FFCP PHASE1:Hg19::chr3:52537839..52537870,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:52537839..52537870,+
|short_description=p@chr3:52537839..52537870,+
|description=CAGE_peak_at_chr3:52537839..52537870,+
|association_with_transcript=NA
|E...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:52537839..52537870,+ | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_at_chr3:52537839..52537870,+ | |||
|id=chr3:52537839..52537870,+ | |||
|ontology_enrichment_celltype=CL:0000115!7.73e-21!35;CL:0000071!3.79e-18!18;CL:0002546!3.79e-18!18;CL:0002139!3.18e-17!24;CL:0002078!2.34e-15!44;CL:0000839!3.11e-12!70;CL:0000557!5.73e-12!71;CL:0000766!7.57e-12!76;CL:0002194!9.48e-11!63;CL:0000576!9.48e-11!63;CL:0000040!9.48e-11!63;CL:0000559!9.48e-11!63;CL:0000213!1.43e-10!57;CL:0000215!1.43e-10!57;CL:0002009!3.02e-10!65;CL:0000763!7.68e-09!112;CL:0000049!7.68e-09!112;CL:1000413!1.43e-08!9;CL:0002619!2.46e-08!3;CL:0002144!6.11e-08!3;CL:0002618!8.37e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002619;7.02e-35;3!CL:0000235;7.96e-30;6!CL:0000115;1.43e-20;36!CL:0002144;9.08e-16;3!CL:0002078;2.64e-14;45!CL:0000071;4.10e-10;18!CL:0002139;1.25e-07;24!CL:0002545;6.07e-07;2!CL:0000213;8.03e-07;58!CL:0000215;8.03e-07;58!CL:0002262;9.01e-07;2!CL:1000398;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002619,7.04e-35,3;CL:0000235,1.07e-29,6;CL:0000115,4.95e-24,36;CL:0002078,5.13e-19,45;CL:0002144,1.22e-15,3;CL:0000213,1.64e-14,58;CL:0000215,1.64e-14,58;CL:0000071,4.01e-10,18;CL:0002546,4.01e-10,18;CL:0002194,1.60e-08,59;CL:0000576,1.60e-08,59;CL:0000040,1.60e-08,59;CL:0000559,1.60e-08,59;CL:0002009,3.16e-08,61;CL:0002139,1.23e-07,24;CL:0000839,1.46e-07,66;CL:0000557,1.94e-07,67;CL:0002545,6.07e-07,2;CL:0000766,6.98e-07,72;CL:0002262,8.52e-07,2;CL:1000398,8.52e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010115;2.75e-12;1!CL:0002546;4.10e-10;18!UBERON:0007297;9.01e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!3.79e-18!18;UBERON:0004638!3.79e-18!18;UBERON:0004852!3.79e-18!18;UBERON:0007023!6.81e-17!115;UBERON:0000487!3.30e-14!22;UBERON:0002405!3.82e-12!115;UBERON:0006914!4.32e-12!25;UBERON:0003081!4.94e-12!216;UBERON:0002193!1.48e-11!112;UBERON:0002390!1.90e-10!102;UBERON:0003061!1.90e-10!102;UBERON:0002371!6.72e-10!80;UBERON:0001474!8.98e-09!86;UBERON:0003915!1.43e-08!9;UBERON:0004700!1.43e-08!9;UBERON:0001917!1.43e-08!9;UBERON:0001915!6.11e-08!3;UBERON:0001982!6.11e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;9.08e-16;3!UBERON:0001915;9.08e-16;3!UBERON:0001982;9.08e-16;3!UBERON:0002363;2.75e-12;1!UBERON:0000029;2.75e-12;1!UBERON:0001301;2.75e-12;1!UBERON:0004638;4.10e-10;18!UBERON:0001986;4.10e-10;18!UBERON:0004852;4.10e-10;18!UBERON:0000487;2.61e-08;22!UBERON:0006914;2.48e-07;25!UBERON:0005800;6.07e-07;2!UBERON:0001515;6.07e-07;2!UBERON:0002360;9.01e-07;2!UBERON:0001281;9.01e-07;2!UBERON:0003497;9.01e-07;2!UBERON:0003909;9.01e-07;2!UBERON:0000094;9.01e-07;2!UBERON:0003835;9.01e-07;2!UBERON:0010743;9.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,1.22e-15,3;UBERON:0001915,1.22e-15,3;UBERON:0001982,1.22e-15,3;UBERON:0002363,1.96e-12,1;UBERON:0007645,1.96e-12,1;UBERON:0007647,1.96e-12,1;UBERON:0010115,1.96e-12,1;UBERON:0000029,2.20e-12,1;UBERON:0001301,3.08e-12,1;UBERON:0003081,3.57e-10,203;UBERON:0004638,4.01e-10,18;UBERON:0001986,4.01e-10,18;UBERON:0004852,4.01e-10,18;UBERON:0003887,8.54e-09,12;UBERON:0002405,1.75e-08,93;UBERON:0000487,2.57e-08,22;UBERON:0006914,2.44e-07,25;UBERON:0002193,3.71e-07,108;UBERON:0005800,6.07e-07,2;UBERON:0001515,6.07e-07,2;UBERON:0002360,7.61e-07,2;UBERON:0000094,7.61e-07,2;UBERON:0010743,7.61e-07,2;UBERON:0001281,8.52e-07,2;UBERON:0003497,8.52e-07,2;UBERON:0003909,8.52e-07,2;UBERON:0003835,8.52e-07,2;UBERON:0000926,8.62e-07,315;UBERON:0004120,8.62e-07,315;UBERON:0006603,8.62e-07,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0.802177789880567,0,15.6740831967947,8.09734165047449,10.3030227053675,0.436194716338694,0,0,0.464858073811369,0,0,0,0,0,0,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0.918251677112708,0.320929027076094,0,0.989553900560148,0.199463657621632,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0,1.6507082516404,0.208994966536811,0,0,0,2.01414658554573,0.760272105718513,1.22031028774085,0.735326160691737,2.43042584364528,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0.462985512576611,0,0,0,1.23108503043699,0,0.297262324577456,0,0,0,0,0,0,0,0.176096868026452,0,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,1.00451418286425,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.383010740264733,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,1.51647791108371,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.427149650270779,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,1.2217909337381,0.322289439867886,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0,0,0.103432995861895,0.426467963801962,0,0,0.124149428591716,0,0.0636471582781649,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0.802177789880567,0,15.6740831967947,8.09734165047449,10.3030227053675,0.436194716338694,0,0,0.464858073811369,0,0,0,0,0,0,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0.918251677112708,0.320929027076094,0,0.989553900560148,0.199463657621632,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0,1.6507082516404,0.208994966536811,0,0,0,2.01414658554573,0.760272105718513,1.22031028774085,0.735326160691737,2.43042584364528,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0.462985512576611,0,0,0,1.23108503043699,0,0.297262324577456,0,0,0,0,0,0,0,0.176096868026452,0,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,1.00451418286425,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.383010740264733,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,1.51647791108371,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.427149650270779,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,1.2217909337381,0.322289439867886,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0,0,0.103432995861895,0.426467963801962,0,0,0.124149428591716,0,0.0636471582781649,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr3:52537839..52537870,+ | |||
}} | }} |
Latest revision as of 22:28, 29 July 2015
Short description: | p@chr3:52537839..52537870, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:52537839..52537870, + |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult endothelial progenitor cell | 7.04e-35 | 3 |
macrophage | 1.07e-29 | 6 |
endothelial cell | 4.95e-24 | 36 |
meso-epithelial cell | 5.13e-19 | 45 |
capillary endothelial cell | 1.22e-15 | 3 |
lining cell | 1.64e-14 | 58 |
barrier cell | 1.64e-14 | 58 |
blood vessel endothelial cell | 4.01e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.01e-10 | 18 |
monopoietic cell | 1.60e-08 | 59 |
monocyte | 1.60e-08 | 59 |
monoblast | 1.60e-08 | 59 |
promonocyte | 1.60e-08 | 59 |
macrophage dendritic cell progenitor | 3.16e-08 | 61 |
endothelial cell of vascular tree | 1.23e-07 | 24 |
myeloid lineage restricted progenitor cell | 1.46e-07 | 66 |
granulocyte monocyte progenitor cell | 1.94e-07 | 67 |
thoracic aorta endothelial cell | 6.07e-07 | 2 |
myeloid leukocyte | 6.98e-07 | 72 |
endothelial cell of sinusoid | 8.52e-07 | 2 |
endothelial cell of hepatic sinusoid | 8.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 1.22e-15 | 3 |
endothelium of capillary | 1.22e-15 | 3 |
capillary | 1.22e-15 | 3 |
dura mater | 1.96e-12 | 1 |
future meninx | 1.96e-12 | 1 |
ectomeninx | 1.96e-12 | 1 |
future dura mater | 1.96e-12 | 1 |
lymph node | 2.20e-12 | 1 |
epididymis | 3.08e-12 | 1 |
lateral plate mesoderm | 3.57e-10 | 203 |
blood vessel endothelium | 4.01e-10 | 18 |
endothelium | 4.01e-10 | 18 |
cardiovascular system endothelium | 4.01e-10 | 18 |
intraembryonic coelom | 8.54e-09 | 12 |
immune system | 1.75e-08 | 93 |
simple squamous epithelium | 2.57e-08 | 22 |
squamous epithelium | 2.44e-07 | 25 |
hemolymphoid system | 3.71e-07 | 108 |
segment of aorta | 6.07e-07 | 2 |
thoracic aorta | 6.07e-07 | 2 |
meninx | 7.61e-07 | 2 |
membrane organ | 7.61e-07 | 2 |
meningeal cluster | 7.61e-07 | 2 |
hepatic sinusoid | 8.52e-07 | 2 |
abdomen blood vessel | 8.52e-07 | 2 |
sinusoid | 8.52e-07 | 2 |
abdominal segment blood vessel | 8.52e-07 | 2 |
mesoderm | 8.62e-07 | 315 |
mesoderm-derived structure | 8.62e-07 | 315 |
presumptive mesoderm | 8.62e-07 | 315 |