FFCP PHASE1:Hg19::chr7:27205106..27205134,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=3205 | |EntrezGene=3205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=5109 | |HGNC=5109 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=P31269 | |UniProt=P31269 | ||
|association_with_transcript=0bp_to_ENST00000343483_5end | |association_with_transcript=0bp_to_ENST00000343483_5end | ||
|cluster_id=chr7:27205106..27205134,- | |||
|coexpression_cluster_id=C4681 | |coexpression_cluster_id=C4681 | ||
|description=CAGE_peak_2_at_HOXA9_5end | |description=CAGE_peak_2_at_HOXA9_5end |
Latest revision as of 01:42, 18 September 2015
Short description: | p2@HOXA9 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXA9_5end |
Coexpression cluster: | C4681_smallcell_acute_small_clear_renal_endometrioid_embryonic |
Association with transcript: | 0bp_to_ENST00000343483_5end |
EntrezGene: | HOXA9 |
HGNC: | 5109 |
UniProt: | P31269 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p2@HOXA9 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 9.50e-13 | 17 |
kidney epithelial cell | 9.50e-13 | 17 |
epithelial cell of nephron | 5.55e-11 | 15 |
kidney tubule cell | 3.20e-10 | 10 |
nephron tubule epithelial cell | 3.20e-10 | 10 |
kidney cortical cell | 2.09e-08 | 12 |
renal cortical epithelial cell | 2.09e-08 | 12 |
skin fibroblast | 2.00e-07 | 23 |
vein endothelial cell | 3.97e-07 | 6 |
meso-epithelial cell | 6.77e-07 | 45 |
Showing 1 to 10 of 11 entries
Ontology term | p-value | n |
---|---|---|
renal system | 2.03e-20 | 48 |
urinary system structure | 3.87e-20 | 47 |
cavitated compound organ | 2.80e-15 | 31 |
kidney | 5.75e-15 | 26 |
kidney mesenchyme | 5.75e-15 | 26 |
upper urinary tract | 5.75e-15 | 26 |
kidney rudiment | 5.75e-15 | 26 |
kidney field | 5.75e-15 | 26 |
excretory tube | 2.00e-11 | 16 |
kidney epithelium | 2.00e-11 | 16 |
Showing 1 to 10 of 31 entries