FFCP PHASE1:Hg19::chr4:77082222..77082245,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:77082222..77082245,-
|short_description=p6@SCARB2
|description=CAGE_peak_6_at_SCARB2_5end
|association_with_transcript=-321bp_to_AK056001_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=950 | |EntrezGene=950 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1665 | |HGNC=1665 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-321bp_to_AK056001_5end | |||
|cluster_id=chr4:77082222..77082245,- | |||
|description=CAGE_peak_6_at_SCARB2_5end | |||
|id=chr4:77082222..77082245,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!6.74e-10!659;UBERON:0001049!1.24e-09!57;UBERON:0005068!1.24e-09!57;UBERON:0006241!1.24e-09!57;UBERON:0007135!1.24e-09!57;UBERON:0000062!5.09e-09!511;UBERON:0003080!1.01e-08!42;UBERON:0005743!1.18e-08!86;UBERON:0002780!1.46e-08!41;UBERON:0001890!1.46e-08!41;UBERON:0006240!1.46e-08!41;UBERON:0001017!2.24e-08!82;UBERON:0003075!3.30e-08!86;UBERON:0007284!3.30e-08!86;UBERON:0000480!3.55e-08!626;UBERON:0002616!3.97e-08!59;UBERON:0000467!4.32e-08!625;UBERON:0002346!4.84e-08!90;UBERON:0000955!6.23e-08!69;UBERON:0006238!6.23e-08!69;UBERON:0000033!7.14e-08!123;UBERON:0003056!1.31e-07!61;UBERON:0004121!1.49e-07!169;UBERON:0000924!1.62e-07!173;UBERON:0006601!1.62e-07!173;UBERON:0000073!1.65e-07!94;UBERON:0001016!1.65e-07!94;UBERON:0000475!1.66e-07!365;UBERON:0002020!1.98e-07!34;UBERON:0003528!1.98e-07!34;UBERON:0000153!5.12e-07!129;UBERON:0007811!5.12e-07!129;UBERON:0002791!5.18e-07!33;UBERON:0001893!5.64e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.17e-07;41!UBERON:0001890;6.17e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003075,1.39e-10,82;UBERON:0007284,1.39e-10,82;UBERON:0002346,1.60e-10,86;UBERON:0001049,4.50e-10,56;UBERON:0005068,4.50e-10,56;UBERON:0006241,4.50e-10,56;UBERON:0007135,4.50e-10,56;UBERON:0010371,1.19e-09,104;UBERON:0000073,4.05e-09,53;UBERON:0002616,4.05e-09,53;UBERON:0002780,5.01e-09,41;UBERON:0001890,5.01e-09,41;UBERON:0003080,5.01e-09,41;UBERON:0006240,5.01e-09,41;UBERON:0003056,1.10e-08,61;UBERON:0004121,1.40e-08,171;UBERON:0000924,1.40e-08,171;UBERON:0006601,1.40e-08,171;UBERON:0001017,2.51e-08,81;UBERON:0010314,3.95e-08,132;UBERON:0000955,5.49e-08,68;UBERON:0006238,5.49e-08,68;UBERON:0003528,9.03e-08,34;UBERON:0002020,9.03e-08,34;UBERON:0001893,2.81e-07,34;UBERON:0002791,4.20e-07,32;UBERON:0001016,7.58e-07,89 | |||
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| ||
|short_description=p6@SCARB2 | |||
}} | }} |
Latest revision as of 17:29, 18 September 2015
Short description: | p6@SCARB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SCARB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -321bp_to_AK056001_5end |
EntrezGene: | SCARB2 |
HGNC: | 1665 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural plate | 1.39e-10 | 82 |
presumptive neural plate | 1.39e-10 | 82 |
neurectoderm | 1.60e-10 | 86 |
neural tube | 4.50e-10 | 56 |
neural rod | 4.50e-10 | 56 |
future spinal cord | 4.50e-10 | 56 |
neural keel | 4.50e-10 | 56 |
ecto-epithelium | 1.19e-09 | 104 |
regional part of nervous system | 4.05e-09 | 53 |
regional part of brain | 4.05e-09 | 53 |
regional part of forebrain | 5.01e-09 | 41 |
forebrain | 5.01e-09 | 41 |
anterior neural tube | 5.01e-09 | 41 |
future forebrain | 5.01e-09 | 41 |
pre-chordal neural plate | 1.10e-08 | 61 |
ectoderm-derived structure | 1.40e-08 | 171 |
ectoderm | 1.40e-08 | 171 |
presumptive ectoderm | 1.40e-08 | 171 |
central nervous system | 2.51e-08 | 81 |
structure with developmental contribution from neural crest | 3.95e-08 | 132 |
brain | 5.49e-08 | 68 |
future brain | 5.49e-08 | 68 |
brain grey matter | 9.03e-08 | 34 |
gray matter | 9.03e-08 | 34 |
telencephalon | 2.81e-07 | 34 |
regional part of telencephalon | 4.20e-07 | 32 |
nervous system | 7.58e-07 | 89 |