FFCP PHASE1:Hg19::chr12:7848400..7848403,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9573 | |EntrezGene=9573 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4218 | |HGNC=4218 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NR23 | |UniProt=Q9NR23 | ||
|association_with_transcript=-28bp_to_ENST00000329913_5end | |association_with_transcript=-28bp_to_ENST00000329913_5end | ||
|cluster_id=chr12:7848400..7848403,- | |||
|coexpression_cluster_id=C157 | |coexpression_cluster_id=C157 | ||
|description=CAGE_peak_3_at_GDF3_5end | |description=CAGE_peak_3_at_GDF3_5end |
Latest revision as of 22:57, 24 September 2015
Short description: | p3@GDF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GDF3_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | -28bp_to_ENST00000329913_5end |
EntrezGene: | GDF3 |
HGNC: | 4218 |
UniProt: | Q9NR23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@GDF3 |
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0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.30e-53 | 5 |
germ line cell | 1.30e-38 | 7 |
germ cell | 1.30e-38 | 7 |
melanocyte | 1.43e-15 | 10 |
melanoblast | 1.43e-15 | 10 |
neuron | 7.91e-12 | 6 |
neuroblast | 7.91e-12 | 6 |
electrically signaling cell | 7.91e-12 | 6 |
pigment cell | 2.62e-11 | 14 |
neuronal stem cell | 4.19e-09 | 8 |
Showing 1 to 10 of 12 entries
Ontology term | p-value | n |
---|---|---|
testis | 7.45e-34 | 8 |
male reproductive organ | 9.32e-25 | 11 |
gonad | 3.73e-13 | 21 |
indifferent external genitalia | 3.73e-13 | 21 |
indifferent gonad | 3.73e-13 | 21 |
gonad primordium | 3.73e-13 | 21 |
external genitalia | 1.43e-12 | 22 |
male organism | 1.43e-12 | 22 |
male reproductive system | 1.43e-12 | 22 |
Showing 1 to 9 of 9 entries
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.80e-19 | 22 |
germ cell cancer | 4.80e-19 | 22 |
Showing 1 to 2 of 2 entries