FFCP PHASE1:Hg19::chr7:22396829..22396835,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:22396829..22396835,-
|short_description=p14@RAPGEF5
|description=CAGE_peak_14_at_RAPGEF5_5end
|association_with_transcript=-66bp_to_ENST00000405243_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9771 | |EntrezGene=9771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16862 | |HGNC=16862 | ||
|TSSclassifier=strong | |||
|UniProt=E9PGY3 | |UniProt=E9PGY3 | ||
|association_with_transcript=-66bp_to_ENST00000405243_5end | |||
|cluster_id=chr7:22396829..22396835,- | |||
|coexpression_cluster_id=C4674 | |||
|description=CAGE_peak_14_at_RAPGEF5_5end | |||
|id=chr7:22396829..22396835,- | |||
|ontology_enrichment_celltype=CL:0000945!7.30e-10!24;CL:0000826!7.30e-10!24 | |||
|ontology_enrichment_celltype_v019=CL:0000785;9.35e-13;1!CL:0000819;9.35e-13;1!CL:0000945;1.15e-11;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,9.92e-13,1;CL:0000945,1.13e-11,24;CL:0000826,1.13e-11,24;CL:0000785,5.41e-07,2;CL:0000955,5.41e-07,2;CL:0000818,5.41e-07,2;CL:0000954,5.41e-07,2;CL:0000816,5.41e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.32e-12;1!CL:0000954;5.26e-07;2!UBERON:0010122;8.28e-07;2 | |||
|ontology_enrichment_disease=DOID:305!7.84e-11!106;DOID:0050687!1.45e-08!143;DOID:14566!8.64e-08!239;DOID:162!1.25e-07!235;DOID:0050686!6.08e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:0060058;8.31e-28;10!DOID:0060073;9.35e-13;1!DOID:8675;9.35e-13;1!DOID:3151;2.32e-12;1!DOID:3149;2.32e-12;1!DOID:5409;5.70e-12;4!DOID:1325;3.24e-07;7!DOID:3904;3.24e-07;7!DOID:3451;8.28e-07;2!DOID:4159;8.28e-07;2!DOID:0060122;8.28e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,7.46e-28,10;DOID:0060073,9.92e-13,1;DOID:8675,9.92e-13,1;DOID:3151,4.81e-12,1;DOID:3149,4.81e-12,1;DOID:5409,5.70e-12,4;DOID:0050686,3.36e-08,137;DOID:1325,3.24e-07,7;DOID:3904,3.24e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002780!6.86e-18!41;UBERON:0001890!6.86e-18!41;UBERON:0006240!6.86e-18!41;UBERON:0001869!3.06e-17!32;UBERON:0003080!3.17e-17!42;UBERON:0001893!9.74e-16!34;UBERON:0002791!9.01e-15!33;UBERON:0001049!4.14e-14!57;UBERON:0005068!4.14e-14!57;UBERON:0006241!4.14e-14!57;UBERON:0007135!4.14e-14!57;UBERON:0002020!4.15e-14!34;UBERON:0003528!4.15e-14!34;UBERON:0000955!1.47e-13!69;UBERON:0006238!1.47e-13!69;UBERON:0002616!4.01e-12!59;UBERON:0000073!5.75e-12!94;UBERON:0001016!5.75e-12!94;UBERON:0001017!6.71e-12!82;UBERON:0002619!9.11e-12!22;UBERON:0000956!4.93e-11!25;UBERON:0000203!4.93e-11!25;UBERON:0007023!8.14e-11!115;UBERON:0005743!8.66e-11!86;UBERON:0003056!1.23e-10!61;UBERON:0001950!6.14e-10!20;UBERON:0000153!7.31e-09!129;UBERON:0007811!7.31e-09!129;UBERON:0002420!3.32e-08!9;UBERON:0007245!3.32e-08!9;UBERON:0010009!3.32e-08!9;UBERON:0010011!3.32e-08!9;UBERON:0000454!3.32e-08!9;UBERON:0000033!5.65e-08!123;UBERON:0003075!1.03e-07!86;UBERON:0007284!1.03e-07!86;UBERON:0002346!1.89e-07!90;UBERON:0000344!3.21e-07!12;UBERON:0000349!7.75e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;1.22e-15;3!UBERON:0005382;1.22e-15;3!UBERON:0001874;2.32e-12;1!UBERON:0001154;2.32e-12;1!UBERON:0001153;2.32e-12;1!UBERON:0009854;2.32e-12;1!UBERON:0000369;5.70e-12;4!UBERON:0002435;5.70e-12;4!UBERON:0000204;5.70e-12;4!UBERON:0009663;3.24e-07;7!UBERON:0002370;8.28e-07;2!UBERON:0001873;8.28e-07;2!UBERON:0005058;8.28e-07;2!UBERON:0009113;8.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,2.56e-15,3;UBERON:0005382,2.56e-15,3;UBERON:0001154,1.11e-12,1;UBERON:0001153,1.11e-12,1;UBERON:0001045,1.11e-12,1;UBERON:0001874,3.85e-12,1;UBERON:0000369,9.90e-12,4;UBERON:0002435,9.90e-12,4;UBERON:0000204,9.90e-12,4;UBERON:0010082,9.90e-12,4;UBERON:0009663,4.43e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.229240217243854,0,0.157421562627358,0,0,0,0,0,0,1.16200800870452,1.56386155736164,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,0,0,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0.265059536642971,0.232387885739037,0.207322110030741,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,1.32438929824395,0.245976877086227,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0.16798212819886,0.141775097242386,0.179117045405697,0,0.383382679165211,0,0,0.621984346622316,0.576479813667846,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0.144269212976445,0.995985806877798,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0.63337622438398,0.19924798825107,1.93398740871803,0.755798243562828,0,0.123084805461069,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0.262379999988587,0,0.227586896570999,0.254253650292766,0.236387681767936,0.689486746482929,0,0.347249989866585,0.885741385813839,1.08536794762867,0,0.221158519862449,0.295547618953547,0,0,0.41827123283581,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.282706142867882,0.432777279484182,0,0.353830258013357,0.611030144933625,0.296521128680622,0.247127877893006,0.104421949505455,0,0,0.468528891450678,2.18945747058799,0.391329237864179,0,0,0,0,0.063186579628488,0.150323419414493,0.311064574191741,0,0,0,0,0.284609546029793,0,0.520679215005393,0.293977192243133,0,0,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0.19871461170299,0.50648636764703,0,0.240476460754601,0,0,0.432271251462318,0,1.20116498503375,0,0,0,0.271808412147228,0.104602846312333,0,0,0.600420288709789,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0.315132729228895,0.741742725430498,1.14586024552114,0,0.169346664131569,0.795229689809303,0.681017030557878,0,0.412618309791701,0,0,0,0.91124334987037,1.0063040627978,0.0788057072991982,0.104909176269996,0,0,0.383830394638891,0,0,0,0,0,0,0,0.246277562248017,0,0,0,1.32506888912221,0,0,0.342173675768659,0.704815022316672,0.427149650270779,0.157204305099666,0,0,0,4.14094834495046,0,0,0,0,0,0.157054096250234,0,0.366078794705889,0.625954653532499,0,0,0,0.138348634936231,0.249960815924213,0,0.570930667089935,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0.211312123358627,0.19998739585493,0,0,0,0,0.139879507719444,0,0.895260599125562,0.323474434190045,0,0.109209638192014,0,0,0,0,0,0.23658523500376,0,0,0,0.770750701157514,0,0.798169295285756,0.82046545696302,0.756215088665154,0.484100767249525,0.484426936895553,0,0.687034029507179,0.471878893390961,0.550285795565037,0.231051332300676,0,0,0.198916222116275,0,0,0.781514011233092,0,0,0.147856086217045,0.945526184657525,0,0.206686796501184,0.634158101939068,0,0,0,0.175871244359621,0.766574565837572,0.535701835878287,0.672567444437648,0,0.227662191351298,0.0887023701626388,0,0,0.339848664884159,0.72350050919134,0.118193840883968,0,0.078493092850514,1.09980912941201,0,0,0,0,0,2.52821778772363,0,0,0,0,0,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0.671132590786754,0.098150233615243,0.243835849964539,0,0.102662806856247,0,0,0.233939463462106,0.994753875806841,0.118920090777569,0.11294608203896,1.20934568419972,1.20770274853339,0.385870790539723,0.218559560503957,1.88126918544609,0,0.471353094203252,0,0,0.8453114551668,0,0.563903507879121,0.193373663920732,0,0.535661815816973,0,0,0.730336388246517,0,0,0,0.611923411718232,0,0,0,0,0,0.378499274505237,0,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0.476128862927481,1.61472274590015,0.931120714437869,0,0,0,0,0,0.404112318087525,0.358611026963382,0,0.244209805832924,0.106727345877715,0,0.269475606319761,0,0,0.813792356631477,0,0.201273793591026,0.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641136984606466 | ||
|short_description=p14@RAPGEF5 | |||
}} | }} |
Latest revision as of 18:53, 17 September 2015
Short description: | p14@RAPGEF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_RAPGEF5_5end |
Coexpression cluster: | C4674_lymphoma_diffuse_small_smallcell_caudate_acute_signet |
Association with transcript: | -66bp_to_ENST00000405243_5end |
EntrezGene: | RAPGEF5 |
HGNC: | 16862 |
UniProt: | E9PGY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 9.92e-13 | 1 |
lymphocyte of B lineage | 1.13e-11 | 24 |
pro-B cell | 1.13e-11 | 24 |
mature B cell | 5.41e-07 | 2 |
pre-B-II cell | 5.41e-07 | 2 |
transitional stage B cell | 5.41e-07 | 2 |
small pre-B-II cell | 5.41e-07 | 2 |
immature B cell | 5.41e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 2.56e-15 | 3 |
dorsal striatum | 2.56e-15 | 3 |
vermiform appendix | 1.11e-12 | 1 |
caecum | 1.11e-12 | 1 |
midgut | 1.11e-12 | 1 |
putamen | 3.85e-12 | 1 |
corpus striatum | 9.90e-12 | 4 |
striatum | 9.90e-12 | 4 |
ventral part of telencephalon | 9.90e-12 | 4 |
future corpus striatum | 9.90e-12 | 4 |
telencephalic nucleus | 4.43e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 7.46e-28 | 10 |
lymphatic system cancer | 9.92e-13 | 1 |
lymphosarcoma | 9.92e-13 | 1 |
skin squamous cell carcinoma | 4.81e-12 | 1 |
keratoacanthoma | 4.81e-12 | 1 |
lung small cell carcinoma | 5.70e-12 | 4 |
organ system cancer | 3.36e-08 | 137 |
bronchus cancer | 3.24e-07 | 7 |
bronchogenic carcinoma | 3.24e-07 | 7 |