084305,4.77421798887213,9.97562183502578,13.8294220660849,10.2104821168684,16.1402135223546,15.6266982182512,13.3348036680969,11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|phase1_expression=6.56610273129655,0,0,0,0,1.00727563147134,0.700837921786577,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0,0,0,0,37.5040909566218,0,0,0,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,7.04152209913235,6.5407546914134,14.0599156950062,11.0825042472342,7.69925318939494,7.18762821824858,0,0,0,0.257259436035947,1.71920063963254,2.06268836910977,75.46403990063,69.8268092639083,90.6378907013836,17.2810711355257,8.89294796111139,6.74924787961049,1.97773272513395,2.1314403448383,10.1864037576258,14.9845139075406,28.9294018340653,32.4014251996058,27.1319200143283,117.116903605559,105.575162574871,39.5645281464302,34.9835969216563,42.284064184061,93.5984988494804,150.415684264351,161.901286052081,85.066655585975,106.217154222398,75.5324387307302,197.661563292978,173.330883889757,188.858634252137,68.0592032444172,91.260247392225,80.3381611507046,4.39211921332468,8.16172849153284,0.869593466105033,0,0,0.539703191637817,0,0,9.12888730856387,0,0,0,4.50698943285378,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,6.50848114398642,1.03575153458869,29.3915435348353,9.36820764537134,8.52503339273995,15.4512383161559,10.8520301197888,12.6995803706561,12.3153259503082,2.71914464507811,2.02439099687876,0,2.75003644910596,0.220841518460394,2.42437626567611,1.86391761218122,57.6778170112748,59.4828647350212,2.55457055208591,0,0,0,207.909407493894,115.747652513112,92.7329118592939,215.889805678807,199.458056717658,170.17840849428,148.612996970066,8.86002465497752,1.99051152976149,0,8.62811609134543,4.42409506073193,10.8053989083732,7.92273371143537,10.7000420663358,14.2876648217788,11.1458936647819,14.7111707558774,18.6266426932091,0.431135985865684,3.40390944302075,5.27853372491847,6.79506770525482,6.11703948296315,4.87553033131033,4.32142486456681,4.57778813682534,0,0,0,2.07125772535502,2.81431271977315,3.24111710629827,2.13070262026689,1.37734962223183,2.77680803197281,1.62773761325285,2.41446061259657,1.40118410840603,1.15191894939436,0.985004784474571,0.56748166682099,0.584799949701329,1.09775057645525,0.402619256281115,129.118028418374,67.8141395579484,0.660837565967596,0.793351699990633,4.05247676016945,7.66381017139447,6.31450560478257,4.43703754171354,4.00280478920767,7.22857379227725,2.84717436926707,3.62337700392824,4.27269854960458,4.37704238490532,4.67913809085888,2.69645822596266,2.80979464837102,1.99141273254367,3.98302592001472,5.1411830674378,1.1270773567308,4.68398054044223,7.37019451236978,6.24208797023835,4.61626721007078,2.50937251565324,2.04098346193787,2.22114895059241,0,1.50160595144485,0.786235980452812,0.899448449539415,0.202860121388503,0.241177159752417,0.50925170356284,0,0.162135226775035,0,0,0.372140947668503,0,0,0,0.482443521363367,11.8242041706627,5.30575952957357,3.58522948172457,4.58311731593008,4.92849521405854,5.19269398069629,7.61739650835244,9.75668239288994,5.51723004371669,5.3151525515706,4.78364305972461,7.53771247692395,6.73471429276993,8.24499633914616,0,0,0,1.10374698521893,176.926750166547,176.051953261489,0,3.02965112645248,5.99465616890888,8.19921363022941,10.5557464889071,3.82350076724083,4.90157082981267,3.11384183867716,7.69140333182299,9.64444331107329,11.8586333383957,93.5045030787459,7.2389443456217,11.9303954457061,9.28455668315384,10.2281476242972,0,8.01176099311439,8.16273603804828,5.09233715340925,7.97315110778086,5.53383266299069,5.16856586336442,8.72480950746013,4.27796854061666,4.42451461110142,2.10837217149998,4.12542172992747,59.2364914011591,5.94201610303324,9.18446654857557,10.7168517515796,12.0591358876746,17.8368817602071,21.0622746370715,28.9241701658869,0.469343416127421,1.27099242518292,5.73373834942901,0.8244312647074,1.61464426695906,1.86970067277283,1.3130957840345,1.14898629821543,3.20628920292836,165.584794695385,0.512612642393558,7.22354037871279,3.33350149265481,0.188368457004691,0.27338845544205,0.228778173206523,0,0.279902904647316,0.276399947608848,1.90934123603023,5.69404788446044,6.50622294805916,5.72428306355547,7.10900206449194,4.36725127492355,6.74321731924104,3.71940550764012,3.40282724579238,2.07383957266869,3.72803587852155,0,2.8408143748356,6.12196414691261,6.02798683866548,8.39538852605252,7.7719817725758,7.62822051197401,3.3853140059427,1.67774951081137,0,1.15212002503146,0.316011120628178,6.68993210457542,2.87590680061516,1.16928740680016,0.716106782669926,1.39076948346885,0.961563596159751,0.147689527174577,0.302899349844443,0.381034033274999,0.100826185136841,0,0,0,1.13365191807606,7.32553646134413,1.88399098879899,4.53288464183012,6.56844619709447,2.064507229963,6.04400360081975,1.71494703263253,2.00628841614145,123.115901690521,127.510090512488,119.162266795395,92.2851589185602,150.033071829771,139.747871017095,163.355445056097,138.248609389836,143.193001239009,157.916895084305,4.77421798887213,9.97562183502578,13.8294220660849,10.2104821168684,16.1402135223546,15.6266982182512,13.3348036680969,11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| ||
|short_description=p1@Prkar1b | |short_description=p1@Prkar1b | ||
}} | }} |
Latest revision as of 15:41, 25 September 2015
Short description: | p1@Prkar1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prkar1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_008923, uc009afy.2_5end |
EntrezGene: | Prkar1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.45e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.45e-13 | 23 |
neural cell | 4.96e-13 | 43 |
ectodermal cell | 8.06e-13 | 44 |
neurectodermal cell | 8.06e-13 | 44 |
neuron | 2.47e-12 | 33 |
neuronal stem cell | 2.47e-12 | 33 |
neuroblast | 2.47e-12 | 33 |
electrically signaling cell | 2.47e-12 | 33 |
electrically responsive cell | 2.75e-08 | 39 |
electrically active cell | 2.75e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.84e-31 | 73 |
nervous system | 3.11e-31 | 75 |
neurectoderm | 1.22e-28 | 64 |
neural plate | 1.22e-28 | 64 |
presumptive neural plate | 1.22e-28 | 64 |
regional part of nervous system | 1.84e-28 | 54 |
ectoderm-derived structure | 4.04e-27 | 95 |
ectoderm | 4.04e-27 | 95 |
presumptive ectoderm | 4.04e-27 | 95 |
neural tube | 4.34e-27 | 52 |
neural rod | 4.34e-27 | 52 |
future spinal cord | 4.34e-27 | 52 |
neural keel | 4.34e-27 | 52 |
brain | 6.71e-24 | 47 |
future brain | 6.71e-24 | 47 |
regional part of brain | 2.79e-23 | 46 |
ecto-epithelium | 3.60e-23 | 73 |
pre-chordal neural plate | 2.66e-22 | 49 |
anterior neural tube | 4.88e-21 | 40 |
regional part of forebrain | 2.85e-20 | 39 |
forebrain | 2.85e-20 | 39 |
future forebrain | 2.85e-20 | 39 |
gray matter | 7.14e-20 | 34 |
structure with developmental contribution from neural crest | 1.10e-19 | 92 |
brain grey matter | 4.95e-17 | 29 |
regional part of telencephalon | 4.95e-17 | 29 |
telencephalon | 4.95e-17 | 29 |
cerebral cortex | 4.07e-12 | 21 |
cerebral hemisphere | 4.07e-12 | 21 |
pallium | 4.07e-12 | 21 |
regional part of cerebral cortex | 3.74e-10 | 17 |
occipital lobe | 1.82e-07 | 10 |
visual cortex | 1.82e-07 | 10 |
neocortex | 1.82e-07 | 10 |