FFCP PHASE1:Hg19::chr4:56502455..56502471,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:56502455..56502471,-
|short_description=p1@NMU
|description=CAGE_peak_1_at_NMU_5end
|association_with_transcript=0bp_to_ENST00000264218,ENST00000541393,NM_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10874 | |EntrezGene=10874 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7859 | |HGNC=7859 | ||
|TSSclassifier=strong | |||
|UniProt=P48645,F5H6L4 | |UniProt=P48645,F5H6L4 | ||
|association_with_transcript=0bp_to_ENST00000264218,ENST00000541393,NM_006681,uc003hbc.2_5end | |||
|cluster_id=chr4:56502455..56502471,- | |||
|description=CAGE_peak_1_at_NMU_5end | |||
|id=chr4:56502455..56502471,- | |||
|ontology_enrichment_celltype=CL:0000066!1.61e-23!254;CL:0002319!1.23e-07!25;CL:0002076!1.79e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.37e-08;17!CL:0002518;2.37e-08;17!CL:0000128;8.89e-07;7!CL:0000126;8.89e-07;7!CL:0000127;8.89e-07;7!CL:1000449;8.96e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.26e-28,253;CL:1000497,1.90e-08,17;CL:0002518,1.90e-08,17;CL:1000449,7.33e-07,15;CL:0000128,9.91e-07,7;CL:0000126,9.91e-07,7;CL:0000127,9.91e-07,7;CL:0002453,9.91e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.71e-08;29 | |||
|ontology_enrichment_disease=DOID:305!6.03e-25!106;DOID:14566!1.54e-22!239;DOID:162!2.41e-22!235;DOID:0050687!1.47e-20!143;DOID:1749!4.50e-08!14;DOID:299!5.79e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.09e-09;14!DOID:305;3.31e-08;106!DOID:299;9.60e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.02e-27,106;DOID:162,1.74e-25,235;DOID:14566,3.67e-24,239;DOID:0050687,1.21e-20,143;DOID:1749,9.29e-10,14;DOID:0050686,7.05e-08,137;DOID:299,1.22e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000064!3.48e-12!219;UBERON:0000063!1.07e-09!97;UBERON:0000924!3.59e-09!173;UBERON:0006601!3.59e-09!173;UBERON:0004121!4.06e-09!169;UBERON:0000481!7.49e-09!347;UBERON:0001004!1.42e-08!72;UBERON:0001007!2.45e-08!155;UBERON:0001555!2.45e-08!155;UBERON:0007026!2.45e-08!155;UBERON:0000072!3.03e-08!46;UBERON:0008947!3.72e-08!38;UBERON:0003258!3.72e-08!38;UBERON:0000153!4.47e-08!129;UBERON:0007811!4.47e-08!129;UBERON:0000489!7.79e-08!32;UBERON:0000065!9.60e-08!53;UBERON:0000464!1.09e-07!104;UBERON:0000033!1.49e-07!123;UBERON:0004119!2.01e-07!169;UBERON:0000925!2.01e-07!169;UBERON:0006595!2.01e-07!169;UBERON:0005177!2.07e-07!107;UBERON:0000062!2.67e-07!511;UBERON:0002113!7.10e-07!27;UBERON:0003918!7.10e-07!27;UBERON:0005095!7.10e-07!27;UBERON:0007687!7.10e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;1.67e-08;29!UBERON:0002113;2.75e-08;24!UBERON:0011143;2.75e-08;24!UBERON:0006554;2.91e-07;30!UBERON:0001008;2.91e-07;30!UBERON:0001737;4.99e-07;9!UBERON:0001557;4.99e-07;9!UBERON:0006555;8.96e-07;15!UBERON:0004819;8.96e-07;15!UBERON:0001285;8.96e-07;15!UBERON:0007684;8.96e-07;15!UBERON:0000020;9.39e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.71e-08,31;UBERON:0002113,3.30e-08,26;UBERON:0003918,3.30e-08,26;UBERON:0011143,3.30e-08,26;UBERON:0005095,3.30e-08,26;UBERON:0007687,3.30e-08,26;UBERON:0008947,1.37e-07,38;UBERON:0003258,1.37e-07,38;UBERON:0000072,3.10e-07,47;UBERON:0001007,4.22e-07,145;UBERON:0001555,4.22e-07,145;UBERON:0007026,4.22e-07,145;UBERON:0001737,5.60e-07,9;UBERON:0004211,7.33e-07,15;UBERON:0009773,7.33e-07,15;UBERON:0001231,7.33e-07,15;UBERON:0001285,7.33e-07,15;UBERON:0007684,7.33e-07,15;UBERON:0004208,7.33e-07,15;UBERON:0005177,8.68e-07,101;UBERON:0001041,9.15e-07,87;UBERON:0007625,9.51e-07,11;UBERON:0001004,9.54e-07,74 | |||
|phase1_expression=0,0,0,2.00146596706261,0,0,0,0,0.261185628199839,0.737201809504527,14.653824527421,0,0.263766978228454,0.495065411840187,0.994192127183747,0,0,0,0,5.41732655537867,4.08001382488506,3.44800193625897,16.3154512664702,13.8243169323613,18.3292253808412,0,0,0,0,0,0,11.9524759182261,1.204823675113,1.84877005083394,60.1145476503141,60.4219238071542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.63813845847723,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0.260118695119756,0,0,0,0,0,0,0.453237370790265,0.383220493601921,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0.361439152384566,0,0.144846518960824,0,0,7.75185500745356,3.32594096193846,4.12823492757692,0.327447688744282,15.3004021082868,55.24688197488,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.516833518338658,0,0,0,0,0,0,0.81014194788176,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0,0,0,11.7745394078484,0.993943903390637,0.506522046658319,0,0.573673241497627,0.354668382198357,0.560677600142307,0,0,0,0.269421344139376,0.163461903113459,0.151357427644931,0.576175924479999,0.468642863667593,0,0,0,0.117434498643765,0,0,0,0.368502951935304,0,0,0,0,0,0.505008341862199,0,0.277064115484183,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0,0,0.10075209822764,0,1.73934767846967,0.818238361772504,2.58124135850103,9.51394907810844,7.81925633096763,11.0384245726042,6.21966330092223,8.07426722802011,5.47466038613745,0,0,0,0,0,5.67872640191251,4.04603256187444,5.3022426574366,6.17646247301406,5.66486554640256,5.69449485866632,7.55055325696921,5.49420102350969,3.46272441251751,0,0,1.6462960453256,0,0,0,0,0,0.368965315629341,4.28919525746314,0.548751427043128,0,2.81481122752566,3.24059558054854,0,1.03993478527958,5.77325368101093,5.68058984377876,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,1.84780341018745,3.40260233381728,2.68675568108545,4.65014301622339,4.21720947081732,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.87192013766656,0.07333828582095,0,0,0,0,0,0.514414748524284,1.41849132023278,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0,0,0.254094624222463,0,0.773288812777695,1.84267891867784,3.18969375826582,0,0,0,0,0,0.542530047399471,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0.164254312027618,0,0,0,0.601519410909855,0.828728900423067,0,0,0,1.80479845162965,1.46329140498388,1.56869953835371,5.84556898613043,2.53323909342902,3.4120015221269,0.850468526382578,1.94324324491925,1.54227252690289,1.35473218771926,1.50506932156456,7.90116446439619,2.49322802678617,3.1342465661105,3.72741790298089,6.01301537357271,10.7709052548883,6.56029291399411,2.60302715731442,0.412164046590889,0.366277859273374,0.247528499761764,0,1.95018073810956,0,0,0.924291702687866,1.22802939780904,0.689182862422653,0.214840489736547,0.290033387828457,0.255679882248303,0,0,0.384380134730212,0.638063562472921,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0.318203247925937,0,0,0,0.235624804691373,0,0,0,0.975267478179181,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0.573645408816206,0,0.35667105148125,0,0.211107635297664,0,0.379473173765715,0.349934720244983,1.44333169088268,0,0,0.0941438007767792,0,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0.106824071127473,1.92495971052672,9.3115282072792,0,0,0,1.27541018183058,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,147.704878737255,0,0,4.22961015263549,91.137443178803,0,0.36408156524854,0,1.70481688083848,0.47748896947538,0,0,0,0,0.556543525114529,0,6.96713846822378,0.19924798825107,2.21027132424918,0,22.9081848804827,0,0,23.5455080005996,0,0,0.0986434056369336,0,1.11136990144637,6.78532922266653,0.556608588971108,3.99227596002388,0.260427761085233,1.48681999993533,0,6.48622655227348,9.15313141053959,3.78220290828698,15.5134517958659,0.583209226766509,24.1338742957276,0,0,0,0,0,0.219385397153973,1.52513848926586,65.1108885781077,6.38687145581516,2.84855139617503,0,0,0,3.82801391678303,0.549585560411174,0.533034776018635,0,0,124.326338061317,339.070277907623,370.558189860528,275.395224227358,189.943486456909,346.958551914167,6.54094000036884,37.0538474521265,0.282706142867882,0.216388639742091,0,0.884575645033392,0.611030144933625,0,0,0,0.202203398942031,2.40773294189637,0,0,4.30462161650597,2.18502341580683,2.36750641709634,2.41981432097328,1.22429104652196,0,5.41164309892173,9.95406637413573,0,0,0,0,0.284609546029793,0,9.19866613176194,121.216595601585,14.4518282923468,0.17472666824203,0,0,0,0,28.5147708475953,0.0882561266915003,0.225980740780532,0.411125773940253,0.19871461170299,1.58276989889697,19.7506896562151,52.1833919837485,0.213452994739353,21.3796282252879,2.4495370916198,9.506537481771,0,0,2.23654564017779,7.54220910773745,6.93111450975432,5.96236223980299,0.203996435272644,0.57790117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| ||
|short_description=p1@NMU | |||
}} | }} |
Latest revision as of 02:00, 18 September 2015
Short description: | p1@NMU |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NMU_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000264218, ENST00000541393, NM_006681, uc003hbc.2_5end |
EntrezGene: | NMU |
HGNC: | 7859 |
UniProt: | P48645F5H6L4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.26e-28 | 253 |
kidney cell | 1.90e-08 | 17 |
kidney epithelial cell | 1.90e-08 | 17 |
epithelial cell of nephron | 7.33e-07 | 15 |
oligodendrocyte | 9.91e-07 | 7 |
macroglial cell | 9.91e-07 | 7 |
astrocyte | 9.91e-07 | 7 |
oligodendrocyte precursor cell | 9.91e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 1.71e-08 | 31 |
kidney | 3.30e-08 | 26 |
kidney mesenchyme | 3.30e-08 | 26 |
upper urinary tract | 3.30e-08 | 26 |
kidney rudiment | 3.30e-08 | 26 |
kidney field | 3.30e-08 | 26 |
respiratory primordium | 1.37e-07 | 38 |
endoderm of foregut | 1.37e-07 | 38 |
segment of respiratory tract | 3.10e-07 | 47 |
digestive system | 4.22e-07 | 145 |
digestive tract | 4.22e-07 | 145 |
primitive gut | 4.22e-07 | 145 |
larynx | 5.60e-07 | 9 |
nephron epithelium | 7.33e-07 | 15 |
renal tubule | 7.33e-07 | 15 |
nephron tubule | 7.33e-07 | 15 |
nephron | 7.33e-07 | 15 |
uriniferous tubule | 7.33e-07 | 15 |
nephrogenic mesenchyme | 7.33e-07 | 15 |
trunk region element | 8.68e-07 | 101 |
foregut | 9.15e-07 | 87 |
pigment epithelium of eye | 9.51e-07 | 11 |
respiratory system | 9.54e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.02e-27 | 106 |
cancer | 1.74e-25 | 235 |
disease of cellular proliferation | 3.67e-24 | 239 |
cell type cancer | 1.21e-20 | 143 |
squamous cell carcinoma | 9.29e-10 | 14 |
organ system cancer | 7.05e-08 | 137 |
adenocarcinoma | 1.22e-07 | 25 |