FFCP PHASE1:Hg19::chr8:21988673..21988692,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr8:21988673..21988692,-
|short_description=p3@HR
|description=CAGE_peak_3_at_HR_5end
|association_with_transcript=-108bp_to_ENST00000312841,NM_005144,NM_01841...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55806 | |EntrezGene=55806 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5172 | |HGNC=5172 | ||
|TSSclassifier=strong | |||
|UniProt=O43593 | |UniProt=O43593 | ||
|association_with_transcript=-108bp_to_ENST00000312841,NM_005144,NM_018411,uc003xas.2,uc003xat.2,uc010lts.2_5end | |||
|cluster_id=chr8:21988673..21988692,- | |||
|description=CAGE_peak_3_at_HR_5end | |||
|id=chr8:21988673..21988692,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002623;2.05e-08;3!CL:0000622;3.68e-08;5!CL:0000154;8.74e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,2.55e-08,3;CL:0000622,5.38e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0006238;9.91e-10;10!UBERON:0006601;9.53e-07;82 | |||
|ontology_enrichment_disease=DOID:0050687!1.14e-11!143;DOID:305!4.58e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:171;1.24e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.66e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0000924!1.56e-22!173;UBERON:0006601!1.56e-22!173;UBERON:0004121!5.40e-21!169;UBERON:0000073!8.77e-21!94;UBERON:0001016!8.77e-21!94;UBERON:0005743!1.10e-20!86;UBERON:0000033!1.02e-19!123;UBERON:0001017!1.20e-19!82;UBERON:0000153!2.16e-19!129;UBERON:0007811!2.16e-19!129;UBERON:0000955!5.38e-19!69;UBERON:0006238!5.38e-19!69;UBERON:0007023!2.12e-16!115;UBERON:0001049!2.85e-16!57;UBERON:0005068!2.85e-16!57;UBERON:0006241!2.85e-16!57;UBERON:0007135!2.85e-16!57;UBERON:0002346!6.06e-15!90;UBERON:0000475!8.74e-15!365;UBERON:0003080!1.20e-14!42;UBERON:0002780!7.80e-14!41;UBERON:0001890!7.80e-14!41;UBERON:0006240!7.80e-14!41;UBERON:0002616!1.23e-13!59;UBERON:0003075!1.83e-13!86;UBERON:0007284!1.83e-13!86;UBERON:0001950!3.88e-13!20;UBERON:0002619!1.70e-12!22;UBERON:0001893!3.61e-12!34;UBERON:0003056!3.73e-12!61;UBERON:0002020!4.92e-12!34;UBERON:0003528!4.92e-12!34;UBERON:0002791!1.91e-11!33;UBERON:0001869!2.27e-11!32;UBERON:0000956!3.50e-10!25;UBERON:0000203!3.50e-10!25;UBERON:0000062!7.13e-10!511;UBERON:0000064!1.75e-08!219;UBERON:0000468!2.37e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;8.65e-19;20!UBERON:0002619;7.70e-17;22!UBERON:0000956;1.75e-14;25!UBERON:0000203;1.75e-14;25!UBERON:0002021;8.64e-12;5!UBERON:0001869;2.63e-11;32!UBERON:0001893;4.30e-10;34!UBERON:0002791;7.96e-10;32!UBERON:0003528;3.01e-08;34!UBERON:0002020;3.01e-08;34!UBERON:0002780;4.45e-08;41!UBERON:0001890;4.45e-08;41!UBERON:0000200;6.78e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,8.38e-19,20;UBERON:0001016,5.72e-18,89;UBERON:0002619,7.48e-17,22;UBERON:0001017,3.08e-16,81;UBERON:0011216,9.31e-15,223;UBERON:0000956,1.70e-14,25;UBERON:0000203,1.70e-14,25;UBERON:0000955,2.50e-14,68;UBERON:0006238,2.50e-14,68;UBERON:0004121,9.78e-14,171;UBERON:0000924,9.78e-14,171;UBERON:0006601,9.78e-14,171;UBERON:0001869,1.85e-12,32;UBERON:0002780,4.91e-12,41;UBERON:0001890,4.91e-12,41;UBERON:0003080,4.91e-12,41;UBERON:0006240,4.91e-12,41;UBERON:0002021,9.37e-12,5;UBERON:0001893,1.56e-11,34;UBERON:0002791,1.10e-10,32;UBERON:0003056,6.46e-10,61;UBERON:0003528,6.98e-10,34;UBERON:0002020,6.98e-10,34;UBERON:0000073,1.43e-09,53;UBERON:0002616,1.43e-09,53;UBERON:0002346,3.08e-09,86;UBERON:0001049,7.76e-09,56;UBERON:0005068,7.76e-09,56;UBERON:0006241,7.76e-09,56;UBERON:0007135,7.76e-09,56;UBERON:0007023,1.09e-08,114;UBERON:0003075,5.29e-07,82;UBERON:0007284,5.29e-07,82;UBERON:0000200,6.56e-07,6 | |||
|phase1_expression=0,0.856402095563933,0.281908808191942,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0.982343066232845,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0.286836620748814,0,0.560677600142307,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.516628905878827,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0.150238058906597,0,0,0.213557388818567,0.211931901159562,0.900273288253207,0.412210116953756,0.257640540045629,0.18611685633159,0.506328996723799,0.584622030967192,0,0.276149695926898,0.484938170456436,0,0,0.169560592310488,0.193260853163297,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,1.65629520055781,1.68584690078102,0,1.65440959098591,0.653638332277218,1.42362371466658,0.943819157121151,0.588664395376038,0.38474715694639,0,0,0,1.47008711385542,0,0,0,0,0,0,0.329250856225877,0,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,2.37061319387782,2.57545848628462,0,0,0,0,0.16798212819886,0.141775097242386,0.447792613514241,0.581267877027924,0.383382679165211,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532844358032199,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0.434343920002738,2.67119219315498,0.537182889719687,0,0,0,0,0,0,3.86644406388848,1.84267891867784,5.10351001322531,0,0,0,0.981531933753119,0.500170521059677,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460385919864187,0.561320188866147,0.128139149255701,0,0,1.48418066444991,0,0,0,0,0,0,0.200506470303285,0.644566922551274,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.984043937099117,0,0,0.915694648183434,1.32015199872941,0,1.30012049207304,0,0.48335359146061,0,0,0,0,0,0.0852266274161009,0.178064071293475,0.165284915360978,0.192190067365106,0,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,2.01090682660736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0.478278818186467,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,1.31857361344705,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,4.64475897881586,0.19924798825107,0.276283915531148,0,1.22722419002586,0,0.311039587661807,0.0898683511473268,0.537063524026827,0,0.0986434056369336,0,0,5.81599647657131,2.50473865036998,1.99613798001194,1.5625665665114,0.262379999988587,5.79999660347835,0.796554137998498,0,0.236387681767936,3.10269035917318,4.37406920074882,0,0,0.361789315876224,1.52581736317083,0.995213339381022,0.886642856860642,2.63262476584767,0.871507708151921,1.81250867562184,1.23120413606075,1.70913083770502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,4.97630965539252,1.41532103205343,0,0,0,0,0.269604531922708,0,0.234264445725339,0,0.19566461893209,0,0,1.20990716048664,0,0.063186579628488,0,0,0.664653872707185,0,0,0,0,0.138674673013139,0,1.07791637155815,0.0870592065804026,0,0,3.19295893253981,3.65446585430928,3.85942648150083,0.290967049465258,0,0.451961481561065,0,0,1.64608069485285,0.977756913674015,0.0801588202515337,1.06726497369676,0.799238438328521,0,0,0,0,0,2.12124631155116,2.03856309110421,1.569042694685,0.509991088181609,0,0.600420288709789,0.547621515567972,0,0,0,0.279282401272254,0,0,0,0,0,0,0.360299883542404,0,0.0787831823072236,0,0.202210631562555,5.21665652028169,0,0,0.272406812223151,0,0,0,0,0,1.45798935979259,0.335434687599266,0,0.0524545881349981,0,3.5857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.39669780522807,1.71086837884329,0.704815022316672,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0.5013797880454,0,0,0,0.886068179966986,2.92863035764712,2.253436752717,0,0.554645257684261,0.620964029413834,0.691743174681154,0.124980407962107,0,0.570930667089935,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0.643324774124777,0,1.81364740409818,0,0.244736704506468,0.179088841081487,0.617602894321944,1.53498834705095,0,0,0,0.256241518587947,1.38172136692479,0,0.691292180758654,0,0.132864840313363,0,0,11.5513267114248,0.211312123358627,0,0,0,0.567515953566836,0,0.699397538597222,1.86623178009892,1.91841556955478,4.744291701454,0,0.218419276384028,0,2.33832412111851,2.72658681369805,5.02780426175919,0,0.0788617450012534,0.80057074828547,0.352675943690684,0,0.449604575675217,1.41696576325585,1.27707087245721,3.69209455633359,1.76450187355203,4.35690690524573,1.61475645631851,0,0.490738592505128,0,0.183428598521679,1.15525666150338,0,0,0.397832444232549,0.150420656698515,0,0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| ||
|short_description=p3@HR | |||
}} | }} |
Latest revision as of 10:08, 17 September 2015
Short description: | p3@HR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HR_5end |
Coexpression cluster: | NA |
Association with transcript: | -108bp_to_ENST00000312841, NM_005144, NM_018411, uc003xas.2, uc003xat.2, uc010lts.2_5end |
EntrezGene: | HR |
HGNC: | 5172 |
UniProt: | O43593 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 2.55e-08 | 3 |
acinar cell | 5.38e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neocortex | 8.38e-19 | 20 |
nervous system | 5.72e-18 | 89 |
regional part of cerebral cortex | 7.48e-17 | 22 |
central nervous system | 3.08e-16 | 81 |
organ system subdivision | 9.31e-15 | 223 |
cerebral cortex | 1.70e-14 | 25 |
pallium | 1.70e-14 | 25 |
brain | 2.50e-14 | 68 |
future brain | 2.50e-14 | 68 |
ectoderm-derived structure | 9.78e-14 | 171 |
ectoderm | 9.78e-14 | 171 |
presumptive ectoderm | 9.78e-14 | 171 |
cerebral hemisphere | 1.85e-12 | 32 |
regional part of forebrain | 4.91e-12 | 41 |
forebrain | 4.91e-12 | 41 |
anterior neural tube | 4.91e-12 | 41 |
future forebrain | 4.91e-12 | 41 |
occipital lobe | 9.37e-12 | 5 |
telencephalon | 1.56e-11 | 34 |
regional part of telencephalon | 1.10e-10 | 32 |
pre-chordal neural plate | 6.46e-10 | 61 |
brain grey matter | 6.98e-10 | 34 |
gray matter | 6.98e-10 | 34 |
regional part of nervous system | 1.43e-09 | 53 |
regional part of brain | 1.43e-09 | 53 |
neurectoderm | 3.08e-09 | 86 |
neural tube | 7.76e-09 | 56 |
neural rod | 7.76e-09 | 56 |
future spinal cord | 7.76e-09 | 56 |
neural keel | 7.76e-09 | 56 |
adult organism | 1.09e-08 | 114 |
neural plate | 5.29e-07 | 82 |
presumptive neural plate | 5.29e-07 | 82 |
gyrus | 6.56e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.66e-09 | 10 |