FFCP PHASE1:Hg19::chr3:383640..383650,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:383640..383650,+
|short_description=p@chr3:383640..383650,+
|description=CAGE_peak_at_chr3:383640..383650,+
|association_with_transcript=NA
|EntrezGene=NA...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:383640..383650,+ | |||
|coexpression_cluster_id=C552 | |||
|description=CAGE_peak_at_chr3:383640..383650,+ | |||
|id=chr3:383640..383650,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!4.07e-08!2;DOID:114!4.37e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:4556;1.09e-10;3!DOID:3908;6.39e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,1.09e-10,3;DOID:3908,6.39e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.17e-49!57;UBERON:0005068!1.17e-49!57;UBERON:0006241!1.17e-49!57;UBERON:0007135!1.17e-49!57;UBERON:0002616!5.10e-41!59;UBERON:0001017!1.54e-39!82;UBERON:0002780!4.82e-38!41;UBERON:0001890!4.82e-38!41;UBERON:0006240!4.82e-38!41;UBERON:0005743!2.40e-37!86;UBERON:0001869!2.60e-37!32;UBERON:0003080!5.12e-37!42;UBERON:0000955!2.74e-36!69;UBERON:0006238!2.74e-36!69;UBERON:0002619!2.48e-35!22;UBERON:0003075!3.21e-35!86;UBERON:0007284!3.21e-35!86;UBERON:0002020!5.49e-35!34;UBERON:0003528!5.49e-35!34;UBERON:0001893!7.05e-35!34;UBERON:0001950!3.41e-34!20;UBERON:0002346!2.67e-33!90;UBERON:0000073!4.50e-33!94;UBERON:0001016!4.50e-33!94;UBERON:0002791!1.56e-32!33;UBERON:0007023!6.69e-32!115;UBERON:0000956!8.76e-31!25;UBERON:0000203!8.76e-31!25;UBERON:0003056!8.02e-24!61;UBERON:0000153!4.24e-22!129;UBERON:0007811!4.24e-22!129;UBERON:0000033!6.28e-22!123;UBERON:0004121!4.63e-20!169;UBERON:0000924!2.15e-19!173;UBERON:0006601!2.15e-19!173;UBERON:0000200!2.06e-14!6;UBERON:0003076!2.38e-13!15;UBERON:0003057!2.38e-13!15;UBERON:0000025!3.65e-12!194;UBERON:0002771!7.57e-12!3;UBERON:0002021!1.17e-11!5;UBERON:0001872!1.63e-11!5;UBERON:0001871!3.23e-11!7;UBERON:0000064!8.05e-10!219;UBERON:0004111!8.37e-10!241;UBERON:0004733!1.81e-09!12;UBERON:0002028!1.81e-09!12;UBERON:0007277!1.81e-09!12;UBERON:0000475!9.18e-09!365;UBERON:0004732!1.08e-08!13;UBERON:0000369!1.80e-08!4;UBERON:0002435!1.80e-08!4;UBERON:0000204!1.80e-08!4;UBERON:0010082!1.80e-08!4;UBERON:0000483!9.19e-08!309;UBERON:0000477!1.16e-07!286;UBERON:0000119!1.32e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.66e-22;20!UBERON:0002619;3.39e-20;22!UBERON:0000956;6.16e-18;25!UBERON:0000203;6.16e-18;25!UBERON:0001871;2.78e-17;6!UBERON:0002771;1.15e-15;2!UBERON:0002791;2.96e-13;32!UBERON:0001869;4.54e-13;32!UBERON:0003528;1.30e-12;34!UBERON:0002020;1.30e-12;34!UBERON:0001893;8.63e-12;34!UBERON:0002114;7.42e-11;2!UBERON:0000922;8.75e-11;49!UBERON:0002780;1.37e-07;41!UBERON:0001890;1.37e-07;41!UBERON:0001016;4.86e-07;83!UBERON:0002108;5.08e-07;4!UBERON:0002021;5.54e-07;5!UBERON:0000955;5.72e-07;68!UBERON:0001872;6.39e-07;5!UBERON:0000073;7.05e-07;53!UBERON:0002616;7.05e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,4.41e-22,20;UBERON:0002619,3.23e-20,22;UBERON:0000956,5.90e-18,25;UBERON:0000203,5.90e-18,25;UBERON:0001871,2.90e-17,6;UBERON:0002771,1.15e-15,2;UBERON:0002791,2.87e-14,32;UBERON:0001869,2.87e-14,32;UBERON:0003528,1.75e-13,34;UBERON:0002020,1.75e-13,34;UBERON:0001893,1.75e-13,34;UBERON:0002780,2.53e-11,41;UBERON:0001890,2.53e-11,41;UBERON:0003080,2.53e-11,41;UBERON:0006240,2.53e-11,41;UBERON:0002114,7.42e-11,2;UBERON:0000955,1.89e-10,68;UBERON:0006238,1.89e-10,68;UBERON:0000073,6.55e-09,53;UBERON:0002616,6.55e-09,53;UBERON:0001017,7.39e-09,81;UBERON:0001049,1.83e-08,56;UBERON:0005068,1.83e-08,56;UBERON:0006241,1.83e-08,56;UBERON:0007135,1.83e-08,56;UBERON:0001016,5.13e-08,89;UBERON:0003056,8.15e-08,61;UBERON:0002108,5.08e-07,4;UBERON:0002021,5.38e-07,5;UBERON:0001872,6.04e-07,5 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,1.02044907978036,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0.295547618953547,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,2.14250933141343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,1.43429871466276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,4.39294553647067,0.250381861413,0,0.110929051536852,0.0620964029413835,0,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0.159633859057151,0.82046545696302,2.52071696221718,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.126831620387814,1.64092442705466,0,0,0,0,0,0,0,0.227662191351298,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0.588925401344836,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,3.49080552272302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,1.02044907978036,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0.295547618953547,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,2.14250933141343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,1.43429871466276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,4.39294553647067,0.250381861413,0,0.110929051536852,0.0620964029413835,0,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0.159633859057151,0.82046545696302,2.52071696221718,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.126831620387814,1.64092442705466,0,0,0,0,0,0,0,0.227662191351298,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0.588925401344836,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,3.49080552272302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:383640..383650,+ | |||
}} | }} |
Latest revision as of 20:46, 29 July 2015
Short description: | p@chr3:383640..383650, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:383640..383650, + |
Coexpression cluster: | C552_medial_temporal_occipital_parietal_duodenum_brain_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 4.41e-22 | 20 |
regional part of cerebral cortex | 3.23e-20 | 22 |
cerebral cortex | 5.90e-18 | 25 |
pallium | 5.90e-18 | 25 |
temporal lobe | 2.90e-17 | 6 |
middle temporal gyrus | 1.15e-15 | 2 |
regional part of telencephalon | 2.87e-14 | 32 |
cerebral hemisphere | 2.87e-14 | 32 |
brain grey matter | 1.75e-13 | 34 |
gray matter | 1.75e-13 | 34 |
telencephalon | 1.75e-13 | 34 |
regional part of forebrain | 2.53e-11 | 41 |
forebrain | 2.53e-11 | 41 |
anterior neural tube | 2.53e-11 | 41 |
future forebrain | 2.53e-11 | 41 |
duodenum | 7.42e-11 | 2 |
brain | 1.89e-10 | 68 |
future brain | 1.89e-10 | 68 |
regional part of nervous system | 6.55e-09 | 53 |
regional part of brain | 6.55e-09 | 53 |
central nervous system | 7.39e-09 | 81 |
neural tube | 1.83e-08 | 56 |
neural rod | 1.83e-08 | 56 |
future spinal cord | 1.83e-08 | 56 |
neural keel | 1.83e-08 | 56 |
nervous system | 5.13e-08 | 89 |
pre-chordal neural plate | 8.15e-08 | 61 |
small intestine | 5.08e-07 | 4 |
occipital lobe | 5.38e-07 | 5 |
parietal lobe | 6.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 1.09e-10 | 3 |
non-small cell lung carcinoma | 6.39e-07 | 5 |