FFCP PHASE1:Hg19::chr4:151936865..151936891,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:151936865..151936891,-
|short_description=p1@LRBA
|description=CAGE_peak_1_at_LRBA_5end
|association_with_transcript=0bp_to_ENST00000510841,ENST00000535741...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=987 | |EntrezGene=987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1742 | |HGNC=1742 | ||
|TSSclassifier=strong | |||
|UniProt=F5H1X8 | |UniProt=F5H1X8 | ||
|association_with_transcript=0bp_to_ENST00000510841,ENST00000535741,uc010ipj.2_5end | |||
|cluster_id=chr4:151936865..151936891,- | |||
|description=CAGE_peak_1_at_LRBA_5end | |||
|id=chr4:151936865..151936891,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.02e-33!115;UBERON:0001049!6.39e-19!57;UBERON:0005068!6.39e-19!57;UBERON:0006241!6.39e-19!57;UBERON:0007135!6.39e-19!57;UBERON:0002616!2.80e-18!59;UBERON:0000955!4.39e-16!69;UBERON:0006238!4.39e-16!69;UBERON:0000073!2.11e-15!94;UBERON:0001016!2.11e-15!94;UBERON:0002780!3.07e-15!41;UBERON:0001890!3.07e-15!41;UBERON:0006240!3.07e-15!41;UBERON:0001017!3.23e-15!82;UBERON:0003080!3.69e-15!42;UBERON:0005743!7.26e-15!86;UBERON:0003075!9.47e-13!86;UBERON:0007284!9.47e-13!86;UBERON:0002346!3.22e-12!90;UBERON:0001893!1.34e-11!34;UBERON:0002020!1.72e-11!34;UBERON:0003528!1.72e-11!34;UBERON:0002791!2.71e-11!33;UBERON:0001869!1.12e-10!32;UBERON:0000153!2.80e-10!129;UBERON:0007811!2.80e-10!129;UBERON:0003056!5.80e-10!61;UBERON:0000033!5.89e-09!123;UBERON:0000956!3.13e-08!25;UBERON:0000203!3.13e-08!25;UBERON:0002619!3.15e-08!22;UBERON:0001950!1.96e-07!20;UBERON:0004121!3.27e-07!169;UBERON:0000924!4.64e-07!173;UBERON:0006601!4.64e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.93e-11;41!UBERON:0001890;2.93e-11;41!UBERON:0000073;9.81e-11;53!UBERON:0002616;9.81e-11;53!UBERON:0001893;4.62e-10;34!UBERON:0003528;4.72e-10;34!UBERON:0002020;4.72e-10;34!UBERON:0007023;5.01e-10;114!UBERON:0002791;5.40e-10;32!UBERON:0001869;9.37e-10;32!UBERON:0002619;2.31e-08;22!UBERON:0000956;2.32e-08;25!UBERON:0000203;2.32e-08;25!UBERON:0001016;3.66e-08;83!UBERON:0001017;4.36e-08;75!UBERON:0001950;1.44e-07;20!UBERON:0000955;1.74e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.74e-33,114;UBERON:0001049,5.53e-19,56;UBERON:0005068,5.53e-19,56;UBERON:0006241,5.53e-19,56;UBERON:0007135,5.53e-19,56;UBERON:0000073,1.80e-17,53;UBERON:0002616,1.80e-17,53;UBERON:0000955,4.32e-16,68;UBERON:0006238,4.32e-16,68;UBERON:0001016,1.07e-15,89;UBERON:0002780,3.07e-15,41;UBERON:0001890,3.07e-15,41;UBERON:0003080,3.07e-15,41;UBERON:0006240,3.07e-15,41;UBERON:0001017,3.36e-15,81;UBERON:0003075,4.85e-14,82;UBERON:0007284,4.85e-14,82;UBERON:0002346,1.99e-13,86;UBERON:0001893,1.34e-11,34;UBERON:0003528,1.72e-11,34;UBERON:0002020,1.72e-11,34;UBERON:0002791,7.53e-11,32;UBERON:0001869,1.12e-10,32;UBERON:0003056,2.03e-10,61;UBERON:0010371,4.11e-09,104;UBERON:0000956,3.13e-08,25;UBERON:0000203,3.13e-08,25;UBERON:0002619,3.15e-08,22;UBERON:0010314,9.40e-08,132;UBERON:0004121,1.56e-07,171;UBERON:0000924,1.56e-07,171;UBERON:0006601,1.56e-07,171;UBERON:0001950,1.96e-07,20 | |||
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| ||
|short_description=p1@LRBA | |||
}} | }} |
Latest revision as of 02:20, 16 September 2015
Short description: | p1@LRBA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRBA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000510841, ENST00000535741, uc010ipj.2_5end |
EntrezGene: | LRBA |
HGNC: | 1742 |
UniProt: | F5H1X8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.74e-33 | 114 |
neural tube | 5.53e-19 | 56 |
neural rod | 5.53e-19 | 56 |
future spinal cord | 5.53e-19 | 56 |
neural keel | 5.53e-19 | 56 |
regional part of nervous system | 1.80e-17 | 53 |
regional part of brain | 1.80e-17 | 53 |
brain | 4.32e-16 | 68 |
future brain | 4.32e-16 | 68 |
nervous system | 1.07e-15 | 89 |
regional part of forebrain | 3.07e-15 | 41 |
forebrain | 3.07e-15 | 41 |
anterior neural tube | 3.07e-15 | 41 |
future forebrain | 3.07e-15 | 41 |
central nervous system | 3.36e-15 | 81 |
neural plate | 4.85e-14 | 82 |
presumptive neural plate | 4.85e-14 | 82 |
neurectoderm | 1.99e-13 | 86 |
telencephalon | 1.34e-11 | 34 |
brain grey matter | 1.72e-11 | 34 |
gray matter | 1.72e-11 | 34 |
regional part of telencephalon | 7.53e-11 | 32 |
cerebral hemisphere | 1.12e-10 | 32 |
pre-chordal neural plate | 2.03e-10 | 61 |
ecto-epithelium | 4.11e-09 | 104 |
cerebral cortex | 3.13e-08 | 25 |
pallium | 3.13e-08 | 25 |
regional part of cerebral cortex | 3.15e-08 | 22 |
structure with developmental contribution from neural crest | 9.40e-08 | 132 |
ectoderm-derived structure | 1.56e-07 | 171 |
ectoderm | 1.56e-07 | 171 |
presumptive ectoderm | 1.56e-07 | 171 |
neocortex | 1.96e-07 | 20 |