FFCP PHASE1:Hg19::chr6:128842168..128842186,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:128842168..128842186,-
|short_description=p9@PTPRK
|description=CAGE_peak_9_at_PTPRK_5end
|association_with_transcript=-298bp_to_ENST00000368227,ENST000004...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5796 | |EntrezGene=5796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9674 | |HGNC=9674 | ||
|TSSclassifier=strong | |||
|UniProt=F5GXI4,F5GWP2,Q15262,Q59EZ1 | |UniProt=F5GXI4,F5GWP2,Q15262,Q59EZ1 | ||
|association_with_transcript=-298bp_to_ENST00000368227,ENST00000427676,NM_001135648,uc003qbj.2,uc003qbk.2,uc003qbm.3,uc010kfc.2,uc011ebu.1,uc011ebv.1_5end | |||
|cluster_id=chr6:128842168..128842186,- | |||
|description=CAGE_peak_9_at_PTPRK_5end | |||
|id=chr6:128842168..128842186,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000244;1.63e-17;4!CL:0000731;1.63e-17;4!CL:0002368;3.32e-14;13!CL:0002076;1.97e-12;42!CL:0002621;2.53e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,1.74e-17,4;CL:0000731,1.74e-17,4;CL:0002368,4.78e-14,13;CL:0002076,4.51e-13,42;CL:0002621,2.81e-11,3;CL:0000223,4.36e-09,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3347;1.05e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,9.02e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000481!1.65e-11!347;UBERON:0000475!2.19e-11!365;UBERON:0000119!1.87e-08!312;UBERON:0000483!2.13e-08!309;UBERON:0001950!2.38e-08!20;UBERON:0000033!3.71e-08!123;UBERON:0000161!5.50e-08!35;UBERON:0006554!6.08e-08!44;UBERON:0001008!1.30e-07!45;UBERON:0000477!2.03e-07!286;UBERON:0002619!3.03e-07!22;UBERON:0000153!3.49e-07!129;UBERON:0007811!3.49e-07!129;UBERON:0004111!5.45e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.02e-15;12!UBERON:0000365;3.98e-14;5!UBERON:0005910;7.32e-12;6!UBERON:0001949;2.53e-11;3!UBERON:0001828;3.86e-09;8!UBERON:0004913;1.05e-08;1!UBERON:0003703;1.05e-08;1!UBERON:0001174;1.05e-08;1!UBERON:0004914;1.05e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.18e-14,5;UBERON:0005910,7.63e-12,6;UBERON:0001949,2.81e-11,3;UBERON:0001828,4.57e-09,8;UBERON:0004913,7.75e-09,1;UBERON:0003703,7.75e-09,1;UBERON:0001174,7.75e-09,1;UBERON:0004914,7.75e-09,1 | |||
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| ||
|short_description=p9@PTPRK | |||
}} | }} |
Latest revision as of 15:58, 24 September 2015
Short description: | p9@PTPRK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PTPRK_5end |
Coexpression cluster: | NA |
Association with transcript: | -298bp_to_ENST00000368227, ENST00000427676, NM_001135648, uc003qbj.2, uc003qbk.2, uc003qbm.3, uc010kfc.2, uc011ebu.1, uc011ebv.1_5end |
EntrezGene: | PTPRK |
HGNC: | 9674 |
UniProt: | F5GXI4F5GWP2Q15262Q59EZ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.74e-17 | 4 |
urothelial cell | 1.74e-17 | 4 |
respiratory epithelial cell | 4.78e-14 | 13 |
endo-epithelial cell | 4.51e-13 | 42 |
gingival epithelial cell | 2.81e-11 | 3 |
endodermal cell | 4.36e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
urothelium | 4.18e-14 | 5 |
transitional epithelium | 7.63e-12 | 6 |
gingival epithelium | 2.81e-11 | 3 |
gingiva | 4.57e-09 | 8 |
hepatopancreatic ampulla | 7.75e-09 | 1 |
extrahepatic bile duct | 7.75e-09 | 1 |
common bile duct | 7.75e-09 | 1 |
duodenal papilla | 7.75e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 9.02e-09 | 1 |