UBERON:0002435: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0002435 | |id=UBERON:0002435 | ||
|is_a=UBERON: | |is_a=UBERON:0011300 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=striatum | |name=striatum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000204;;UBERON:0000369;;UBERON:0002420 | |part_of=UBERON:0000204;;UBERON:0000369;;UBERON:0002420;;UBERON:0006098 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0006514 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0006514 | ||
Latest revision as of 17:32, 12 September 2014
| Name: | striatum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] | ||
| Xrefs: |
| ||
| Synonyms: |
"corpus striatum" RELATED [MA:0000891] "neostriatum" EXACT [GO:0021756, Wikipedia:Striatum] "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum] | ||
| Comments: | AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen | ||
| Alt_id: | UBERON:MA_0000891-FMA_77618 | ||
| Subset: | uberon_slim |
200px-BrainCaudatePutamen.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011300(gray matter of telencephalon) |
|---|---|
| part_of: | UBERON:0000204(ventral part of telencephalon),UBERON:0000369(corpus striatum),UBERON:0002420(basal ganglion),UBERON:0006098(basal nuclear complex) |
Children
| part of: | UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),CL:0002613 (striatum neuron),UBERON:0005382 (dorsal striatum),UBERON:0005403 (ventral striatum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
- 11646-122D8 (Mouse Neurons - striatal, donor3)
- 11723-123D4 (Mouse Neurons - striatal, donor1)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
- 11646-122D8 (Mouse Neurons - striatal, donor3)
- 11723-123D4 (Mouse Neurons - striatal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002435 (striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr18:47967428..47967437, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr12:6031299..6031315, - |
| 2.57e-195 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr2:152828264..152828299, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr2:152828264..152828299, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr18:47967428..47967437, - |
| 2.57e-195 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_e77ddbee804b5c08cb31b2b6d890004e | p@chr14:78638610..78638621, + |
| 2.57e-195 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr1:31352916..31352926, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_e77ddbee804b5c08cb31b2b6d890004e | p@chr13:112726433..112726446, + |
| 2.57e-195 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr12:6031299..6031315, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_e77ddbee804b5c08cb31b2b6d890004e | p@chr14:78638610..78638621, + |
| 2.57e-195 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_e77ddbee804b5c08cb31b2b6d890004e | p@chr1:31352916..31352926, - |
| 2.57e-195 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_e77ddbee804b5c08cb31b2b6d890004e | p@chr13:112726433..112726446, + |
| 6.72e-157 | FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_181d5d015df4ea1866b9bfc0c74d828f | p2@BC051739 |
| 6.72e-157 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr2:3853961..3853984, + |
| 6.72e-157 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_181d5d015df4ea1866b9bfc0c74d828f | p@chr10:97261874..97261887, - |
| 6.72e-157 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_181d5d015df4ea1866b9bfc0c74d828f | p@chr15:35546024..35546035, - |
| 6.72e-157 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr3:57807798..57807809, + |
| 6.72e-157 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr17:19390211..19390223, + |
| 6.72e-157 | FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_181d5d015df4ea1866b9bfc0c74d828f | p2@BC051739 |
| 6.72e-157 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr17:19390211..19390223, + |
| 6.72e-157 | FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_181d5d015df4ea1866b9bfc0c74d828f | p@chr10:97261874..97261887, - |
| 6.72e-157 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr2:3853961..3853984, + |
| 6.72e-157 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr3:57807798..57807809, + |
| 6.72e-157 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr20:9496091..9496106, + |
| 6.72e-157 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_181d5d015df4ea1866b9bfc0c74d828f | p@chr20:9496091..9496106, + |
| 6.72e-157 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_181d5d015df4ea1866b9bfc0c74d828f | p@chr15:35546024..35546035, - |
| 1.5e-156 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_1ee3adcdbf68bfd6e4b8fbc63a4f3d16 | p23@KCNAB1 |
| 1.5e-156 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_1ee3adcdbf68bfd6e4b8fbc63a4f3d16 | p23@KCNAB1 |
| 3.35e-156 | FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_db5663c280d001f644ceec308c756788 | p6@SYNDIG1L |
| 3.35e-156 | FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_db5663c280d001f644ceec308c756788 | p6@SYNDIG1L |
| 6.94e-147 | FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_bc39c24b917648d264cc8e3f4876e93d | p27@GNAL |
| 6.94e-147 | FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_bc39c24b917648d264cc8e3f4876e93d | p@chr18:47967443..47967452, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_bc39c24b917648d264cc8e3f4876e93d | p@chrX:102663083..102663098, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_bc39c24b917648d264cc8e3f4876e93d | p@chr18:47967443..47967452, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr8:115354253..115354290, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_bc39c24b917648d264cc8e3f4876e93d | p22@PRLR |
| 6.94e-147 | FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_bc39c24b917648d264cc8e3f4876e93d | p27@GNAL |
| 6.94e-147 | FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr4:71945904..71945922, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_bc39c24b917648d264cc8e3f4876e93d | p@chr11:47617035..47617045, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_bc39c24b917648d264cc8e3f4876e93d | p11@SCN8A |
| 6.94e-147 | FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr4:71945904..71945922, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_bc39c24b917648d264cc8e3f4876e93d | p11@SCN8A |
| 6.94e-147 | FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr3:63542313..63542321, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_bc39c24b917648d264cc8e3f4876e93d | p2@DGKH |
| 6.94e-147 | FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr18:54898506..54898515, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr17:7271778..7271784, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr3:63542313..63542321, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_bc39c24b917648d264cc8e3f4876e93d | p2@DGKH |
| 6.94e-147 | FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_bc39c24b917648d264cc8e3f4876e93d | p5@ENST00000514240 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_bc39c24b917648d264cc8e3f4876e93d | p@chr15:37777334..37777345, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_bc39c24b917648d264cc8e3f4876e93d | p@chr15:37777334..37777345, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_bc39c24b917648d264cc8e3f4876e93d | p@chrX:102663083..102663098, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr18:54898506..54898515, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_bc39c24b917648d264cc8e3f4876e93d | p5@ENST00000514240 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr8:115354253..115354290, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_bc39c24b917648d264cc8e3f4876e93d | p@chr11:47617035..47617045, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_bc39c24b917648d264cc8e3f4876e93d | p22@PRLR |
| 6.94e-147 | FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_bc39c24b917648d264cc8e3f4876e93d | p@chr17:7271778..7271784, + |
| 2.79e-131 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr11:26497871..26497889, + |
| 2.79e-131 | FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr2:234227370..234227385, + |
| 2.79e-131 | FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr10:97261901..97261919, - |
| 2.79e-131 | FFCP PHASE1:Hg19::chr10:97261796..97261806,-#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr10:97261796..97261806, - |
| 2.79e-131 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr11:26497871..26497889, + |
| 2.79e-131 | FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr5:121648127..121648167, - |
| 2.79e-131 | FFCP PHASE2:Hg19::chr10:97261796..97261806,-#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr10:97261796..97261806, - |
| 2.79e-131 | FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr2:234227370..234227385, + |
| 2.79e-131 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr10:97261901..97261919, - |
| 2.79e-131 | FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_2bcb86f7d59fdddfed2a45aeedc7de2a | p10@SYNPR |
| 2.79e-131 | FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_2bcb86f7d59fdddfed2a45aeedc7de2a | p@chr5:121648127..121648167, - |
| 2.79e-131 | FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_2bcb86f7d59fdddfed2a45aeedc7de2a | p10@SYNPR |
| 3.91e-131 | FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_38404cc64a613f888d78255cc237b1a3 | p9@DOCK4 |
| 3.91e-131 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_38404cc64a613f888d78255cc237b1a3 | p1@ENST00000421878 |
| 3.91e-131 | FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_38404cc64a613f888d78255cc237b1a3 | p9@DOCK4 |
| 3.91e-131 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_38404cc64a613f888d78255cc237b1a3 | p1@ENST00000421878 |
| 5.46e-131 | FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_835e734955139ad24657c898b3591978 | p8@CADM2 |
| 5.46e-131 | FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_835e734955139ad24657c898b3591978 | p8@CADM2 |
| 5.46e-131 | FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_835e734955139ad24657c898b3591978 | p1@LINC00523 |
| 5.46e-131 | FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_835e734955139ad24657c898b3591978 | p1@LINC00523 |
| 5.46e-131 | FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_835e734955139ad24657c898b3591978 | p@chr2:212989626..212989648, - |
| 5.46e-131 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_835e734955139ad24657c898b3591978 | p@chr19:1236637..1236645, - |
| 5.46e-131 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_835e734955139ad24657c898b3591978 | p@chr19:1236637..1236645, - |
| 5.46e-131 | FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_835e734955139ad24657c898b3591978 | p@chr2:212989626..212989648, - |
| 1.07e-130 | FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_805e81e57cd019a14706daa7996b8a6f | p14@ADORA2A |
| 1.07e-130 | FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_805e81e57cd019a14706daa7996b8a6f | p8@ANO3 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_805e81e57cd019a14706daa7996b8a6f | p8@ANO3 |
| 1.07e-130 | FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_805e81e57cd019a14706daa7996b8a6f | p14@ADORA2A |
| 4.07e-130 | FFCP PHASE1:Hg19::chr16:84027018..84027029,+#_f87e7d893bd48e0daae8d11b0c804980 | p@chr16:84027018..84027029, + |
| 4.07e-130 | FFCP PHASE2:Hg19::chr16:84027018..84027029,+#_f87e7d893bd48e0daae8d11b0c804980 | p@chr16:84027018..84027029, + |
| 5.62e-113 | FFCP PHASE1:Hg19::chr3:154147920..154147931,-#_fc72d900ffb2942358754cea37d7f65f | p3@GPR149 |
| 5.62e-113 | FFCP PHASE2:Hg19::chr3:154147920..154147931,-#_fc72d900ffb2942358754cea37d7f65f | p3@GPR149 |
| 5.62e-113 | FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_fc72d900ffb2942358754cea37d7f65f | p@chr13:98995904..98995913, + |
| 5.62e-113 | FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_fc72d900ffb2942358754cea37d7f65f | p@chr13:98995904..98995913, + |
| 7.5e-113 | FFCP PHASE2:Hg19::chrX:37765754..37765765,+#_0a28506f8d847025562ae8386a9a8610 | p11@ENST00000449263 |
| 7.5e-113 | FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_0a28506f8d847025562ae8386a9a8610 | p@chr11:80886203..80886231, + |
| 7.5e-113 | FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_0a28506f8d847025562ae8386a9a8610 | p@chr11:80886203..80886231, + |
| 7.5e-113 | FFCP PHASE2:Hg19::chr6:12890045..12890049,+#_0a28506f8d847025562ae8386a9a8610 | p@chr6:12890045..12890049, + |
| 7.5e-113 | FFCP PHASE1:Hg19::chrX:37765754..37765765,+#_0a28506f8d847025562ae8386a9a8610 | p11@ENST00000449263 |
| 7.5e-113 | FFCP PHASE1:Hg19::chr6:12890045..12890049,+#_0a28506f8d847025562ae8386a9a8610 | p@chr6:12890045..12890049, + |
| 1.0e-112 | FFCP PHASE1:Hg19::chr2:242171468..242171498,-#_3fc91b4cb23062dbd2bb35f0d554b885 | p@chr2:242171468..242171498, - |
| 1.0e-112 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_3fc91b4cb23062dbd2bb35f0d554b885 | p@chr2:7112752..7112770, + |
