FFCP PHASE1:Hg19::chr6:128562429..128562459,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:128562429..128562459,-
|short_description=p3@PTPRK
|description=CAGE_peak_3_at_PTPRK_5end
|association_with_transcript=0bp_to_ENST00000368205_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5796 | |EntrezGene=5796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9674 | |HGNC=9674 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000368205_5end | |||
|cluster_id=chr6:128562429..128562459,- | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_3_at_PTPRK_5end | |||
|id=chr6:128562429..128562459,- | |||
|ontology_enrichment_celltype=CL:0000945!4.59e-39!24;CL:0000826!4.59e-39!24;CL:0000236!5.80e-32!14;CL:0000542!1.13e-20!53;CL:0000051!1.13e-20!53;CL:0000838!3.86e-19!52;CL:0002087!1.07e-12!119;CL:0000738!1.08e-10!140;CL:0000842!8.10e-10!3;CL:0002031!4.87e-08!124;CL:0000224!1.87e-07!4;CL:0000037!1.94e-07!172;CL:0000566!1.94e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000236;4.28e-66;13!CL:0000945;3.56e-54;24!CL:0000542;5.02e-17;53!CL:0000226;1.31e-08;3!CL:0000842;1.31e-08;3!CL:0000817;4.34e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.66e-61,14;CL:0000945,3.43e-54,24;CL:0000826,3.43e-54,24;CL:0000838,2.61e-23,52;CL:0000542,8.26e-23,53;CL:0000051,8.26e-23,53;CL:0002087,1.71e-11,115;CL:0000738,3.44e-09,136;CL:0000226,1.44e-08,3;CL:0000842,1.44e-08,3;CL:0002031,3.07e-08,120;CL:0000037,8.50e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000051;5.02e-17;53!UBERON:0004872;2.95e-08;7!UBERON:0001045;4.34e-07;1!UBERON:0006298;4.34e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!8.63e-23!15;UBERON:0000179!8.63e-23!15;UBERON:0000463!8.63e-23!15;UBERON:0007023!1.08e-12!115;UBERON:0004177!3.84e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.98e-36;15!UBERON:0000179;1.98e-36;15!UBERON:0000463;1.98e-36;15!UBERON:0002390;1.59e-22;32!UBERON:0002193;2.55e-17;42!UBERON:0002106;4.99e-09;3!UBERON:0000029;2.03e-07;1!UBERON:0002372;3.31e-07;1!UBERON:0001961;3.31e-07;1!UBERON:0001744;3.31e-07;1!UBERON:0001042;3.31e-07;1!UBERON:0001735;3.31e-07;1!UBERON:0001154;4.34e-07;1!UBERON:0001736;4.34e-07;1!UBERON:0001153;4.34e-07;1!UBERON:0009854;4.34e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.18e-36,15;UBERON:0000179,2.18e-36,15;UBERON:0000463,2.18e-36,15;UBERON:0002106,4.99e-09,3;UBERON:0004854,4.99e-09,3;UBERON:0009034,4.99e-09,3;UBERON:0002095,4.99e-09,3;UBERON:0004782,4.99e-09,3;UBERON:0003281,4.99e-09,3;UBERON:0009664,4.99e-09,3;UBERON:0002296,4.99e-09,3;UBERON:0005602,4.99e-09,3;UBERON:0001179,4.99e-09,3;UBERON:0006293,4.99e-09,3;UBERON:0002193,1.29e-07,108;UBERON:0000029,2.09e-07,1;UBERON:0002372,3.41e-07,1;UBERON:0001961,3.41e-07,1;UBERON:0001744,3.41e-07,1;UBERON:0001735,3.41e-07,1;UBERON:0007023,3.64e-07,114;UBERON:0001154,4.08e-07,1;UBERON:0001153,4.08e-07,1;UBERON:0001045,4.08e-07,1;UBERON:0001736,4.60e-07,1;UBERON:0006298,4.60e-07,1 | |||
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| ||
|short_description=p3@PTPRK | |||
}} | }} |
Latest revision as of 15:34, 24 September 2015
Short description: | p3@PTPRK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PTPRK_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000368205_5end |
EntrezGene: | PTPRK |
HGNC: | 9674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.66e-61 | 14 |
lymphocyte of B lineage | 3.43e-54 | 24 |
pro-B cell | 3.43e-54 | 24 |
lymphoid lineage restricted progenitor cell | 2.61e-23 | 52 |
lymphocyte | 8.26e-23 | 53 |
common lymphoid progenitor | 8.26e-23 | 53 |
nongranular leukocyte | 1.71e-11 | 115 |
leukocyte | 3.44e-09 | 136 |
single nucleate cell | 1.44e-08 | 3 |
mononuclear cell | 1.44e-08 | 3 |
hematopoietic lineage restricted progenitor cell | 3.07e-08 | 120 |
hematopoietic stem cell | 8.50e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 2.18e-36 | 15 |
haemolymphatic fluid | 2.18e-36 | 15 |
organism substance | 2.18e-36 | 15 |
spleen | 4.99e-09 | 3 |
gastrointestinal system mesentery | 4.99e-09 | 3 |
stomach region | 4.99e-09 | 3 |
mesentery | 4.99e-09 | 3 |
gastrointestinal system serosa | 4.99e-09 | 3 |
mesentery of stomach | 4.99e-09 | 3 |
gut mesentery | 4.99e-09 | 3 |
dorsal mesentery | 4.99e-09 | 3 |
dorsal mesogastrium | 4.99e-09 | 3 |
peritoneal cavity | 4.99e-09 | 3 |
spleen primordium | 4.99e-09 | 3 |
hemolymphoid system | 1.29e-07 | 108 |
lymph node | 2.09e-07 | 1 |
tonsil | 3.41e-07 | 1 |
mucosa-associated lymphoid tissue | 3.41e-07 | 1 |
lymphoid tissue | 3.41e-07 | 1 |
tonsillar ring | 3.41e-07 | 1 |
adult organism | 3.64e-07 | 114 |
vermiform appendix | 4.08e-07 | 1 |
caecum | 4.08e-07 | 1 |
midgut | 4.08e-07 | 1 |
submandibular gland | 4.60e-07 | 1 |
submandibular gland primordium | 4.60e-07 | 1 |