FFCP PHASE1:Mm9::chr2:73730676..73730692,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100047997,11909 | |EntrezGene=100047997,11909 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1107 | |MCL_coexpression_id=1107 | ||
|TSSclassifier=NA | |||
|UniProt=P16951,A2AQF2,Q543G2,Q640L6,Q68FE3,Q8CBR9,Q8BN75 | |UniProt=P16951,A2AQF2,Q543G2,Q640L6,Q68FE3,Q8CBR9,Q8BN75 | ||
|association_with_transcript=0bp_to_ENSMUST00000100009,ENSMUST00000112007,ENSMUST00000125159,ENSMUST00000141050,ENSMUST00000156455,ENSMUST00000165933,NM_001025093,NM_009715,uc008kde.1,uc008kdf.1,uc008kdg.1,uc008kdh.1,uc008kdi.1,uc008kdj.1,uc008kdk.1,uc008kdl.1_5end | |association_with_transcript=0bp_to_ENSMUST00000100009,ENSMUST00000112007,ENSMUST00000125159,ENSMUST00000141050,ENSMUST00000156455,ENSMUST00000165933,NM_001025093,NM_009715,uc008kde.1,uc008kdf.1,uc008kdg.1,uc008kdh.1,uc008kdi.1,uc008kdj.1,uc008kdk.1,uc008kdl.1_5end | ||
|cluster_id=chr2:73730676..73730692,- | |||
|description=CAGE_peak_1_at_Atf2_5end,CAGE_peak_1_at_LOC100047997_5end | |description=CAGE_peak_1_at_Atf2_5end,CAGE_peak_1_at_LOC100047997_5end | ||
|id=chr2:73730676..73730692,- | |id=chr2:73730676..73730692,- | ||
Latest revision as of 23:15, 26 September 2015
| Short description: | p1@Atf2, p1@LOC100047997 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Atf2_5end, CAGE_peak_1_at_LOC100047997_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1107 |
| Association with transcript: | 0bp_to_ENSMUST00000100009, ENSMUST00000112007, ENSMUST00000125159, ENSMUST00000141050, ENSMUST00000156455, ENSMUST00000165933, NM_001025093, NM_009715, uc008kde.1, uc008kdf.1, uc008kdg.1, uc008kdh.1, uc008kdi.1, uc008kdj.1, uc008kdk.1, uc008kdl.1_5end |
| EntrezGene: | 100047997,11909 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| pre-chordal neural plate | 6.49e-11 | 49 |
| neurectoderm | 2.87e-10 | 64 |
| neural plate | 2.87e-10 | 64 |
| presumptive neural plate | 2.87e-10 | 64 |
| regional part of nervous system | 4.76e-10 | 54 |
| brain | 7.51e-10 | 47 |
| future brain | 7.51e-10 | 47 |
| regional part of brain | 2.18e-09 | 46 |
| neural tube | 2.56e-09 | 52 |
| neural rod | 2.56e-09 | 52 |
| future spinal cord | 2.56e-09 | 52 |
| neural keel | 2.56e-09 | 52 |
| anterior neural tube | 2.78e-09 | 40 |
| ecto-epithelium | 7.14e-09 | 73 |
| regional part of forebrain | 9.04e-09 | 39 |
| forebrain | 9.04e-09 | 39 |
| future forebrain | 9.04e-09 | 39 |
| brain grey matter | 7.79e-08 | 29 |
| regional part of telencephalon | 7.79e-08 | 29 |
| telencephalon | 7.79e-08 | 29 |
| occipital lobe | 9.89e-08 | 10 |
| visual cortex | 9.89e-08 | 10 |
| neocortex | 9.89e-08 | 10 |
| gray matter | 2.80e-07 | 34 |
| central nervous system | 3.09e-07 | 73 |
| ectoderm-derived structure | 4.66e-07 | 95 |
| ectoderm | 4.66e-07 | 95 |
| presumptive ectoderm | 4.66e-07 | 95 |
