FFCP PHASE1:Hg19::chr3:47205460..47205492,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:47205460..47205492,-
|short_description=p4@SETD2
|description=CAGE_peak_4_at_SETD2_5end
|association_with_transcript=0bp_to_ENST00000451092,ENST00000543224...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29072 | |EntrezGene=29072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18420 | |HGNC=18420 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z317,F5H340,Q9BYW2 | |UniProt=F2Z317,F5H340,Q9BYW2 | ||
|association_with_transcript=0bp_to_ENST00000451092,ENST00000543224,NM_014159,uc003cqs.2,uc003cqv.2_5end | |||
|cluster_id=chr3:47205460..47205492,- | |||
|description=CAGE_peak_4_at_SETD2_5end | |||
|id=chr3:47205460..47205492,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!8.14e-07!22;DOID:2994!8.14e-07!22;DOID:162!9.42e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.20e-07;22!DOID:2994;1.20e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.46e-07,22;DOID:2994,1.46e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.09e-13!94;UBERON:0001016!4.09e-13!94;UBERON:0001017!4.37e-13!82;UBERON:0005743!7.57e-12!86;UBERON:0000955!1.21e-11!69;UBERON:0006238!1.21e-11!69;UBERON:0007023!2.42e-09!115;UBERON:0001049!7.45e-09!57;UBERON:0005068!7.45e-09!57;UBERON:0006241!7.45e-09!57;UBERON:0007135!7.45e-09!57;UBERON:0002616!3.21e-08!59;UBERON:0003080!8.63e-08!42;UBERON:0002780!2.06e-07!41;UBERON:0001890!2.06e-07!41;UBERON:0006240!2.06e-07!41;UBERON:0000924!2.55e-07!173;UBERON:0006601!2.55e-07!173;UBERON:0004121!4.20e-07!169;UBERON:0000956!8.19e-07!25;UBERON:0000203!8.19e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.34e-09;49!UBERON:0000956;8.42e-07;25!UBERON:0000203;8.42e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.37e-14,89;UBERON:0001017,7.77e-13,81;UBERON:0000955,4.48e-12,68;UBERON:0006238,4.48e-12,68;UBERON:0011216,4.72e-11,223;UBERON:0000073,6.08e-09,53;UBERON:0002616,6.08e-09,53;UBERON:0001049,7.22e-09,56;UBERON:0005068,7.22e-09,56;UBERON:0006241,7.22e-09,56;UBERON:0007135,7.22e-09,56;UBERON:0007023,7.53e-09,114;UBERON:0002780,1.83e-08,41;UBERON:0001890,1.83e-08,41;UBERON:0003080,1.83e-08,41;UBERON:0006240,1.83e-08,41;UBERON:0000956,1.18e-07,25;UBERON:0000203,1.18e-07,25;UBERON:0001950,3.51e-07,20;UBERON:0003528,4.28e-07,34;UBERON:0002020,4.28e-07,34;UBERON:0001893,4.70e-07,34;UBERON:0001869,7.07e-07,32;UBERON:0002791,9.50e-07,32;UBERON:0002619,9.82e-07,22 | |||
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| ||
|short_description=p4@SETD2 | |||
}} | }} |
Latest revision as of 12:20, 18 September 2015
Short description: | p4@SETD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SETD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000451092, ENST00000543224, NM_014159, uc003cqs.2, uc003cqv.2_5end |
EntrezGene: | SETD2 |
HGNC: | 18420 |
UniProt: | F2Z317F5H340Q9BYW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 6.37e-14 | 89 |
central nervous system | 7.77e-13 | 81 |
brain | 4.48e-12 | 68 |
future brain | 4.48e-12 | 68 |
organ system subdivision | 4.72e-11 | 223 |
regional part of nervous system | 6.08e-09 | 53 |
regional part of brain | 6.08e-09 | 53 |
neural tube | 7.22e-09 | 56 |
neural rod | 7.22e-09 | 56 |
future spinal cord | 7.22e-09 | 56 |
neural keel | 7.22e-09 | 56 |
adult organism | 7.53e-09 | 114 |
regional part of forebrain | 1.83e-08 | 41 |
forebrain | 1.83e-08 | 41 |
anterior neural tube | 1.83e-08 | 41 |
future forebrain | 1.83e-08 | 41 |
cerebral cortex | 1.18e-07 | 25 |
pallium | 1.18e-07 | 25 |
neocortex | 3.51e-07 | 20 |
brain grey matter | 4.28e-07 | 34 |
gray matter | 4.28e-07 | 34 |
telencephalon | 4.70e-07 | 34 |
cerebral hemisphere | 7.07e-07 | 32 |
regional part of telencephalon | 9.50e-07 | 32 |
regional part of cerebral cortex | 9.82e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.46e-07 | 22 |
germ cell cancer | 1.46e-07 | 22 |